Strain Fitness in Shewanella amazonensis SB2B around Sama_3134

Experiment: a-Ketoglutaric

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_3132 and Sama_3133 are separated by 84 nucleotidesSama_3133 and Sama_3134 are separated by 1 nucleotidesSama_3134 and Sama_3135 are separated by 96 nucleotides Sama_3132: Sama_3132 - metal-dependent amidohydrolase with the TIM-barrel fold (RefSeq), at 3,720,007 to 3,721,704 _3132 Sama_3133: Sama_3133 - hypothetical protein (RefSeq), at 3,721,789 to 3,722,700 _3133 Sama_3134: Sama_3134 - hypothetical protein (RefSeq), at 3,722,702 to 3,723,202 _3134 Sama_3135: Sama_3135 - enoyl-CoA hydratase (RefSeq), at 3,723,299 to 3,724,105 _3135 Position (kb) 3722 3723 3724Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3721.702 kb on + strandat 3721.702 kb on + strandat 3721.702 kb on + strandat 3721.702 kb on + strandat 3721.703 kb on - strandat 3721.703 kb on - strandat 3721.724 kb on + strandat 3721.725 kb on - strandat 3721.725 kb on - strandat 3721.725 kb on - strandat 3721.765 kb on + strandat 3721.766 kb on - strandat 3721.795 kb on + strandat 3721.795 kb on + strandat 3721.796 kb on - strandat 3721.796 kb on - strandat 3721.812 kb on + strandat 3721.812 kb on + strandat 3721.813 kb on - strandat 3721.813 kb on - strandat 3721.921 kb on + strand, within Sama_3133at 3721.922 kb on - strand, within Sama_3133at 3722.004 kb on + strand, within Sama_3133at 3722.031 kb on - strand, within Sama_3133at 3722.093 kb on + strand, within Sama_3133at 3722.094 kb on - strand, within Sama_3133at 3722.116 kb on - strand, within Sama_3133at 3722.122 kb on - strand, within Sama_3133at 3722.313 kb on - strand, within Sama_3133at 3722.313 kb on - strand, within Sama_3133at 3722.323 kb on + strand, within Sama_3133at 3722.337 kb on + strand, within Sama_3133at 3722.337 kb on + strand, within Sama_3133at 3722.338 kb on - strand, within Sama_3133at 3722.590 kb on + strand, within Sama_3133at 3722.590 kb on + strand, within Sama_3133at 3722.591 kb on - strand, within Sama_3133at 3722.616 kb on + strandat 3722.617 kb on - strandat 3722.728 kb on + strandat 3722.729 kb on - strandat 3722.765 kb on - strand, within Sama_3134at 3722.765 kb on - strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.766 kb on + strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.767 kb on - strand, within Sama_3134at 3722.794 kb on + strand, within Sama_3134at 3722.824 kb on + strand, within Sama_3134at 3722.873 kb on + strand, within Sama_3134at 3722.873 kb on + strand, within Sama_3134at 3722.873 kb on + strand, within Sama_3134at 3722.873 kb on + strand, within Sama_3134at 3722.874 kb on - strand, within Sama_3134at 3722.874 kb on - strand, within Sama_3134at 3722.885 kb on - strand, within Sama_3134at 3722.938 kb on + strand, within Sama_3134at 3722.939 kb on - strand, within Sama_3134at 3722.950 kb on - strand, within Sama_3134at 3722.950 kb on - strand, within Sama_3134at 3722.976 kb on - strand, within Sama_3134at 3723.032 kb on - strand, within Sama_3134at 3723.060 kb on + strand, within Sama_3134at 3723.061 kb on - strand, within Sama_3134at 3723.109 kb on + strand, within Sama_3134at 3723.110 kb on - strand, within Sama_3134at 3723.110 kb on - strand, within Sama_3134at 3723.133 kb on + strand, within Sama_3134at 3723.133 kb on + strand, within Sama_3134at 3723.133 kb on + strand, within Sama_3134at 3723.134 kb on - strand, within Sama_3134at 3723.134 kb on - strand, within Sama_3134at 3723.222 kb on - strandat 3723.227 kb on + strandat 3723.227 kb on + strandat 3723.228 kb on - strandat 3723.264 kb on + strandat 3723.265 kb on - strandat 3723.300 kb on + strandat 3723.301 kb on - strandat 3723.324 kb on + strandat 3723.324 kb on + strandat 3723.324 kb on + strandat 3723.325 kb on - strandat 3723.340 kb on + strandat 3723.399 kb on + strand, within Sama_3135at 3723.399 kb on + strand, within Sama_3135at 3723.399 kb on + strand, within Sama_3135at 3723.399 kb on + strand, within Sama_3135at 3723.400 kb on - strand, within Sama_3135at 3723.430 kb on + strand, within Sama_3135at 3723.430 kb on + strand, within Sama_3135at 3723.431 kb on - strand, within Sama_3135at 3723.431 kb on - strand, within Sama_3135at 3723.445 kb on + strand, within Sama_3135at 3723.445 kb on + strand, within Sama_3135at 3723.445 kb on + strand, within Sama_3135at 3723.497 kb on + strand, within Sama_3135at 3723.497 kb on + strand, within Sama_3135at 3723.498 kb on - strand, within Sama_3135at 3723.498 kb on - strand, within Sama_3135at 3723.498 kb on - strand, within Sama_3135at 3723.529 kb on + strand, within Sama_3135at 3723.529 kb on + strand, within Sama_3135at 3723.530 kb on - strand, within Sama_3135at 3723.632 kb on + strand, within Sama_3135at 3723.633 kb on - strand, within Sama_3135at 3723.691 kb on + strand, within Sama_3135at 3723.692 kb on - strand, within Sama_3135at 3723.768 kb on + strand, within Sama_3135at 3723.768 kb on + strand, within Sama_3135at 3723.769 kb on - strand, within Sama_3135at 3723.787 kb on + strand, within Sama_3135at 3723.788 kb on - strand, within Sama_3135at 3723.788 kb on - strand, within Sama_3135at 3723.907 kb on + strand, within Sama_3135at 3723.907 kb on + strand, within Sama_3135at 3723.908 kb on - strand, within Sama_3135at 3723.947 kb on + strand, within Sama_3135at 3723.947 kb on + strand, within Sama_3135at 3723.948 kb on - strand, within Sama_3135at 3723.948 kb on - strand, within Sama_3135at 3724.049 kb on + strandat 3724.049 kb on + strandat 3724.049 kb on + strandat 3724.050 kb on - strandat 3724.064 kb on + strandat 3724.077 kb on - strandat 3724.077 kb on - strandat 3724.115 kb on + strandat 3724.116 kb on - strandat 3724.116 kb on - strandat 3724.116 kb on - strandat 3724.146 kb on - strandat 3724.146 kb on - strandat 3724.146 kb on - strandat 3724.146 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
remove
3,721,702 + -0.6
3,721,702 + -0.1
3,721,702 + +1.2
3,721,702 + -1.2
3,721,703 - -2.1
3,721,703 - -1.3
3,721,724 + -0.7
3,721,725 - -1.4
3,721,725 - +0.6
3,721,725 - +1.1
3,721,765 + +2.7
3,721,766 - -0.9
3,721,795 + +0.2
3,721,795 + +1.8
3,721,796 - +2.8
3,721,796 - +0.3
3,721,812 + +0.5
3,721,812 + +1.1
3,721,813 - +1.2
3,721,813 - +1.0
3,721,921 + Sama_3133 0.14 +0.7
3,721,922 - Sama_3133 0.15 +0.6
3,722,004 + Sama_3133 0.24 -0.1
3,722,031 - Sama_3133 0.27 -1.0
3,722,093 + Sama_3133 0.33 +0.8
3,722,094 - Sama_3133 0.33 -1.6
3,722,116 - Sama_3133 0.36 +1.7
3,722,122 - Sama_3133 0.37 +0.5
3,722,313 - Sama_3133 0.57 -1.9
3,722,313 - Sama_3133 0.57 -0.2
3,722,323 + Sama_3133 0.59 +2.0
3,722,337 + Sama_3133 0.60 -1.6
3,722,337 + Sama_3133 0.60 +1.8
3,722,338 - Sama_3133 0.60 -2.2
3,722,590 + Sama_3133 0.88 -0.8
3,722,590 + Sama_3133 0.88 -2.1
3,722,591 - Sama_3133 0.88 -2.5
3,722,616 + +1.0
3,722,617 - +1.8
3,722,728 + -2.6
3,722,729 - +0.3
3,722,765 - Sama_3134 0.13 -2.2
3,722,765 - Sama_3134 0.13 +0.6
3,722,766 + Sama_3134 0.13 -0.1
3,722,766 + Sama_3134 0.13 +2.3
3,722,766 + Sama_3134 0.13 -1.9
3,722,766 + Sama_3134 0.13 +0.3
3,722,766 + Sama_3134 0.13 +0.4
3,722,766 + Sama_3134 0.13 +0.2
3,722,766 + Sama_3134 0.13 +0.4
3,722,766 + Sama_3134 0.13 +0.2
3,722,766 + Sama_3134 0.13 +1.0
3,722,766 + Sama_3134 0.13 -0.9
3,722,767 - Sama_3134 0.13 -0.2
3,722,767 - Sama_3134 0.13 -1.6
3,722,767 - Sama_3134 0.13 -1.6
3,722,767 - Sama_3134 0.13 -0.2
3,722,767 - Sama_3134 0.13 +0.3
3,722,767 - Sama_3134 0.13 -0.0
3,722,767 - Sama_3134 0.13 +0.1
3,722,767 - Sama_3134 0.13 -3.4
3,722,767 - Sama_3134 0.13 -0.3
3,722,767 - Sama_3134 0.13 +0.2
3,722,767 - Sama_3134 0.13 +0.2
3,722,767 - Sama_3134 0.13 +0.6
3,722,767 - Sama_3134 0.13 -2.7
3,722,767 - Sama_3134 0.13 +2.1
3,722,767 - Sama_3134 0.13 -0.7
3,722,767 - Sama_3134 0.13 -2.1
3,722,767 - Sama_3134 0.13 -1.9
3,722,767 - Sama_3134 0.13 -0.5
3,722,767 - Sama_3134 0.13 +1.0
3,722,767 - Sama_3134 0.13 -1.0
3,722,767 - Sama_3134 0.13 -2.3
3,722,767 - Sama_3134 0.13 -0.6
3,722,767 - Sama_3134 0.13 +1.3
3,722,794 + Sama_3134 0.18 +2.6
3,722,824 + Sama_3134 0.24 -1.1
3,722,873 + Sama_3134 0.34 -0.0
3,722,873 + Sama_3134 0.34 +1.7
3,722,873 + Sama_3134 0.34 -0.5
3,722,873 + Sama_3134 0.34 +0.8
3,722,874 - Sama_3134 0.34 +0.3
3,722,874 - Sama_3134 0.34 -0.3
3,722,885 - Sama_3134 0.37 +1.3
3,722,938 + Sama_3134 0.47 -0.7
3,722,939 - Sama_3134 0.47 +0.5
3,722,950 - Sama_3134 0.50 +1.6
3,722,950 - Sama_3134 0.50 +0.6
3,722,976 - Sama_3134 0.55 -1.7
3,723,032 - Sama_3134 0.66 +0.3
3,723,060 + Sama_3134 0.71 +1.4
3,723,061 - Sama_3134 0.72 -0.7
3,723,109 + Sama_3134 0.81 -0.2
3,723,110 - Sama_3134 0.81 +0.7
3,723,110 - Sama_3134 0.81 +2.3
3,723,133 + Sama_3134 0.86 +1.1
3,723,133 + Sama_3134 0.86 -1.1
3,723,133 + Sama_3134 0.86 -0.5
3,723,134 - Sama_3134 0.86 -2.2
3,723,134 - Sama_3134 0.86 -1.1
3,723,222 - -0.3
3,723,227 + -1.8
3,723,227 + -0.2
3,723,228 - -0.1
3,723,264 + +1.4
3,723,265 - -0.8
3,723,300 + -2.2
3,723,301 - +0.6
3,723,324 + +1.5
3,723,324 + -1.6
3,723,324 + +0.7
3,723,325 - +2.3
3,723,340 + -0.3
3,723,399 + Sama_3135 0.12 +1.8
3,723,399 + Sama_3135 0.12 +0.1
3,723,399 + Sama_3135 0.12 -1.7
3,723,399 + Sama_3135 0.12 +0.3
3,723,400 - Sama_3135 0.13 +0.0
3,723,430 + Sama_3135 0.16 -0.0
3,723,430 + Sama_3135 0.16 -0.6
3,723,431 - Sama_3135 0.16 +1.9
3,723,431 - Sama_3135 0.16 -0.1
3,723,445 + Sama_3135 0.18 +0.1
3,723,445 + Sama_3135 0.18 +0.2
3,723,445 + Sama_3135 0.18 -0.1
3,723,497 + Sama_3135 0.25 -0.3
3,723,497 + Sama_3135 0.25 -0.7
3,723,498 - Sama_3135 0.25 -2.9
3,723,498 - Sama_3135 0.25 +0.8
3,723,498 - Sama_3135 0.25 +0.3
3,723,529 + Sama_3135 0.29 +0.9
3,723,529 + Sama_3135 0.29 -0.3
3,723,530 - Sama_3135 0.29 -0.3
3,723,632 + Sama_3135 0.41 +1.3
3,723,633 - Sama_3135 0.41 +0.5
3,723,691 + Sama_3135 0.49 -2.2
3,723,692 - Sama_3135 0.49 -0.2
3,723,768 + Sama_3135 0.58 -0.4
3,723,768 + Sama_3135 0.58 +0.7
3,723,769 - Sama_3135 0.58 +0.5
3,723,787 + Sama_3135 0.60 -3.1
3,723,788 - Sama_3135 0.61 +0.5
3,723,788 - Sama_3135 0.61 -0.5
3,723,907 + Sama_3135 0.75 +0.9
3,723,907 + Sama_3135 0.75 -0.3
3,723,908 - Sama_3135 0.75 -2.6
3,723,947 + Sama_3135 0.80 -0.4
3,723,947 + Sama_3135 0.80 +1.2
3,723,948 - Sama_3135 0.80 +0.9
3,723,948 - Sama_3135 0.80 -3.0
3,724,049 + +0.0
3,724,049 + +0.2
3,724,049 + +1.9
3,724,050 - +0.2
3,724,064 + +0.3
3,724,077 - -0.5
3,724,077 - -0.7
3,724,115 + -2.2
3,724,116 - -0.3
3,724,116 - -0.5
3,724,116 - -0.3
3,724,146 - +1.8
3,724,146 - +0.4
3,724,146 - -0.6
3,724,146 - -0.3

Or see this region's nucleotide sequence