Strain Fitness in Shewanella amazonensis SB2B around Sama_3175

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,762,552	+		Sama_3174	0.29	+1.4
3,762,553	-		Sama_3174	0.29	+1.9
3,762,553	-		Sama_3174	0.29	+0.7
3,762,553	-		Sama_3174	0.29	+1.4
3,762,654	-		Sama_3174	0.38	+2.7
3,762,718	+		Sama_3174	0.43	-1.0
3,762,719	-		Sama_3174	0.43	-0.8
3,762,719	-		Sama_3174	0.43	-3.0
3,762,719	-		Sama_3174	0.43	-0.9
3,762,722	+		Sama_3174	0.43	-0.7
3,762,722	+		Sama_3174	0.43	-0.5
3,762,722	+		Sama_3174	0.43	-0.6
3,762,722	+		Sama_3174	0.43	-3.0
3,762,722	+		Sama_3174	0.43	+1.1
3,762,722	+		Sama_3174	0.43	+0.6
3,762,722	+		Sama_3174	0.43	-0.7
3,762,722	+		Sama_3174	0.43	-0.7
3,762,722	+		Sama_3174	0.43	+0.6
3,762,722	+		Sama_3174	0.43	+0.0
3,762,723	-		Sama_3174	0.43	+1.4
3,762,723	-		Sama_3174	0.43	+0.3
3,762,723	-		Sama_3174	0.43	+1.1
3,762,723	-		Sama_3174	0.43	+0.3
3,762,723	-		Sama_3174	0.43	+1.3
3,762,723	-		Sama_3174	0.43	-3.2
3,762,723	-		Sama_3174	0.43	-1.0
3,762,723	-		Sama_3174	0.43	-0.3
3,762,774	-		Sama_3174	0.48	+0.3
3,762,774	-		Sama_3174	0.48	-1.8
3,762,774	-		Sama_3174	0.48	+0.8
3,762,781	-		Sama_3174	0.48	+1.3
3,762,781	-		Sama_3174	0.48	+1.7
3,762,781	-		Sama_3174	0.48	-1.3
3,762,786	+		Sama_3174	0.49	+3.0
3,762,852	+		Sama_3174	0.54	+1.0
3,762,852	+		Sama_3174	0.54	-2.7
3,762,853	-		Sama_3174	0.54	-1.3
3,762,853	-		Sama_3174	0.54	+1.2
3,762,853	-		Sama_3174	0.54	+1.3
3,762,947	-		Sama_3174	0.62	-2.0
3,762,947	-		Sama_3174	0.62	+2.0
3,762,955	+		Sama_3174	0.63	+0.6
3,762,958	+		Sama_3174	0.63	-0.3
3,762,958	+		Sama_3174	0.63	+0.6
3,762,958	+		Sama_3174	0.63	+0.3
3,762,958	+		Sama_3174	0.63	-0.2
3,762,958	+		Sama_3174	0.63	+1.3
3,762,958	+		Sama_3174	0.63	-1.5
3,762,958	+		Sama_3174	0.63	+1.0
3,762,958	+		Sama_3174	0.63	-1.3
3,762,958	+		Sama_3174	0.63	+0.6
3,762,958	+		Sama_3174	0.63	+1.3
3,762,959	-		Sama_3174	0.63	-1.3
3,762,959	-		Sama_3174	0.63	+2.5
3,762,963	-		Sama_3174	0.64	-1.3
3,763,005	+		Sama_3174	0.67	-0.3
3,763,006	-		Sama_3174	0.67	+1.0
3,763,006	-		Sama_3174	0.67	+2.0
3,763,006	-		Sama_3174	0.67	-1.5
3,763,006	-		Sama_3174	0.67	-2.4
3,763,022	-		Sama_3174	0.69	-2.0
3,763,047	+		Sama_3174	0.71	-0.2
3,763,047	+		Sama_3174	0.71	-2.0
3,763,048	-		Sama_3174	0.71	+1.4
3,763,048	-		Sama_3174	0.71	+0.4
3,763,048	-		Sama_3174	0.71	+1.4
3,763,048	-		Sama_3174	0.71	-3.4
3,763,076	+		Sama_3174	0.73	-0.9
3,763,126	+		Sama_3174	0.77	-3.2
3,763,126	+		Sama_3174	0.77	+1.3
3,763,126	+		Sama_3174	0.77	+0.9
3,763,126	+		Sama_3174	0.77	+2.4
3,763,126	+		Sama_3174	0.77	+0.2
3,763,127	-		Sama_3174	0.77	-0.0
3,763,127	-		Sama_3174	0.77	-0.8
3,763,127	-		Sama_3174	0.77	+0.5
3,763,127	-		Sama_3174	0.77	+0.1
3,763,127	-		Sama_3174	0.77	+0.9
3,763,127	-		Sama_3174	0.77	-0.5
3,763,130	+		Sama_3174	0.78	+2.9
3,763,131	-		Sama_3174	0.78	+2.3
3,763,131	-		Sama_3174	0.78	-0.7
3,763,131	-		Sama_3174	0.78	-1.9
3,763,160	+		Sama_3174	0.80	-0.8
3,763,160	+		Sama_3174	0.80	-0.5
3,763,160	+		Sama_3174	0.80	+1.0
3,763,160	+		Sama_3174	0.80	+0.7
3,763,161	-		Sama_3174	0.80	+0.7
3,763,161	-		Sama_3174	0.80	+1.3
3,763,161	-		Sama_3174	0.80	+0.9
3,763,161	-		Sama_3174	0.80	-1.7
3,763,199	+		Sama_3174	0.83	-2.8
3,763,199	+		Sama_3174	0.83	-0.3
3,763,199	+		Sama_3174	0.83	-0.2
3,763,199	+		Sama_3174	0.83	-2.2
3,763,199	+		Sama_3174	0.83	+2.4
3,763,200	-		Sama_3174	0.83	-0.6
3,763,223	+		Sama_3174	0.85	-0.2
3,763,223	+		Sama_3174	0.85	+0.7
3,763,223	+		Sama_3174	0.85	-0.5
3,763,226	-		Sama_3174	0.86	+0.5
3,763,359	+				-0.3
3,763,360	-				-0.2
3,763,360	-				-0.4
3,763,444	-				-2.0
3,763,451	+				-1.3
3,763,452	-				+0.0
3,763,479	+				+1.5
3,763,479	+				-0.7
3,763,479	+				+1.6
3,763,479	+				+1.4
3,763,480	-				+1.1
3,763,480	-				+1.7
3,763,480	-				+2.0
3,763,480	-				-2.9
3,763,480	-				+0.9
3,763,528	+				+1.2
3,763,533	+				-0.3
3,763,533	+				+1.1
3,763,533	+				-2.0
3,763,533	+				-1.7
3,763,533	+				+0.7
3,763,534	-				+1.8
3,763,546	+				+0.6
3,763,546	+				-2.0
3,763,547	-				-0.2
3,763,547	-				-0.1
3,763,547	-				+0.4
3,763,547	-				-0.3
3,763,547	-				+0.1
3,763,547	-				-0.0
3,763,561	+				-0.5
3,763,568	+				-0.3
3,763,568	+				+0.1
3,763,569	-				+0.1
3,763,686	+		Sama_3175	0.15	+0.4
3,763,765	+		Sama_3175	0.23	+0.4
3,763,776	-		Sama_3175	0.24	+1.5
3,763,784	+		Sama_3175	0.25	-3.3
3,763,785	-		Sama_3175	0.25	+1.9
3,763,785	-		Sama_3175	0.25	-1.7
3,763,785	-		Sama_3175	0.25	+0.4
3,763,889	+		Sama_3175	0.36	-2.4
3,763,890	-		Sama_3175	0.36	-0.2
3,763,890	-		Sama_3175	0.36	+0.7
3,763,895	+		Sama_3175	0.36	+1.2
3,764,002	+		Sama_3175	0.47	-1.5
3,764,033	+		Sama_3175	0.50	+1.1
3,764,033	+		Sama_3175	0.50	+1.0
3,764,033	+		Sama_3175	0.50	+0.4
3,764,034	-		Sama_3175	0.50	+0.8
3,764,034	-		Sama_3175	0.50	+0.6
3,764,035	+		Sama_3175	0.51	-0.6
3,764,036	-		Sama_3175	0.51	-2.8
3,764,036	-		Sama_3175	0.51	-1.5
3,764,170	+		Sama_3175	0.64	+1.2
3,764,171	-		Sama_3175	0.64	+2.0
3,764,171	-		Sama_3175	0.64	-1.0
3,764,171	-		Sama_3175	0.64	+0.6
3,764,191	+		Sama_3175	0.66	+0.3
3,764,191	+		Sama_3175	0.66	+0.4
3,764,191	+		Sama_3175	0.66	-0.3
3,764,191	+		Sama_3175	0.66	-0.3
3,764,191	+		Sama_3175	0.66	-2.2
3,764,192	-		Sama_3175	0.66	-2.5
3,764,192	-		Sama_3175	0.66	+2.2
3,764,205	+		Sama_3175	0.68	-2.0
3,764,205	+		Sama_3175	0.68	+1.3
3,764,206	-		Sama_3175	0.68	-0.7
3,764,206	-		Sama_3175	0.68	+0.3
3,764,232	+		Sama_3175	0.71	-0.5
3,764,232	+		Sama_3175	0.71	-2.9
3,764,233	-		Sama_3175	0.71	+0.9
3,764,233	-		Sama_3175	0.71	+0.3
3,764,233	-		Sama_3175	0.71	+0.5
3,764,233	-		Sama_3175	0.71	-1.9
3,764,233	-		Sama_3175	0.71	-1.3
3,764,233	-		Sama_3175	0.71	-1.7
3,764,239	+		Sama_3175	0.71	-2.2
3,764,240	-		Sama_3175	0.71	-0.3
3,764,240	-		Sama_3175	0.71	-0.6
3,764,240	-		Sama_3175	0.71	+1.2
3,764,240	-		Sama_3175	0.71	+1.7
3,764,240	-		Sama_3175	0.71	+0.7
3,764,240	-		Sama_3175	0.71	+0.5
3,764,240	-		Sama_3175	0.71	+0.6
3,764,240	-		Sama_3175	0.71	+0.8
3,764,243	+		Sama_3175	0.72	-1.5
3,764,372	+		Sama_3175	0.85	+0.2
3,764,447	+				-0.8
3,764,447	+				-1.5
3,764,455	+				-1.0
3,764,456	-				-1.9
3,764,456	-				+0.9
3,764,456	-				+1.1
3,764,480	+				+1.6
3,764,480	+				-3.4
3,764,480	+				-0.7
3,764,480	+				-0.3
3,764,480	+				+0.6
3,764,481	-				-0.3
3,764,491	+				+0.8
3,764,491	+				-1.5
3,764,491	+				+1.4
3,764,492	-				-0.3
3,764,501	+				-2.3
3,764,501	+				+0.6
3,764,501	+				+0.3
3,764,502	-				+0.5
3,764,502	-				-3.1
3,764,513	+				+0.1
3,764,514	-				-1.7
3,764,514	-				-3.0
3,764,514	-				+2.6
3,764,514	-				+1.4
3,764,514	-				-0.7
3,764,514	-				+0.0
3,764,514	-				-0.7
3,764,522	+				-2.9
3,764,522	+				-2.2
3,764,523	-				+1.2
3,764,523	-				-0.2
3,764,523	-				+1.1
3,764,531	-				+1.7
3,764,551	+				-0.8
3,764,556	+				-0.8
3,764,557	-				+1.5
3,764,595	+		Sama_3176	0.12	+0.7
3,764,596	-		Sama_3176	0.13	+0.9
3,764,596	-		Sama_3176	0.13	-0.0
3,764,678	+		Sama_3176	0.27	-0.3
3,764,678	+		Sama_3176	0.27	+0.7
3,764,678	+		Sama_3176	0.27	+2.4
3,764,678	+		Sama_3176	0.27	-0.3
3,764,678	+		Sama_3176	0.27	-0.7
3,764,678	+		Sama_3176	0.27	+0.5
3,764,678	+		Sama_3176	0.27	-0.3
3,764,678	+		Sama_3176	0.27	+0.2
3,764,679	-		Sama_3176	0.27	-0.3
3,764,679	-		Sama_3176	0.27	-0.9
3,764,679	-		Sama_3176	0.27	+0.6
3,764,679	-		Sama_3176	0.27	+0.5
3,764,679	-		Sama_3176	0.27	+1.6
3,764,679	-		Sama_3176	0.27	-1.9
3,764,679	-		Sama_3176	0.27	+1.1
3,764,679	-		Sama_3176	0.27	-0.6
3,764,679	-		Sama_3176	0.27	+0.0
3,764,679	-		Sama_3176	0.27	-2.8
3,764,767	+		Sama_3176	0.43	+0.2
3,764,767	+		Sama_3176	0.43	+2.3
3,764,768	-		Sama_3176	0.43	-1.0
3,764,768	-		Sama_3176	0.43	-0.9
3,764,768	-		Sama_3176	0.43	+1.0
3,764,768	-		Sama_3176	0.43	+0.5
3,764,768	-		Sama_3176	0.43	+0.8
3,764,781	+		Sama_3176	0.45	-0.2
3,764,802	+		Sama_3176	0.49	-0.8
3,764,802	+		Sama_3176	0.49	-1.2
3,764,802	+		Sama_3176	0.49	-1.4
3,764,802	+		Sama_3176	0.49	-2.2
3,764,803	-		Sama_3176	0.49	-0.6
3,764,803	-		Sama_3176	0.49	-1.4
3,764,803	-		Sama_3176	0.49	-1.0
3,764,803	-		Sama_3176	0.49	-2.0
3,764,803	-		Sama_3176	0.49	-2.2
3,764,803	-		Sama_3176	0.49	+1.0
3,764,803	-		Sama_3176	0.49	-0.9
3,764,803	-		Sama_3176	0.49	-1.6
3,764,859	+		Sama_3176	0.59	-1.7
3,764,860	-		Sama_3176	0.59	-0.8
3,764,860	-		Sama_3176	0.59	-1.0
3,764,928	+		Sama_3176	0.71	-0.3
3,764,990	+		Sama_3176	0.82	+0.5
3,765,002	+		Sama_3176	0.84	+0.4
3,765,003	-		Sama_3176	0.84	-1.0
3,765,003	-		Sama_3176	0.84	-0.8
3,765,010	+		Sama_3176	0.86	-1.0
3,765,011	-		Sama_3176	0.86	-2.6
3,765,031	+		Sama_3176	0.89	-0.7
3,765,031	+		Sama_3176	0.89	+0.2
3,765,032	-		Sama_3176	0.89	-0.3
3,765,074	+				-0.5
3,765,074	+				+0.4
3,765,074	+				+1.0
3,765,074	+				+1.4
3,765,074	+				-1.3
3,765,074	+				+2.0
3,765,074	+				+0.3
3,765,074	+				+1.3
3,765,074	+				-0.5
3,765,074	+				+1.0
3,765,075	-				-0.2
3,765,075	-				+0.7
3,765,075	-				+0.7
3,765,075	-				-1.7
3,765,075	-				+1.3
3,765,075	-				+0.3
3,765,075	-				-3.2
3,765,075	-				+3.3
3,765,078	+				+1.1
3,765,078	+				-1.0
3,765,078	+				+1.3
3,765,079	-				+1.4
3,765,091	+				+0.3
3,765,091	+				-0.4
3,765,092	-				+1.5
3,765,106	+				+0.1
3,765,168	-				-1.1
3,765,247	+				-0.1
3,765,247	+				+0.0
3,765,247	+				+1.2
3,765,247	+				-0.7
3,765,247	+				+1.1
3,765,247	+				-1.2
3,765,248	-				+0.7
3,765,248	-				-0.3
3,765,248	-				-1.3
3,765,248	-				-1.0
3,765,248	-				+1.5
3,765,248	-				-2.7
3,765,248	-				-2.7
3,765,248	-				+2.8
3,765,248	-				+1.4
3,765,248	-				+1.2
3,765,248	-				+1.0
3,765,261	-				-1.7
3,765,278	+				+0.2
3,765,278	+				-0.4
3,765,279	-				-0.1
3,765,321	-				+0.4
3,765,321	-				-0.3
3,765,329	+				-2.0
3,765,329	+				+0.2
3,765,329	+				+1.9
3,765,329	+				-0.3
3,765,329	+				+0.9
3,765,329	+				+0.6
3,765,330	-				+1.6
3,765,330	-				+0.4
3,765,330	-				+3.7
3,765,413	+		Sama_3177	0.13	-0.7
3,765,413	+		Sama_3177	0.13	+0.1
3,765,413	+		Sama_3177	0.13	+0.4
3,765,419	+		Sama_3177	0.14	-1.0
3,765,419	+		Sama_3177	0.14	-1.7
3,765,419	+		Sama_3177	0.14	+0.2
3,765,419	+		Sama_3177	0.14	-0.0
3,765,455	+		Sama_3177	0.15	-0.5
3,765,456	-		Sama_3177	0.15	+0.7
3,765,456	-		Sama_3177	0.15	+1.3
3,765,469	+		Sama_3177	0.16	-1.4
3,765,469	+		Sama_3177	0.16	+1.1
3,765,470	-		Sama_3177	0.16	-2.0
3,765,470	-		Sama_3177	0.16	+0.7
3,765,489	+		Sama_3177	0.17	-0.0
3,765,489	+		Sama_3177	0.17	+1.1
3,765,489	+		Sama_3177	0.17	+2.3
3,765,490	-		Sama_3177	0.17	+0.6
3,765,505	+		Sama_3177	0.18	+0.4
3,765,506	-		Sama_3177	0.18	-1.9