Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3132 and Sama_3133 are separated by 84 nucleotides Sama_3133 and Sama_3134 are separated by 1 nucleotides Sama_3134 and Sama_3135 are separated by 96 nucleotides
Sama_3132: Sama_3132 - metal-dependent amidohydrolase with the TIM-barrel fold (RefSeq), at 3,720,007 to 3,721,704
_3132
Sama_3133: Sama_3133 - hypothetical protein (RefSeq), at 3,721,789 to 3,722,700
_3133
Sama_3134: Sama_3134 - hypothetical protein (RefSeq), at 3,722,702 to 3,723,202
_3134
Sama_3135: Sama_3135 - enoyl-CoA hydratase (RefSeq), at 3,723,299 to 3,724,105
_3135
Position (kb)
3722
3723
3724 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3721.702 kb on + strand at 3721.702 kb on + strand at 3721.702 kb on + strand at 3721.702 kb on + strand at 3721.703 kb on - strand at 3721.703 kb on - strand at 3721.724 kb on + strand at 3721.725 kb on - strand at 3721.725 kb on - strand at 3721.725 kb on - strand at 3721.765 kb on + strand at 3721.766 kb on - strand at 3721.795 kb on + strand at 3721.795 kb on + strand at 3721.796 kb on - strand at 3721.796 kb on - strand at 3721.812 kb on + strand at 3721.812 kb on + strand at 3721.813 kb on - strand at 3721.813 kb on - strand at 3721.921 kb on + strand, within Sama_3133 at 3721.922 kb on - strand, within Sama_3133 at 3722.004 kb on + strand, within Sama_3133 at 3722.031 kb on - strand, within Sama_3133 at 3722.093 kb on + strand, within Sama_3133 at 3722.094 kb on - strand, within Sama_3133 at 3722.116 kb on - strand, within Sama_3133 at 3722.122 kb on - strand, within Sama_3133 at 3722.313 kb on - strand, within Sama_3133 at 3722.313 kb on - strand, within Sama_3133 at 3722.323 kb on + strand, within Sama_3133 at 3722.337 kb on + strand, within Sama_3133 at 3722.337 kb on + strand, within Sama_3133 at 3722.338 kb on - strand, within Sama_3133 at 3722.590 kb on + strand, within Sama_3133 at 3722.590 kb on + strand, within Sama_3133 at 3722.591 kb on - strand, within Sama_3133 at 3722.616 kb on + strand at 3722.617 kb on - strand at 3722.728 kb on + strand at 3722.729 kb on - strand at 3722.765 kb on - strand, within Sama_3134 at 3722.765 kb on - strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.766 kb on + strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.767 kb on - strand, within Sama_3134 at 3722.794 kb on + strand, within Sama_3134 at 3722.824 kb on + strand, within Sama_3134 at 3722.873 kb on + strand, within Sama_3134 at 3722.873 kb on + strand, within Sama_3134 at 3722.873 kb on + strand, within Sama_3134 at 3722.873 kb on + strand, within Sama_3134 at 3722.874 kb on - strand, within Sama_3134 at 3722.874 kb on - strand, within Sama_3134 at 3722.885 kb on - strand, within Sama_3134 at 3722.938 kb on + strand, within Sama_3134 at 3722.939 kb on - strand, within Sama_3134 at 3722.950 kb on - strand, within Sama_3134 at 3722.950 kb on - strand, within Sama_3134 at 3722.976 kb on - strand, within Sama_3134 at 3723.032 kb on - strand, within Sama_3134 at 3723.060 kb on + strand, within Sama_3134 at 3723.061 kb on - strand, within Sama_3134 at 3723.109 kb on + strand, within Sama_3134 at 3723.110 kb on - strand, within Sama_3134 at 3723.110 kb on - strand, within Sama_3134 at 3723.133 kb on + strand, within Sama_3134 at 3723.133 kb on + strand, within Sama_3134 at 3723.133 kb on + strand, within Sama_3134 at 3723.134 kb on - strand, within Sama_3134 at 3723.134 kb on - strand, within Sama_3134 at 3723.222 kb on - strand at 3723.227 kb on + strand at 3723.227 kb on + strand at 3723.228 kb on - strand at 3723.264 kb on + strand at 3723.265 kb on - strand at 3723.300 kb on + strand at 3723.301 kb on - strand at 3723.324 kb on + strand at 3723.324 kb on + strand at 3723.324 kb on + strand at 3723.325 kb on - strand at 3723.340 kb on + strand at 3723.399 kb on + strand, within Sama_3135 at 3723.399 kb on + strand, within Sama_3135 at 3723.399 kb on + strand, within Sama_3135 at 3723.399 kb on + strand, within Sama_3135 at 3723.400 kb on - strand, within Sama_3135 at 3723.430 kb on + strand, within Sama_3135 at 3723.430 kb on + strand, within Sama_3135 at 3723.431 kb on - strand, within Sama_3135 at 3723.431 kb on - strand, within Sama_3135 at 3723.445 kb on + strand, within Sama_3135 at 3723.445 kb on + strand, within Sama_3135 at 3723.445 kb on + strand, within Sama_3135 at 3723.497 kb on + strand, within Sama_3135 at 3723.497 kb on + strand, within Sama_3135 at 3723.498 kb on - strand, within Sama_3135 at 3723.498 kb on - strand, within Sama_3135 at 3723.498 kb on - strand, within Sama_3135 at 3723.529 kb on + strand, within Sama_3135 at 3723.529 kb on + strand, within Sama_3135 at 3723.530 kb on - strand, within Sama_3135 at 3723.632 kb on + strand, within Sama_3135 at 3723.633 kb on - strand, within Sama_3135 at 3723.691 kb on + strand, within Sama_3135 at 3723.692 kb on - strand, within Sama_3135 at 3723.768 kb on + strand, within Sama_3135 at 3723.768 kb on + strand, within Sama_3135 at 3723.769 kb on - strand, within Sama_3135 at 3723.787 kb on + strand, within Sama_3135 at 3723.788 kb on - strand, within Sama_3135 at 3723.788 kb on - strand, within Sama_3135 at 3723.907 kb on + strand, within Sama_3135 at 3723.907 kb on + strand, within Sama_3135 at 3723.908 kb on - strand, within Sama_3135 at 3723.947 kb on + strand, within Sama_3135 at 3723.947 kb on + strand, within Sama_3135 at 3723.948 kb on - strand, within Sama_3135 at 3723.948 kb on - strand, within Sama_3135 at 3724.049 kb on + strand at 3724.049 kb on + strand at 3724.049 kb on + strand at 3724.050 kb on - strand at 3724.064 kb on + strand at 3724.077 kb on - strand at 3724.077 kb on - strand at 3724.115 kb on + strand at 3724.116 kb on - strand at 3724.116 kb on - strand at 3724.116 kb on - strand at 3724.146 kb on - strand at 3724.146 kb on - strand at 3724.146 kb on - strand at 3724.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 3,721,702 + -0.6 3,721,702 + -0.1 3,721,702 + +1.2 3,721,702 + -1.2 3,721,703 - -2.1 3,721,703 - -1.3 3,721,724 + -0.7 3,721,725 - -1.4 3,721,725 - +0.6 3,721,725 - +1.1 3,721,765 + +2.7 3,721,766 - -0.9 3,721,795 + +0.2 3,721,795 + +1.8 3,721,796 - +2.8 3,721,796 - +0.3 3,721,812 + +0.5 3,721,812 + +1.1 3,721,813 - +1.2 3,721,813 - +1.0 3,721,921 + Sama_3133 0.14 +0.7 3,721,922 - Sama_3133 0.15 +0.6 3,722,004 + Sama_3133 0.24 -0.1 3,722,031 - Sama_3133 0.27 -1.0 3,722,093 + Sama_3133 0.33 +0.8 3,722,094 - Sama_3133 0.33 -1.6 3,722,116 - Sama_3133 0.36 +1.7 3,722,122 - Sama_3133 0.37 +0.5 3,722,313 - Sama_3133 0.57 -1.9 3,722,313 - Sama_3133 0.57 -0.2 3,722,323 + Sama_3133 0.59 +2.0 3,722,337 + Sama_3133 0.60 -1.6 3,722,337 + Sama_3133 0.60 +1.8 3,722,338 - Sama_3133 0.60 -2.2 3,722,590 + Sama_3133 0.88 -0.8 3,722,590 + Sama_3133 0.88 -2.1 3,722,591 - Sama_3133 0.88 -2.5 3,722,616 + +1.0 3,722,617 - +1.8 3,722,728 + -2.6 3,722,729 - +0.3 3,722,765 - Sama_3134 0.13 -2.2 3,722,765 - Sama_3134 0.13 +0.6 3,722,766 + Sama_3134 0.13 -0.1 3,722,766 + Sama_3134 0.13 +2.3 3,722,766 + Sama_3134 0.13 -1.9 3,722,766 + Sama_3134 0.13 +0.3 3,722,766 + Sama_3134 0.13 +0.4 3,722,766 + Sama_3134 0.13 +0.2 3,722,766 + Sama_3134 0.13 +0.4 3,722,766 + Sama_3134 0.13 +0.2 3,722,766 + Sama_3134 0.13 +1.0 3,722,766 + Sama_3134 0.13 -0.9 3,722,767 - Sama_3134 0.13 -0.2 3,722,767 - Sama_3134 0.13 -1.6 3,722,767 - Sama_3134 0.13 -1.6 3,722,767 - Sama_3134 0.13 -0.2 3,722,767 - Sama_3134 0.13 +0.3 3,722,767 - Sama_3134 0.13 -0.0 3,722,767 - Sama_3134 0.13 +0.1 3,722,767 - Sama_3134 0.13 -3.4 3,722,767 - Sama_3134 0.13 -0.3 3,722,767 - Sama_3134 0.13 +0.2 3,722,767 - Sama_3134 0.13 +0.2 3,722,767 - Sama_3134 0.13 +0.6 3,722,767 - Sama_3134 0.13 -2.7 3,722,767 - Sama_3134 0.13 +2.1 3,722,767 - Sama_3134 0.13 -0.7 3,722,767 - Sama_3134 0.13 -2.1 3,722,767 - Sama_3134 0.13 -1.9 3,722,767 - Sama_3134 0.13 -0.5 3,722,767 - Sama_3134 0.13 +1.0 3,722,767 - Sama_3134 0.13 -1.0 3,722,767 - Sama_3134 0.13 -2.3 3,722,767 - Sama_3134 0.13 -0.6 3,722,767 - Sama_3134 0.13 +1.3 3,722,794 + Sama_3134 0.18 +2.6 3,722,824 + Sama_3134 0.24 -1.1 3,722,873 + Sama_3134 0.34 -0.0 3,722,873 + Sama_3134 0.34 +1.7 3,722,873 + Sama_3134 0.34 -0.5 3,722,873 + Sama_3134 0.34 +0.8 3,722,874 - Sama_3134 0.34 +0.3 3,722,874 - Sama_3134 0.34 -0.3 3,722,885 - Sama_3134 0.37 +1.3 3,722,938 + Sama_3134 0.47 -0.7 3,722,939 - Sama_3134 0.47 +0.5 3,722,950 - Sama_3134 0.50 +1.6 3,722,950 - Sama_3134 0.50 +0.6 3,722,976 - Sama_3134 0.55 -1.7 3,723,032 - Sama_3134 0.66 +0.3 3,723,060 + Sama_3134 0.71 +1.4 3,723,061 - Sama_3134 0.72 -0.7 3,723,109 + Sama_3134 0.81 -0.2 3,723,110 - Sama_3134 0.81 +0.7 3,723,110 - Sama_3134 0.81 +2.3 3,723,133 + Sama_3134 0.86 +1.1 3,723,133 + Sama_3134 0.86 -1.1 3,723,133 + Sama_3134 0.86 -0.5 3,723,134 - Sama_3134 0.86 -2.2 3,723,134 - Sama_3134 0.86 -1.1 3,723,222 - -0.3 3,723,227 + -1.8 3,723,227 + -0.2 3,723,228 - -0.1 3,723,264 + +1.4 3,723,265 - -0.8 3,723,300 + -2.2 3,723,301 - +0.6 3,723,324 + +1.5 3,723,324 + -1.6 3,723,324 + +0.7 3,723,325 - +2.3 3,723,340 + -0.3 3,723,399 + Sama_3135 0.12 +1.8 3,723,399 + Sama_3135 0.12 +0.1 3,723,399 + Sama_3135 0.12 -1.7 3,723,399 + Sama_3135 0.12 +0.3 3,723,400 - Sama_3135 0.13 +0.0 3,723,430 + Sama_3135 0.16 -0.0 3,723,430 + Sama_3135 0.16 -0.6 3,723,431 - Sama_3135 0.16 +1.9 3,723,431 - Sama_3135 0.16 -0.1 3,723,445 + Sama_3135 0.18 +0.1 3,723,445 + Sama_3135 0.18 +0.2 3,723,445 + Sama_3135 0.18 -0.1 3,723,497 + Sama_3135 0.25 -0.3 3,723,497 + Sama_3135 0.25 -0.7 3,723,498 - Sama_3135 0.25 -2.9 3,723,498 - Sama_3135 0.25 +0.8 3,723,498 - Sama_3135 0.25 +0.3 3,723,529 + Sama_3135 0.29 +0.9 3,723,529 + Sama_3135 0.29 -0.3 3,723,530 - Sama_3135 0.29 -0.3 3,723,632 + Sama_3135 0.41 +1.3 3,723,633 - Sama_3135 0.41 +0.5 3,723,691 + Sama_3135 0.49 -2.2 3,723,692 - Sama_3135 0.49 -0.2 3,723,768 + Sama_3135 0.58 -0.4 3,723,768 + Sama_3135 0.58 +0.7 3,723,769 - Sama_3135 0.58 +0.5 3,723,787 + Sama_3135 0.60 -3.1 3,723,788 - Sama_3135 0.61 +0.5 3,723,788 - Sama_3135 0.61 -0.5 3,723,907 + Sama_3135 0.75 +0.9 3,723,907 + Sama_3135 0.75 -0.3 3,723,908 - Sama_3135 0.75 -2.6 3,723,947 + Sama_3135 0.80 -0.4 3,723,947 + Sama_3135 0.80 +1.2 3,723,948 - Sama_3135 0.80 +0.9 3,723,948 - Sama_3135 0.80 -3.0 3,724,049 + +0.0 3,724,049 + +0.2 3,724,049 + +1.9 3,724,050 - +0.2 3,724,064 + +0.3 3,724,077 - -0.5 3,724,077 - -0.7 3,724,115 + -2.2 3,724,116 - -0.3 3,724,116 - -0.5 3,724,116 - -0.3 3,724,146 - +1.8 3,724,146 - +0.4 3,724,146 - -0.6 3,724,146 - -0.3
Or see this region's nucleotide sequence