Strain Fitness in Shewanella amazonensis SB2B around Sama_2882

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,421,871	+		Sama_2880	0.82	+0.2
3,421,871	+		Sama_2880	0.82	+1.3
3,421,871	+		Sama_2880	0.82	+1.2
3,421,871	+		Sama_2880	0.82	-1.4
3,421,872	-		Sama_2880	0.82	-0.5
3,421,872	-		Sama_2880	0.82	-1.0
3,421,872	-		Sama_2880	0.82	-1.2
3,421,875	+		Sama_2880	0.82	-0.1
3,421,877	+		Sama_2880	0.82	-2.7
3,421,877	+		Sama_2880	0.82	+0.7
3,421,877	+		Sama_2880	0.82	-2.3
3,421,877	+		Sama_2880	0.82	-2.9
3,421,877	+		Sama_2880	0.82	-0.6
3,421,877	+		Sama_2880	0.82	+0.5
3,421,877	+		Sama_2880	0.82	-0.6
3,421,878	-		Sama_2880	0.82	-0.2
3,421,878	-		Sama_2880	0.82	-2.5
3,421,878	-		Sama_2880	0.82	+0.6
3,421,878	-		Sama_2880	0.82	-0.8
3,421,878	-		Sama_2880	0.82	-1.5
3,421,878	-		Sama_2880	0.82	+0.5
3,421,878	-		Sama_2880	0.82	-1.4
3,421,881	+		Sama_2880	0.82	-2.6
3,421,882	-		Sama_2880	0.82	+1.7
3,421,882	-		Sama_2880	0.82	+0.2
3,421,954	+		Sama_2880	0.87	-1.2
3,421,954	+		Sama_2880	0.87	-0.1
3,421,954	+		Sama_2880	0.87	-0.2
3,421,954	+		Sama_2880	0.87	-0.4
3,421,955	-		Sama_2880	0.87	+2.6
3,421,955	-		Sama_2880	0.87	+1.2
3,422,034	+				+1.9
3,422,035	-				-2.4
3,422,084	+				-0.2
3,422,085	-				-0.2
3,422,085	-				+1.2
3,422,085	-				-1.3
3,422,085	-				+0.1
3,422,100	+				-2.2
3,422,101	-				-2.3
3,422,101	-				-3.3
3,422,156	+				-1.4
3,422,157	-				-0.3
3,422,157	-				-1.6
3,422,157	-				+0.4
3,422,160	+				+0.7
3,422,160	+				+0.7
3,422,160	+				+0.3
3,422,161	-				-1.4
3,422,161	-				+1.7
3,422,161	-				+1.3
3,422,170	+				-1.2
3,422,178	+				-3.4
3,422,178	+				+0.9
3,422,178	+				-0.8
3,422,178	+				-0.4
3,422,178	+				+1.4
3,422,178	+				-1.6
3,422,178	+				-0.0
3,422,178	+				+0.3
3,422,178	+				+2.7
3,422,178	+				+0.8
3,422,178	+				+0.7
3,422,178	+				-0.3
3,422,178	+				+1.5
3,422,178	+				+2.2
3,422,178	+				+1.7
3,422,178	+				+0.5
3,422,178	+				+0.2
3,422,178	+				-0.4
3,422,178	+				+1.5
3,422,178	+				-0.5
3,422,178	+				-1.4
3,422,178	+				-1.4
3,422,178	+				-0.8
3,422,178	+				+0.7
3,422,179	-				-1.6
3,422,179	-				+1.2
3,422,179	-				-0.0
3,422,179	-				-0.6
3,422,179	-				-0.4
3,422,179	-				+1.8
3,422,179	-				+0.6
3,422,179	-				-0.8
3,422,179	-				+0.6
3,422,179	-				+0.6
3,422,179	-				+0.3
3,422,179	-				-2.2
3,422,179	-				+0.5
3,422,179	-				+0.9
3,422,179	-				-2.7
3,422,179	-				+0.7
3,422,179	-				-0.3
3,422,179	-				+1.7
3,422,215	+				-0.6
3,422,215	+				+0.3
3,422,215	+				-0.0
3,422,215	+				-1.1
3,422,215	+				-1.2
3,422,215	+				-0.8
3,422,215	+				-0.8
3,422,216	-				-1.4
3,422,216	-				-1.4
3,422,216	-				-2.5
3,422,216	-				-3.1
3,422,217	+				-0.4
3,422,217	+				+0.0
3,422,217	+				+0.6
3,422,217	+				-0.7
3,422,217	+				-2.2
3,422,218	-				-1.0
3,422,218	-				-0.0
3,422,229	-				-0.0
3,422,229	-				-1.8
3,422,230	+				+0.3
3,422,231	-				+0.2
3,422,231	-				-0.6
3,422,231	-				-2.2
3,422,236	+				-0.5
3,422,236	+				-0.6
3,422,236	+				+0.3
3,422,237	-				+0.2
3,422,237	-				-0.1
3,422,237	-				+0.3
3,422,237	-				-0.1
3,422,239	+				+0.0
3,422,239	+				+0.7
3,422,240	-				+1.5
3,422,240	-				+1.1
3,422,267	+				+0.9
3,422,268	-				-2.8
3,422,268	-				-0.0
3,422,268	-				-0.3
3,422,268	-				+0.2
3,422,311	+				+1.0
3,422,312	-				-0.4
3,422,415	+		Sama_2881	0.20	-2.4
3,422,443	+		Sama_2881	0.25	-0.8
3,422,443	+		Sama_2881	0.25	-1.3
3,422,443	+		Sama_2881	0.25	+1.4
3,422,443	+		Sama_2881	0.25	-1.6
3,422,443	+		Sama_2881	0.25	+0.2
3,422,443	+		Sama_2881	0.25	-0.7
3,422,443	+		Sama_2881	0.25	-2.3
3,422,443	+		Sama_2881	0.25	+1.0
3,422,443	+		Sama_2881	0.25	-1.6
3,422,443	+		Sama_2881	0.25	-1.4
3,422,443	+		Sama_2881	0.25	-0.7
3,422,444	-		Sama_2881	0.25	-0.5
3,422,444	-		Sama_2881	0.25	+1.2
3,422,444	-		Sama_2881	0.25	-1.6
3,422,444	-		Sama_2881	0.25	+0.1
3,422,444	-		Sama_2881	0.25	-0.8
3,422,444	-		Sama_2881	0.25	-1.4
3,422,444	-		Sama_2881	0.25	-0.2
3,422,444	-		Sama_2881	0.25	+3.0
3,422,444	-		Sama_2881	0.25	+0.3
3,422,444	-		Sama_2881	0.25	-1.4
3,422,444	-		Sama_2881	0.25	-3.3
3,422,444	-		Sama_2881	0.25	-1.4
3,422,444	-		Sama_2881	0.25	-0.2
3,422,444	-		Sama_2881	0.25	-0.2
3,422,444	-		Sama_2881	0.25	-0.9
3,422,444	-		Sama_2881	0.25	-1.8
3,422,479	-		Sama_2881	0.31	+0.2
3,422,479	-		Sama_2881	0.31	-1.0
3,422,479	-		Sama_2881	0.31	+1.4
3,422,479	-		Sama_2881	0.31	+0.6
3,422,479	-		Sama_2881	0.31	-0.2
3,422,674	+		Sama_2881	0.68	+0.5
3,422,675	-		Sama_2881	0.68	-1.4
3,422,675	-		Sama_2881	0.68	-1.0
3,422,675	-		Sama_2881	0.68	-2.2
3,422,675	-		Sama_2881	0.68	+0.7
3,422,675	-		Sama_2881	0.68	+0.3
3,422,757	+		Sama_2881	0.83	+0.5
3,422,757	+		Sama_2881	0.83	-1.4
3,422,757	+		Sama_2881	0.83	+0.2
3,422,757	+		Sama_2881	0.83	-0.4
3,422,757	+		Sama_2881	0.83	-1.8
3,422,757	+		Sama_2881	0.83	-1.2
3,422,757	+		Sama_2881	0.83	-1.0
3,422,758	-		Sama_2881	0.83	+1.8
3,422,758	-		Sama_2881	0.83	-1.4
3,422,758	-		Sama_2881	0.83	+0.3
3,422,758	-		Sama_2881	0.83	+0.2
3,422,758	-		Sama_2881	0.83	-1.2
3,422,758	-		Sama_2881	0.83	-0.7
3,422,761	-		Sama_2881	0.84	-0.8
3,422,761	-		Sama_2881	0.84	-0.3
3,422,825	+				-1.1
3,422,826	-				-0.7
3,422,826	-				-2.6
3,422,870	+				+1.2
3,422,870	+				+0.3
3,422,870	+				-2.5
3,422,870	+				-0.9
3,422,870	+				+0.5
3,422,871	-				-1.4
3,422,871	-				+0.8
3,422,871	-				+0.8
3,422,959	+		Sama_2882	0.22	+1.0
3,422,960	-		Sama_2882	0.22	-2.2
3,422,960	-		Sama_2882	0.22	-0.4
3,422,960	-		Sama_2882	0.22	-1.7
3,422,971	+		Sama_2882	0.24	-1.7
3,422,971	+		Sama_2882	0.24	+0.9
3,422,977	+		Sama_2882	0.25	-0.1
3,422,992	-		Sama_2882	0.28	-0.3
3,422,992	-		Sama_2882	0.28	-2.3
3,422,992	-		Sama_2882	0.28	+0.6
3,423,001	-		Sama_2882	0.29	+0.7
3,423,021	-		Sama_2882	0.33	+0.9
3,423,052	+		Sama_2882	0.39	+1.9
3,423,052	+		Sama_2882	0.39	+0.3
3,423,052	+		Sama_2882	0.39	+2.2
3,423,053	-		Sama_2882	0.39	+0.4
3,423,053	-		Sama_2882	0.39	-2.0
3,423,053	-		Sama_2882	0.39	+0.2
3,423,053	-		Sama_2882	0.39	-1.8
3,423,070	+		Sama_2882	0.42	+0.5
3,423,070	+		Sama_2882	0.42	+0.2
3,423,070	+		Sama_2882	0.42	-1.5
3,423,070	+		Sama_2882	0.42	+1.2
3,423,071	-		Sama_2882	0.42	-0.0
3,423,071	-		Sama_2882	0.42	+0.6
3,423,071	-		Sama_2882	0.42	-1.0
3,423,072	+		Sama_2882	0.43	+3.2
3,423,072	+		Sama_2882	0.43	-2.2
3,423,072	+		Sama_2882	0.43	+1.2
3,423,072	+		Sama_2882	0.43	+2.2
3,423,072	+		Sama_2882	0.43	+0.5
3,423,072	+		Sama_2882	0.43	+0.2
3,423,072	+		Sama_2882	0.43	-1.2
3,423,073	-		Sama_2882	0.43	-1.0
3,423,073	-		Sama_2882	0.43	-1.7
3,423,073	-		Sama_2882	0.43	-0.4
3,423,073	-		Sama_2882	0.43	-2.5
3,423,073	-		Sama_2882	0.43	-1.7
3,423,073	-		Sama_2882	0.43	-1.7
3,423,091	+		Sama_2882	0.46	+0.6
3,423,176	-		Sama_2882	0.62	+1.0
3,423,230	+		Sama_2882	0.72	+0.5
3,423,230	+		Sama_2882	0.72	-1.2
3,423,230	+		Sama_2882	0.72	-1.4
3,423,230	+		Sama_2882	0.72	+1.2
3,423,230	+		Sama_2882	0.72	+1.0
3,423,230	+		Sama_2882	0.72	-3.2
3,423,230	+		Sama_2882	0.72	+0.1
3,423,230	+		Sama_2882	0.72	+0.4
3,423,230	+		Sama_2882	0.72	+1.5
3,423,230	+		Sama_2882	0.72	-0.4
3,423,231	-		Sama_2882	0.72	-1.5
3,423,231	-		Sama_2882	0.72	-0.6
3,423,364	+				+1.7
3,423,393	+				-0.2
3,423,393	+				+0.2
3,423,418	+				-2.3
3,423,418	+				-0.3
3,423,418	+				+0.3
3,423,418	+				-0.3
3,423,418	+				-0.4
3,423,418	+				+0.0
3,423,418	+				-1.7
3,423,419	-				+1.0
3,423,431	-				-0.5
3,423,431	-				+0.2
3,423,431	-				-0.6
3,423,487	+				-0.8
3,423,487	+				-0.4
3,423,488	-				+0.6
3,423,524	+				+3.0
3,423,540	+				+0.2
3,423,540	+				+2.7
3,423,540	+				-0.8
3,423,540	+				+0.8
3,423,541	-				-2.1
3,423,541	-				+0.8
3,423,575	+				-1.2
3,423,575	+				-2.8
3,423,576	-				+0.3
3,423,576	-				+0.4
3,423,576	-				+0.6
3,423,576	-				-1.7
3,423,595	+				-0.1
3,423,595	+				+0.6
3,423,596	-				+0.2
3,423,596	-				-0.4
3,423,608	+				+1.3
3,423,608	+				-0.1
3,423,609	-				+1.1
3,423,668	+				-1.8
3,423,668	+				+0.3
3,423,668	+				-0.3
3,423,668	+				-0.0
3,423,668	+				-1.8
3,423,668	+				+0.9
3,423,669	-				+0.3
3,423,669	-				+0.5
3,423,669	-				-1.4
3,423,669	-				-0.4
3,423,669	-				-0.3
3,423,669	-				+1.8
3,423,669	-				-0.4
3,423,671	+				-0.8
3,423,672	-				+0.2
3,423,672	-				-2.4
3,423,672	-				-0.1
3,423,811	+		Sama_2883	0.19	+0.3
3,423,811	+		Sama_2883	0.19	-1.5
3,423,811	+		Sama_2883	0.19	+0.3
3,423,811	+		Sama_2883	0.19	+1.3
3,423,811	+		Sama_2883	0.19	-0.8
3,423,811	+		Sama_2883	0.19	-3.2
3,423,811	+		Sama_2883	0.19	+1.0
3,423,812	-		Sama_2883	0.19	-1.8
3,423,812	-		Sama_2883	0.19	+0.3
3,423,812	-		Sama_2883	0.19	-0.1
3,423,866	+		Sama_2883	0.23	+1.2
3,423,892	+		Sama_2883	0.25	-0.6
3,423,912	+		Sama_2883	0.27	-1.2
3,423,912	+		Sama_2883	0.27	+1.9
3,423,913	-		Sama_2883	0.27	+0.3
3,423,951	+		Sama_2883	0.30	-1.5
3,423,952	-		Sama_2883	0.30	-1.0
3,423,952	-		Sama_2883	0.30	+1.2
3,423,952	-		Sama_2883	0.30	+0.2
3,424,101	+		Sama_2883	0.42	-0.3
3,424,101	+		Sama_2883	0.42	+1.1
3,424,101	+		Sama_2883	0.42	-0.1
3,424,101	+		Sama_2883	0.42	+2.0
3,424,102	-		Sama_2883	0.42	+0.5
3,424,102	-		Sama_2883	0.42	+0.0
3,424,102	-		Sama_2883	0.42	+0.4
3,424,102	-		Sama_2883	0.42	+1.2
3,424,102	-		Sama_2883	0.42	+0.8
3,424,102	-		Sama_2883	0.42	+0.6
3,424,102	-		Sama_2883	0.42	-0.5
3,424,113	+		Sama_2883	0.43	-0.5
3,424,113	+		Sama_2883	0.43	-1.8
3,424,113	+		Sama_2883	0.43	-0.3
3,424,114	-		Sama_2883	0.43	-0.8
3,424,114	-		Sama_2883	0.43	+2.6
3,424,114	-		Sama_2883	0.43	-1.8
3,424,114	-		Sama_2883	0.43	+1.2
3,424,114	-		Sama_2883	0.43	-1.2
3,424,199	+		Sama_2883	0.50	-1.4
3,424,199	+		Sama_2883	0.50	+0.3
3,424,199	+		Sama_2883	0.50	-0.8
3,424,199	+		Sama_2883	0.50	+0.3
3,424,199	+		Sama_2883	0.50	+0.3
3,424,199	+		Sama_2883	0.50	+0.9
3,424,199	+		Sama_2883	0.50	-0.4
3,424,200	-		Sama_2883	0.50	+2.7
3,424,200	-		Sama_2883	0.50	-0.5
3,424,200	-		Sama_2883	0.50	-0.3
3,424,210	+		Sama_2883	0.51	-0.8
3,424,237	-		Sama_2883	0.53	-2.0
3,424,237	-		Sama_2883	0.53	+0.2
3,424,240	+		Sama_2883	0.53	+0.4
3,424,240	+		Sama_2883	0.53	-0.5
3,424,240	+		Sama_2883	0.53	+2.0
3,424,241	-		Sama_2883	0.53	+0.4
3,424,296	-		Sama_2883	0.58	-0.0
3,424,296	-		Sama_2883	0.58	-0.3
3,424,296	-		Sama_2883	0.58	-0.1
3,424,317	+		Sama_2883	0.60	-1.4
3,424,317	+		Sama_2883	0.60	+0.3
3,424,318	-		Sama_2883	0.60	-1.0
3,424,318	-		Sama_2883	0.60	+0.7
3,424,352	+		Sama_2883	0.62	+4.1
3,424,353	-		Sama_2883	0.62	+0.2
3,424,353	-		Sama_2883	0.62	-0.2
3,424,356	+		Sama_2883	0.63	-1.2
3,424,356	+		Sama_2883	0.63	-0.7
3,424,356	+		Sama_2883	0.63	-0.8
3,424,356	+		Sama_2883	0.63	-0.3
3,424,356	+		Sama_2883	0.63	-0.8
3,424,357	-		Sama_2883	0.63	+0.2