Strain Fitness in Shewanella amazonensis SB2B around Sama_3079

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,655,819	-				-2.3
3,655,819	-				+0.5
3,655,854	-				-1.8
3,655,854	-				+0.4
3,655,861	-		Sama_3077	0.12	-1.9
3,655,861	-		Sama_3077	0.12	-0.5
3,655,861	-		Sama_3077	0.12	-1.3
3,655,877	-		Sama_3077	0.18	-2.1
3,655,907	-		Sama_3077	0.28	+0.8
3,655,910	-		Sama_3077	0.29	-3.2
3,655,910	-		Sama_3077	0.29	-1.6
3,655,910	-		Sama_3077	0.29	-3.5
3,655,910	-		Sama_3077	0.29	-0.3
3,655,925	-		Sama_3077	0.34	-1.9
3,655,941	-		Sama_3077	0.40	+0.2
3,655,977	+		Sama_3077	0.52	-4.0
3,655,978	-		Sama_3077	0.52	-1.3
3,656,022	-		Sama_3077	0.67	+0.8
3,656,022	-		Sama_3077	0.67	-1.8
3,656,031	-		Sama_3077	0.70	-0.3
3,656,176	+				-1.6
3,656,176	+				+2.8
3,656,177	-		Sama_3078	0.10	-1.9
3,656,177	-		Sama_3078	0.10	-2.9
3,656,189	-		Sama_3078	0.12	-1.3
3,656,397	-		Sama_3078	0.44	-1.1
3,656,397	-		Sama_3078	0.44	-2.8
3,656,397	-		Sama_3078	0.44	-1.1
3,656,397	-		Sama_3078	0.44	-2.3
3,656,397	-		Sama_3078	0.44	-2.7
3,656,417	+		Sama_3078	0.48	-1.1
3,656,418	-		Sama_3078	0.48	-3.5
3,656,438	+		Sama_3078	0.51	+0.2
3,656,438	+		Sama_3078	0.51	-3.2
3,656,438	+		Sama_3078	0.51	-0.8
3,656,438	+		Sama_3078	0.51	-2.1
3,656,439	-		Sama_3078	0.51	-2.6
3,656,439	-		Sama_3078	0.51	+0.7
3,656,439	-		Sama_3078	0.51	-1.1
3,656,439	-		Sama_3078	0.51	-1.3
3,656,439	-		Sama_3078	0.51	-1.8
3,656,442	+		Sama_3078	0.51	-2.2
3,656,442	+		Sama_3078	0.51	-1.9
3,656,442	+		Sama_3078	0.51	-0.3
3,656,443	-		Sama_3078	0.52	-2.7
3,656,443	-		Sama_3078	0.52	-2.9
3,656,443	-		Sama_3078	0.52	-0.8
3,656,443	-		Sama_3078	0.52	-0.3
3,656,443	-		Sama_3078	0.52	-1.3
3,656,443	-		Sama_3078	0.52	-0.7
3,656,453	+		Sama_3078	0.53	-0.8
3,656,453	+		Sama_3078	0.53	-0.8
3,656,454	-		Sama_3078	0.53	+0.5
3,656,454	-		Sama_3078	0.53	-2.3
3,656,511	-		Sama_3078	0.62	-0.8
3,656,511	-		Sama_3078	0.62	-3.2
3,656,522	-		Sama_3078	0.64	+1.2
3,656,528	+		Sama_3078	0.65	-2.1
3,656,528	+		Sama_3078	0.65	+0.0
3,656,528	+		Sama_3078	0.65	-1.3
3,656,528	+		Sama_3078	0.65	-1.9
3,656,528	+		Sama_3078	0.65	-1.6
3,656,529	-		Sama_3078	0.65	-1.3
3,656,529	-		Sama_3078	0.65	-1.9
3,656,529	-		Sama_3078	0.65	-2.8
3,656,529	-		Sama_3078	0.65	-2.2
3,656,529	-		Sama_3078	0.65	-1.1
3,656,537	+		Sama_3078	0.66	-0.3
3,656,538	-		Sama_3078	0.67	-0.8
3,656,538	-		Sama_3078	0.67	-2.5
3,656,538	-		Sama_3078	0.67	-2.2
3,656,538	-		Sama_3078	0.67	-0.8
3,656,543	+		Sama_3078	0.67	-1.6
3,656,552	+		Sama_3078	0.69	+0.2
3,656,553	-		Sama_3078	0.69	-1.1
3,656,576	-		Sama_3078	0.72	+1.4
3,656,643	+		Sama_3078	0.83	-2.1
3,656,644	-		Sama_3078	0.83	-3.1
3,656,644	-		Sama_3078	0.83	-2.1
3,656,670	-		Sama_3078	0.87	-1.6
3,656,710	-				-1.3
3,656,728	+				-1.3
3,656,737	+				-1.1
3,656,738	-				-2.2
3,656,738	-				-1.1
3,656,746	-				-1.1
3,656,746	-				-1.6
3,656,746	-				-1.9
3,656,746	-				-1.3
3,656,767	+				-1.2
3,656,767	+				-0.4
3,656,768	-				-0.3
3,656,768	-				-0.3
3,656,789	-				-0.5
3,656,789	-				-0.6
3,656,789	-				-0.7
3,656,818	-		Sama_3079	0.11	-2.3
3,656,818	-		Sama_3079	0.11	-2.2
3,656,871	-		Sama_3079	0.22	+1.2
3,656,896	-		Sama_3079	0.28	-1.1
3,656,896	-		Sama_3079	0.28	-0.8
3,656,937	-		Sama_3079	0.36	-2.0
3,657,110	-		Sama_3079	0.73	-0.7
3,657,118	+		Sama_3079	0.75	+0.9
3,657,118	+		Sama_3079	0.75	-0.8
3,657,119	-		Sama_3079	0.75	-1.8
3,657,119	-		Sama_3079	0.75	-1.6
3,657,119	-		Sama_3079	0.75	-3.1
3,657,119	-		Sama_3079	0.75	-1.3
3,657,119	-		Sama_3079	0.75	-0.8
3,657,149	+		Sama_3079	0.81	-2.1
3,657,159	-		Sama_3079	0.83	+2.7
3,657,159	-		Sama_3079	0.83	-0.3
3,657,240	-				-3.0
3,657,240	-				-1.1
3,657,240	-				-1.1
3,657,279	-				-0.1
3,657,345	+				+1.9
3,657,345	+				+0.2
3,657,345	+				+0.7
3,657,351	+				-0.6
3,657,351	+				-2.2
3,657,352	-				+0.5
3,657,352	-				-0.3
3,657,360	+		Sama_3080	0.11	+0.1
3,657,361	-		Sama_3080	0.11	-1.3
3,657,361	-		Sama_3080	0.11	-0.8
3,657,361	-		Sama_3080	0.11	-2.7
3,657,361	-		Sama_3080	0.11	-3.0
3,657,361	-		Sama_3080	0.11	+1.2
3,657,361	-		Sama_3080	0.11	-1.3
3,657,361	-		Sama_3080	0.11	-1.3
3,657,361	-		Sama_3080	0.11	-2.2
3,657,365	-		Sama_3080	0.11	-0.8
3,657,401	+		Sama_3080	0.16	-1.1
3,657,444	+		Sama_3080	0.21	-1.3
3,657,445	-		Sama_3080	0.21	-1.8
3,657,445	-		Sama_3080	0.21	-0.5
3,657,457	+		Sama_3080	0.23	-1.8
3,657,457	+		Sama_3080	0.23	-3.0
3,657,458	-		Sama_3080	0.23	-1.1
3,657,458	-		Sama_3080	0.23	+0.2
3,657,458	-		Sama_3080	0.23	-1.3
3,657,461	-		Sama_3080	0.23	-1.9
3,657,461	-		Sama_3080	0.23	+0.2
3,657,461	-		Sama_3080	0.23	-1.6
3,657,461	-		Sama_3080	0.23	-1.1
3,657,461	-		Sama_3080	0.23	-1.1
3,657,533	-		Sama_3080	0.33	-1.6
3,657,544	-		Sama_3080	0.34	-2.3
3,657,594	+		Sama_3080	0.40	-2.1
3,657,595	-		Sama_3080	0.41	-3.2
3,657,600	+		Sama_3080	0.41	-2.5
3,657,600	+		Sama_3080	0.41	-1.9
3,657,600	+		Sama_3080	0.41	-3.4
3,657,628	-		Sama_3080	0.45	-2.1
3,657,831	+		Sama_3080	0.71	-2.8
3,657,831	+		Sama_3080	0.71	-2.3
3,657,832	-		Sama_3080	0.71	-1.3
3,657,832	-		Sama_3080	0.71	-1.8
3,657,850	+		Sama_3080	0.73	-2.1
3,657,851	-		Sama_3080	0.73	-0.8
3,657,862	-		Sama_3080	0.75	-0.8
3,657,882	+		Sama_3080	0.77	+0.2
3,657,882	+		Sama_3080	0.77	-0.8
3,657,883	-		Sama_3080	0.77	-0.8
3,657,911	+		Sama_3080	0.81	-1.1
3,657,912	-		Sama_3080	0.81	-1.1
3,657,912	-		Sama_3080	0.81	-1.8
3,657,912	-		Sama_3080	0.81	-2.2
3,657,912	-		Sama_3080	0.81	-0.3
3,657,912	-		Sama_3080	0.81	+0.1
3,657,922	+		Sama_3080	0.82	-0.8
3,657,923	-		Sama_3080	0.83	-2.6
3,658,016	-				-2.1
3,658,016	-				-1.3
3,658,065	-				-1.6
3,658,075	+				-1.6
3,658,075	+				-1.9
3,658,075	+				-1.9
3,658,076	-				-1.6
3,658,076	-				-1.6
3,658,076	-				+0.1
3,658,076	-				+0.3
3,658,076	-				-0.6
3,658,076	-				-1.3
3,658,076	-				-0.2
3,658,076	-				+0.4
3,658,076	-				-1.9
3,658,077	+				-2.2
3,658,077	+				+0.2
3,658,078	-				-1.6
3,658,078	-				-2.6
3,658,078	-				-0.6
3,658,078	-				+1.6
3,658,093	-				-1.6
3,658,162	+		Sama_3081	0.14	+0.2
3,658,162	+		Sama_3081	0.14	-2.1
3,658,162	+		Sama_3081	0.14	-2.8
3,658,163	-		Sama_3081	0.14	-2.7
3,658,163	-		Sama_3081	0.14	+1.2
3,658,163	-		Sama_3081	0.14	-2.3
3,658,163	-		Sama_3081	0.14	-0.3
3,658,163	-		Sama_3081	0.14	-1.9
3,658,163	-		Sama_3081	0.14	-1.3
3,658,163	-		Sama_3081	0.14	-2.5
3,658,163	-		Sama_3081	0.14	-2.8
3,658,163	-		Sama_3081	0.14	+1.2
3,658,163	-		Sama_3081	0.14	-3.3
3,658,163	-		Sama_3081	0.14	-1.6
3,658,163	-		Sama_3081	0.14	+0.8
3,658,212	+		Sama_3081	0.20	-0.8
3,658,213	-		Sama_3081	0.21	-1.6
3,658,213	-		Sama_3081	0.21	+0.9
3,658,213	-		Sama_3081	0.21	-1.3
3,658,218	+		Sama_3081	0.21	-1.1
3,658,218	+		Sama_3081	0.21	+0.2
3,658,218	+		Sama_3081	0.21	+0.8
3,658,218	+		Sama_3081	0.21	-1.1
3,658,218	+		Sama_3081	0.21	-1.8
3,658,219	-		Sama_3081	0.21	-1.6
3,658,219	-		Sama_3081	0.21	-0.3
3,658,219	-		Sama_3081	0.21	-1.3
3,658,219	-		Sama_3081	0.21	-1.1
3,658,219	-		Sama_3081	0.21	-1.1
3,658,219	-		Sama_3081	0.21	-3.3
3,658,219	-		Sama_3081	0.21	-1.3
3,658,219	-		Sama_3081	0.21	-1.8
3,658,228	+		Sama_3081	0.22	-3.3
3,658,229	-		Sama_3081	0.23	-0.1