Strain Fitness in Shewanella amazonensis SB2B around Sama_2996

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,567,734	-		Sama_2994	0.47	+1.4
3,567,760	+		Sama_2994	0.50	+0.4
3,567,760	+		Sama_2994	0.50	+1.6
3,567,760	+		Sama_2994	0.50	+0.0
3,567,760	+		Sama_2994	0.50	-0.7
3,567,761	-		Sama_2994	0.50	+0.5
3,567,782	+		Sama_2994	0.53	+1.5
3,567,783	-		Sama_2994	0.53	+1.1
3,567,794	-		Sama_2994	0.54	+0.8
3,567,827	+		Sama_2994	0.58	-0.4
3,567,827	+		Sama_2994	0.58	-2.2
3,567,828	-		Sama_2994	0.58	+0.6
3,567,990	-		Sama_2994	0.77	-1.1
3,567,991	+		Sama_2994	0.77	+0.7
3,567,991	+		Sama_2994	0.77	-1.8
3,567,991	+		Sama_2994	0.77	-0.5
3,567,991	+		Sama_2994	0.77	+0.2
3,567,991	+		Sama_2994	0.77	-1.6
3,567,992	-		Sama_2994	0.77	+0.3
3,567,992	-		Sama_2994	0.77	+1.6
3,567,992	-		Sama_2994	0.77	+1.2
3,567,992	-		Sama_2994	0.77	+1.9
3,567,992	-		Sama_2994	0.77	+1.6
3,567,992	-		Sama_2994	0.77	+0.1
3,567,992	-		Sama_2994	0.77	-0.4
3,567,995	+		Sama_2994	0.78	+0.1
3,567,995	+		Sama_2994	0.78	-3.1
3,567,995	+		Sama_2994	0.78	-0.6
3,567,995	+		Sama_2994	0.78	-0.2
3,567,996	-		Sama_2994	0.78	-0.8
3,567,996	-		Sama_2994	0.78	+0.0
3,567,996	-		Sama_2994	0.78	+1.4
3,567,996	-		Sama_2994	0.78	-0.0
3,567,996	-		Sama_2994	0.78	-2.4
3,567,996	-		Sama_2994	0.78	+0.6
3,567,996	-		Sama_2994	0.78	+0.2
3,568,052	+		Sama_2994	0.84	+0.4
3,568,099	-				-0.6
3,568,165	-				-0.1
3,568,165	-				-0.5
3,568,215	+				+0.5
3,568,216	-				+0.5
3,568,261	+				+1.6
3,568,278	+				-0.4
3,568,357	-		Sama_2995	0.39	-1.8
3,568,409	+		Sama_2995	0.65	+1.2
3,568,409	+		Sama_2995	0.65	+1.9
3,568,409	+		Sama_2995	0.65	-0.0
3,568,409	+		Sama_2995	0.65	-0.4
3,568,409	+		Sama_2995	0.65	-2.0
3,568,409	+		Sama_2995	0.65	-1.8
3,568,409	+		Sama_2995	0.65	-0.8
3,568,409	+		Sama_2995	0.65	+1.2
3,568,409	+		Sama_2995	0.65	+1.0
3,568,410	-		Sama_2995	0.66	-1.2
3,568,410	-		Sama_2995	0.66	+0.4
3,568,410	-		Sama_2995	0.66	-0.4
3,568,410	-		Sama_2995	0.66	-2.5
3,568,410	-		Sama_2995	0.66	-1.1
3,568,410	-		Sama_2995	0.66	-2.5
3,568,410	-		Sama_2995	0.66	+0.8
3,568,410	-		Sama_2995	0.66	-1.9
3,568,410	-		Sama_2995	0.66	+1.2
3,568,471	+				+1.7
3,568,471	+				+1.4
3,568,477	+				-0.4
3,568,478	-				+1.0
3,568,478	-				-1.7
3,568,478	-				-0.4
3,568,478	-				+1.8
3,568,507	+				+0.8
3,568,507	+				+0.0
3,568,507	+				-2.4
3,568,508	-				-1.6
3,568,508	-				+0.6
3,568,522	+				+0.2
3,568,523	-				-0.9
3,568,523	-				+1.0
3,568,536	+				+0.0
3,568,536	+				-0.3
3,568,536	+				-3.2
3,568,536	+				-2.8
3,568,537	-				-0.6
3,568,537	-				+1.0
3,568,579	+				-0.9
3,568,580	-				+0.0
3,568,580	-				+0.9
3,568,580	-				-2.1
3,568,580	-				+0.3
3,568,591	+				-2.8
3,568,591	+				+3.3
3,568,591	+				-1.3
3,568,591	+				-0.1
3,568,592	-				+0.6
3,568,592	-				-0.9
3,568,592	-				+0.8
3,568,592	-				+1.3
3,568,592	-				-2.1
3,568,592	-				-0.3
3,568,592	-				+0.7
3,568,592	-				+1.1
3,568,592	-				-1.0
3,568,592	-				-1.0
3,568,592	-				-2.3
3,568,593	+				+0.3
3,568,593	+				-2.5
3,568,593	+				+3.7
3,568,593	+				+0.6
3,568,593	+				-1.9
3,568,593	+				-0.2
3,568,593	+				-3.3
3,568,593	+				+0.6
3,568,593	+				+0.9
3,568,593	+				+0.4
3,568,593	+				-1.4
3,568,593	+				-0.4
3,568,593	+				-1.3
3,568,594	-				-0.7
3,568,594	-				-0.7
3,568,594	-				-0.8
3,568,594	-				+0.5
3,568,594	-				-0.6
3,568,594	-				+0.4
3,568,594	-				-0.9
3,568,594	-				-0.9
3,568,594	-				+0.9
3,568,599	+				-0.8
3,568,599	+				+1.8
3,568,599	+				-1.8
3,568,599	+				-1.2
3,568,599	+				+0.2
3,568,599	+				-0.4
3,568,599	+				+1.2
3,568,599	+				+0.4
3,568,599	+				+0.5
3,568,599	+				-0.6
3,568,600	-				-0.8
3,568,600	-				-1.6
3,568,600	-				-0.6
3,568,600	-				-1.4
3,568,600	-				-1.1
3,568,600	-				-0.6
3,568,656	+				-1.1
3,568,656	+				+0.1
3,568,657	-				-2.0
3,568,657	-				-2.1
3,568,657	-				+1.2
3,568,681	+				-1.6
3,568,681	+				+0.2
3,568,682	-				-3.6
3,568,685	+				-0.4
3,568,686	-				+0.5
3,568,859	+		Sama_2996	0.13	-0.8
3,568,859	+		Sama_2996	0.13	-0.6
3,568,859	+		Sama_2996	0.13	-0.8
3,568,859	+		Sama_2996	0.13	-0.7
3,568,859	+		Sama_2996	0.13	-0.2
3,568,859	+		Sama_2996	0.13	-4.5
3,568,859	+		Sama_2996	0.13	-2.1
3,568,859	+		Sama_2996	0.13	-0.4
3,568,859	+		Sama_2996	0.13	-1.4
3,568,860	-		Sama_2996	0.13	+2.0
3,568,860	-		Sama_2996	0.13	-1.9
3,568,905	+		Sama_2996	0.15	-0.8
3,568,905	+		Sama_2996	0.15	-3.0
3,568,906	-		Sama_2996	0.15	-1.4
3,568,958	-		Sama_2996	0.18	-3.0
3,568,979	+		Sama_2996	0.19	-3.2
3,568,979	+		Sama_2996	0.19	+1.3
3,568,986	+		Sama_2996	0.20	-3.2
3,568,986	+		Sama_2996	0.20	+0.5
3,568,986	+		Sama_2996	0.20	-1.8
3,568,986	+		Sama_2996	0.20	-0.8
3,568,986	+		Sama_2996	0.20	+0.2
3,568,986	+		Sama_2996	0.20	+0.7
3,568,986	+		Sama_2996	0.20	+0.4
3,568,986	+		Sama_2996	0.20	-1.2
3,568,986	+		Sama_2996	0.20	-1.4
3,568,986	+		Sama_2996	0.20	-0.2
3,568,986	+		Sama_2996	0.20	-2.9
3,568,986	+		Sama_2996	0.20	+0.9
3,568,986	+		Sama_2996	0.20	-1.4
3,568,986	+		Sama_2996	0.20	+0.8
3,568,987	-		Sama_2996	0.20	+0.6
3,568,987	-		Sama_2996	0.20	+1.5
3,568,987	-		Sama_2996	0.20	-0.7
3,568,987	-		Sama_2996	0.20	-2.1
3,568,987	-		Sama_2996	0.20	-0.4
3,568,987	-		Sama_2996	0.20	-2.4
3,568,987	-		Sama_2996	0.20	-1.6
3,568,987	-		Sama_2996	0.20	-2.1
3,568,987	-		Sama_2996	0.20	-1.1
3,569,077	+		Sama_2996	0.24	-2.2
3,569,078	-		Sama_2996	0.24	+0.8
3,569,195	+		Sama_2996	0.31	-1.2
3,569,209	-		Sama_2996	0.31	-2.4
3,569,209	-		Sama_2996	0.31	+0.6
3,569,236	+		Sama_2996	0.33	-1.4
3,569,236	+		Sama_2996	0.33	-2.5
3,569,237	-		Sama_2996	0.33	-1.7
3,569,237	-		Sama_2996	0.33	-0.2
3,569,291	+		Sama_2996	0.36	-1.4
3,569,291	+		Sama_2996	0.36	-2.6
3,569,291	+		Sama_2996	0.36	-0.8
3,569,291	+		Sama_2996	0.36	+0.6
3,569,291	+		Sama_2996	0.36	-2.0
3,569,291	+		Sama_2996	0.36	+1.1
3,569,291	+		Sama_2996	0.36	-1.2
3,569,292	-		Sama_2996	0.36	-0.4
3,569,292	-		Sama_2996	0.36	-0.7
3,569,303	+		Sama_2996	0.36	+1.6
3,569,303	+		Sama_2996	0.36	+0.7
3,569,303	+		Sama_2996	0.36	-0.8
3,569,303	+		Sama_2996	0.36	-0.3
3,569,303	+		Sama_2996	0.36	+0.4
3,569,304	-		Sama_2996	0.36	-2.0
3,569,304	-		Sama_2996	0.36	-0.8
3,569,304	-		Sama_2996	0.36	-0.5
3,569,304	-		Sama_2996	0.36	-1.1
3,569,304	-		Sama_2996	0.36	+0.7
3,569,304	-		Sama_2996	0.36	-1.0
3,569,335	+		Sama_2996	0.38	-3.4
3,569,336	-		Sama_2996	0.38	-0.4
3,569,507	+		Sama_2996	0.47	-2.4
3,569,507	+		Sama_2996	0.47	+0.2
3,569,507	+		Sama_2996	0.47	-1.3
3,569,507	+		Sama_2996	0.47	-2.6
3,569,507	+		Sama_2996	0.47	-3.2
3,569,507	+		Sama_2996	0.47	-1.2
3,569,507	+		Sama_2996	0.47	+1.1
3,569,508	-		Sama_2996	0.47	-0.5
3,569,508	-		Sama_2996	0.47	+1.5
3,569,508	-		Sama_2996	0.47	-0.4
3,569,508	-		Sama_2996	0.47	-0.9
3,569,508	-		Sama_2996	0.47	-0.6
3,569,508	-		Sama_2996	0.47	+0.9
3,569,508	-		Sama_2996	0.47	-3.0
3,569,508	-		Sama_2996	0.47	-2.4
3,569,576	+		Sama_2996	0.50	-2.4
3,569,599	+		Sama_2996	0.52	+2.3
3,569,600	-		Sama_2996	0.52	-0.8
3,569,600	-		Sama_2996	0.52	-2.1
3,569,610	+		Sama_2996	0.52	-1.1
3,569,611	-		Sama_2996	0.52	-0.4
3,569,614	+		Sama_2996	0.52	-0.2
3,569,677	+		Sama_2996	0.56	-2.4
3,569,678	-		Sama_2996	0.56	-0.4
3,569,717	+		Sama_2996	0.58	+0.0
3,569,718	-		Sama_2996	0.58	-0.5
3,569,718	-		Sama_2996	0.58	-0.1
3,569,718	-		Sama_2996	0.58	-2.5
3,569,718	-		Sama_2996	0.58	-0.7
3,569,718	-		Sama_2996	0.58	+0.1
3,569,748	-		Sama_2996	0.59	-0.2
3,569,748	-		Sama_2996	0.59	+0.5
3,569,771	+		Sama_2996	0.61	+0.2
3,569,870	-		Sama_2996	0.66	-2.9
3,569,931	+		Sama_2996	0.69	-1.0
3,569,932	-		Sama_2996	0.69	-1.5
3,570,057	+		Sama_2996	0.76	-0.5
3,570,057	+		Sama_2996	0.76	-1.1
3,570,058	-		Sama_2996	0.76	-1.4
3,570,058	-		Sama_2996	0.76	-0.9
3,570,058	-		Sama_2996	0.76	-0.6
3,570,058	-		Sama_2996	0.76	+0.7
3,570,058	-		Sama_2996	0.76	-3.0
3,570,058	-		Sama_2996	0.76	-2.6
3,570,094	+		Sama_2996	0.78	-1.2
3,570,094	+		Sama_2996	0.78	+2.2
3,570,094	+		Sama_2996	0.78	-1.3
3,570,094	+		Sama_2996	0.78	+0.9
3,570,094	+		Sama_2996	0.78	-0.6
3,570,094	+		Sama_2996	0.78	+0.7
3,570,094	+		Sama_2996	0.78	-0.8
3,570,095	-		Sama_2996	0.78	+0.5
3,570,095	-		Sama_2996	0.78	-3.3
3,570,101	+		Sama_2996	0.78	-3.1
3,570,101	+		Sama_2996	0.78	-2.4
3,570,101	+		Sama_2996	0.78	-1.1
3,570,102	-		Sama_2996	0.78	+1.5
3,570,102	-		Sama_2996	0.78	-0.1
3,570,102	-		Sama_2996	0.78	+1.2
3,570,104	+		Sama_2996	0.78	+0.2
3,570,104	+		Sama_2996	0.78	-0.2
3,570,104	+		Sama_2996	0.78	-2.2
3,570,104	+		Sama_2996	0.78	-1.1
3,570,104	+		Sama_2996	0.78	-1.6
3,570,104	+		Sama_2996	0.78	+0.2
3,570,104	+		Sama_2996	0.78	-1.0
3,570,105	-		Sama_2996	0.78	-0.1
3,570,105	-		Sama_2996	0.78	-0.4
3,570,105	-		Sama_2996	0.78	-2.7
3,570,105	-		Sama_2996	0.78	+1.7
3,570,105	-		Sama_2996	0.78	-1.4
3,570,111	+		Sama_2996	0.79	-0.7
3,570,111	+		Sama_2996	0.79	-1.2
3,570,112	-		Sama_2996	0.79	-2.0
3,570,112	-		Sama_2996	0.79	+0.1
3,570,112	-		Sama_2996	0.79	-0.4
3,570,112	-		Sama_2996	0.79	-2.4
3,570,155	+		Sama_2996	0.81	-0.3
3,570,155	+		Sama_2996	0.81	+2.1
3,570,156	-		Sama_2996	0.81	-2.7
3,570,325	+		Sama_2996	0.90	-0.2
3,570,325	+		Sama_2996	0.90	+0.9
3,570,325	+		Sama_2996	0.90	+1.8
3,570,325	+		Sama_2996	0.90	+0.1
3,570,325	+		Sama_2996	0.90	-2.2
3,570,326	-		Sama_2996	0.90	-0.4
3,570,326	-		Sama_2996	0.90	-0.3
3,570,381	-				-2.0
3,570,381	-				-0.5
3,570,381	-				-1.8
3,570,381	-				+0.8
3,570,410	-				-0.7
3,570,414	+				-0.8
3,570,414	+				-0.6
3,570,415	-				+1.1
3,570,471	+				-0.2
3,570,471	+				-0.6
3,570,544	+				+0.8
3,570,544	+				+1.2
3,570,544	+				-0.4
3,570,544	+				-0.4
3,570,545	-				+0.5
3,570,545	-				-3.3
3,570,563	+				-1.4
3,570,564	-				-3.2
3,570,582	-				-3.0
3,570,593	+				-1.8
3,570,593	+				+0.3
3,570,593	+				-0.8
3,570,594	-				+0.2
3,570,594	-				-2.1
3,570,594	-				-0.3
3,570,594	-				+0.6
3,570,631	+		Sama_2997	0.12	-2.1
3,570,794	+		Sama_2997	0.49	+1.0
3,570,794	+		Sama_2997	0.49	-1.6
3,570,794	+		Sama_2997	0.49	-1.4
3,570,795	-		Sama_2997	0.49	+0.6
3,570,795	-		Sama_2997	0.49	-0.7
3,570,795	-		Sama_2997	0.49	+0.5
3,570,795	-		Sama_2997	0.49	-3.0
3,570,803	-		Sama_2997	0.51	+0.4
3,570,850	+		Sama_2997	0.61	+0.2
3,570,850	+		Sama_2997	0.61	-1.4
3,570,893	+		Sama_2997	0.71	+1.5
3,570,893	+		Sama_2997	0.71	+1.8
3,570,951	+		Sama_2997	0.84	-1.4
3,571,021	+				+0.2
3,571,021	+				+0.9
3,571,022	-				-0.4
3,571,022	-				-2.0
3,571,046	-				-1.1
3,571,046	-				-0.1
3,571,053	+				+0.7
3,571,053	+				+0.3
3,571,054	-				-1.1
3,571,054	-				+0.3
3,571,067	+				-2.0
3,571,067	+				-2.5
3,571,067	+				+0.0
3,571,067	+				-0.1
3,571,068	-				+1.1
3,571,068	-				+1.4
3,571,100	+				-0.0
3,571,122	-				-0.8
3,571,167	-				+0.1
3,571,167	-				-1.8
3,571,188	+				+0.2
3,571,188	+				+0.9
3,571,188	+				-3.1
3,571,189	-				-0.6
3,571,189	-				+0.0
3,571,189	-				-0.9
3,571,299	+				-0.0
3,571,313	+				+0.8
3,571,354	+		Sama_2998	0.11	-2.6
3,571,389	-		Sama_2998	0.13	+0.9
3,571,422	+		Sama_2998	0.15	+1.7
3,571,422	+		Sama_2998	0.15	-0.4
3,571,422	+		Sama_2998	0.15	-0.1
3,571,422	+		Sama_2998	0.15	+0.0
3,571,423	-		Sama_2998	0.15	+1.0
3,571,423	-		Sama_2998	0.15	-0.7
3,571,428	+		Sama_2998	0.16	+1.0
3,571,428	+		Sama_2998	0.16	+0.1
3,571,428	+		Sama_2998	0.16	-1.1
3,571,428	+		Sama_2998	0.16	-1.1
3,571,428	+		Sama_2998	0.16	-0.4
3,571,428	+		Sama_2998	0.16	-2.1
3,571,429	-		Sama_2998	0.16	-1.4
3,571,429	-		Sama_2998	0.16	-0.3
3,571,429	-		Sama_2998	0.16	-0.2
3,571,500	+		Sama_2998	0.20	-1.7