Strain Fitness in Shewanella amazonensis SB2B around Sama_2845

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,383,542	+				+0.0
3,383,543	-				+0.0
3,383,592	+				-1.0
3,383,593	-				-0.3
3,383,603	+				-0.3
3,383,604	-				-1.3
3,383,647	+		Sama_2843	0.14	-1.2
3,383,647	+		Sama_2843	0.14	+0.1
3,383,648	-		Sama_2843	0.14	-1.4
3,383,648	-		Sama_2843	0.14	+0.7
3,383,648	-		Sama_2843	0.14	-0.6
3,383,648	-		Sama_2843	0.14	+0.4
3,383,648	-		Sama_2843	0.14	+0.1
3,383,663	+		Sama_2843	0.19	+0.1
3,383,663	+		Sama_2843	0.19	+0.4
3,383,663	+		Sama_2843	0.19	-0.1
3,383,663	+		Sama_2843	0.19	+1.1
3,383,663	+		Sama_2843	0.19	+2.4
3,383,663	+		Sama_2843	0.19	+1.1
3,383,664	-		Sama_2843	0.19	+1.9
3,383,664	-		Sama_2843	0.19	-3.2
3,383,664	-		Sama_2843	0.19	+0.1
3,383,664	-		Sama_2843	0.19	+1.5
3,383,664	-		Sama_2843	0.19	+0.4
3,383,664	-		Sama_2843	0.19	-0.7
3,383,664	-		Sama_2843	0.19	+0.9
3,383,665	+		Sama_2843	0.20	-2.7
3,383,665	+		Sama_2843	0.20	+0.8
3,383,665	+		Sama_2843	0.20	-1.7
3,383,665	+		Sama_2843	0.20	-0.5
3,383,665	+		Sama_2843	0.20	-2.2
3,383,665	+		Sama_2843	0.20	-0.2
3,383,665	+		Sama_2843	0.20	+1.0
3,383,666	-		Sama_2843	0.20	+0.8
3,383,666	-		Sama_2843	0.20	+1.1
3,383,666	-		Sama_2843	0.20	+0.6
3,383,666	-		Sama_2843	0.20	-1.1
3,383,666	-		Sama_2843	0.20	-0.8
3,383,666	-		Sama_2843	0.20	+0.4
3,383,666	-		Sama_2843	0.20	+0.5
3,383,666	-		Sama_2843	0.20	-0.0
3,383,666	-		Sama_2843	0.20	-0.6
3,383,666	-		Sama_2843	0.20	-0.3
3,383,672	-		Sama_2843	0.22	+1.5
3,383,689	+		Sama_2843	0.28	+1.1
3,383,689	+		Sama_2843	0.28	+1.0
3,383,689	+		Sama_2843	0.28	+1.0
3,383,689	+		Sama_2843	0.28	-0.3
3,383,689	+		Sama_2843	0.28	+0.7
3,383,689	+		Sama_2843	0.28	-3.2
3,383,690	-		Sama_2843	0.28	+0.5
3,383,690	-		Sama_2843	0.28	-0.4
3,383,690	-		Sama_2843	0.28	+1.4
3,383,696	-		Sama_2843	0.30	+2.1
3,383,696	-		Sama_2843	0.30	+0.4
3,383,700	+		Sama_2843	0.31	-0.0
3,383,701	-		Sama_2843	0.31	+0.9
3,383,701	-		Sama_2843	0.31	-0.9
3,383,701	-		Sama_2843	0.31	-0.0
3,383,721	+		Sama_2843	0.38	-0.9
3,383,721	+		Sama_2843	0.38	-2.2
3,383,721	+		Sama_2843	0.38	+0.1
3,383,721	+		Sama_2843	0.38	+1.5
3,383,728	+		Sama_2843	0.40	-1.2
3,383,728	+		Sama_2843	0.40	-0.2
3,383,729	-		Sama_2843	0.40	+0.2
3,383,729	-		Sama_2843	0.40	+1.0
3,383,729	-		Sama_2843	0.40	+0.6
3,383,764	+		Sama_2843	0.52	+0.6
3,383,765	-		Sama_2843	0.52	-0.1
3,383,839	+		Sama_2843	0.76	-0.0
3,383,839	+		Sama_2843	0.76	-0.4
3,383,839	+		Sama_2843	0.76	-1.5
3,383,839	+		Sama_2843	0.76	-0.2
3,383,840	-		Sama_2843	0.76	+0.9
3,383,840	-		Sama_2843	0.76	+0.2
3,383,854	+		Sama_2843	0.81	-0.5
3,383,855	+		Sama_2843	0.81	+1.0
3,383,870	-		Sama_2843	0.86	+0.9
3,383,910	+				+0.1
3,383,910	+				+1.8
3,383,910	+				-0.3
3,383,911	-				+0.4
3,383,911	-				+0.1
3,383,985	-				-2.0
3,384,006	-				-0.3
3,384,060	+		Sama_2844	0.13	+0.9
3,384,060	+		Sama_2844	0.13	-0.9
3,384,060	+		Sama_2844	0.13	+1.1
3,384,066	+		Sama_2844	0.14	+1.6
3,384,067	-		Sama_2844	0.14	+0.6
3,384,222	+		Sama_2844	0.52	+0.1
3,384,319	-		Sama_2844	0.76	-0.0
3,384,338	+		Sama_2844	0.81	-0.1
3,384,413	+				-0.3
3,384,511	+				+0.5
3,384,527	-				+0.1
3,384,527	-				+0.6
3,384,603	-		Sama_2845	0.17	-0.9
3,384,607	+		Sama_2845	0.18	-1.2
3,384,607	+		Sama_2845	0.18	-2.2
3,384,608	-		Sama_2845	0.18	-0.1
3,384,618	+		Sama_2845	0.20	+0.4
3,384,629	+		Sama_2845	0.23	+0.5
3,384,633	+		Sama_2845	0.24	-2.0
3,384,633	+		Sama_2845	0.24	+0.9
3,384,634	-		Sama_2845	0.24	+0.4
3,384,644	-		Sama_2845	0.26	-1.2
3,384,644	-		Sama_2845	0.26	+0.9
3,384,663	-		Sama_2845	0.31	+1.4
3,384,674	+		Sama_2845	0.33	+0.8
3,384,676	+		Sama_2845	0.34	-3.1
3,384,714	-		Sama_2845	0.42	+1.2
3,384,840	-		Sama_2845	0.70	-0.5
3,384,850	+		Sama_2845	0.73	+2.0
3,384,888	+		Sama_2845	0.81	-2.6
3,384,923	+		Sama_2845	0.89	-3.0
3,384,925	+		Sama_2845	0.90	+0.6
3,384,925	+		Sama_2845	0.90	+1.1
3,384,925	+		Sama_2845	0.90	+0.3
3,384,930	-				-1.5
3,384,968	+				+0.1
3,385,020	+				+1.9
3,385,021	-				-0.1
3,385,043	-				-0.8
3,385,047	+				+0.6
3,385,048	-				+1.3
3,385,048	-				-0.7
3,385,048	-				-0.4
3,385,048	-				-1.4
3,385,048	-				+1.1
3,385,084	+				-2.3
3,385,096	+				+1.6
3,385,110	-				-0.7
3,385,130	+				-0.9
3,385,131	-				-0.7
3,385,193	-		Sama_2846	0.13	+0.1
3,385,195	+		Sama_2846	0.13	+1.3
3,385,237	+		Sama_2846	0.17	-1.7
3,385,238	-		Sama_2846	0.17	+1.1
3,385,238	-		Sama_2846	0.17	+1.6
3,385,325	+		Sama_2846	0.26	+2.1
3,385,325	+		Sama_2846	0.26	+0.1
3,385,363	+		Sama_2846	0.30	+0.4
3,385,437	-		Sama_2846	0.38	-1.9
3,385,438	+		Sama_2846	0.38	+0.8
3,385,438	+		Sama_2846	0.38	+0.5
3,385,438	+		Sama_2846	0.38	+1.1
3,385,438	+		Sama_2846	0.38	+0.4
3,385,438	+		Sama_2846	0.38	+1.5
3,385,438	+		Sama_2846	0.38	-2.2
3,385,439	-		Sama_2846	0.39	+0.5
3,385,599	+		Sama_2846	0.55	-0.4
3,385,718	-		Sama_2846	0.68	+1.1
3,385,755	-		Sama_2846	0.72	-0.6
3,385,838	+		Sama_2846	0.81	+0.6
3,385,859	-		Sama_2846	0.83	+1.4
3,385,864	+		Sama_2846	0.83	-0.1
3,385,937	+				+1.4