Strain Fitness in Shewanella amazonensis SB2B around Sama_2741

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,274,569	+		Sama_2740	0.60	-4.2
3,274,569	+		Sama_2740	0.60	-0.3
3,274,570	-		Sama_2740	0.60	-3.1
3,274,596	+		Sama_2740	0.62	-0.5
3,274,597	-		Sama_2740	0.63	+3.1
3,274,597	-		Sama_2740	0.63	-0.5
3,274,597	-		Sama_2740	0.63	+0.2
3,274,597	-		Sama_2740	0.63	+0.1
3,274,617	+		Sama_2740	0.64	-0.5
3,274,617	+		Sama_2740	0.64	-2.1
3,274,618	-		Sama_2740	0.64	+1.0
3,274,618	-		Sama_2740	0.64	+0.5
3,274,622	+		Sama_2740	0.64	+0.5
3,274,623	-		Sama_2740	0.64	-0.4
3,274,644	-		Sama_2740	0.66	-0.9
3,274,691	+		Sama_2740	0.70	-4.4
3,274,692	-		Sama_2740	0.70	-1.2
3,274,697	+		Sama_2740	0.70	+0.1
3,274,697	+		Sama_2740	0.70	-0.3
3,274,697	+		Sama_2740	0.70	-2.1
3,274,698	-		Sama_2740	0.70	-2.1
3,274,698	-		Sama_2740	0.70	-0.9
3,274,707	+		Sama_2740	0.71	+0.1
3,274,707	+		Sama_2740	0.71	-1.6
3,274,707	+		Sama_2740	0.71	-0.2
3,274,707	+		Sama_2740	0.71	-2.2
3,274,707	+		Sama_2740	0.71	-1.9
3,274,707	+		Sama_2740	0.71	+1.9
3,274,707	+		Sama_2740	0.71	-2.4
3,274,707	+		Sama_2740	0.71	-0.4
3,274,708	-		Sama_2740	0.71	+0.2
3,274,708	-		Sama_2740	0.71	+0.4
3,274,708	-		Sama_2740	0.71	-0.3
3,274,721	+		Sama_2740	0.72	+1.0
3,274,721	+		Sama_2740	0.72	-0.2
3,274,722	-		Sama_2740	0.72	-1.4
3,274,722	-		Sama_2740	0.72	-0.4
3,274,722	-		Sama_2740	0.72	-1.9
3,274,738	-		Sama_2740	0.73	+0.2
3,274,831	+		Sama_2740	0.80	-0.3
3,274,831	+		Sama_2740	0.80	-0.1
3,274,831	+		Sama_2740	0.80	+0.6
3,274,831	+		Sama_2740	0.80	-0.1
3,274,831	+		Sama_2740	0.80	+0.2
3,274,832	-		Sama_2740	0.80	-2.1
3,274,832	-		Sama_2740	0.80	+1.4
3,274,832	-		Sama_2740	0.80	-0.1
3,274,832	-		Sama_2740	0.80	-0.0
3,274,832	-		Sama_2740	0.80	-3.5
3,274,854	-		Sama_2740	0.82	-0.4
3,274,874	-		Sama_2740	0.83	-0.9
3,274,874	-		Sama_2740	0.83	+0.3
3,275,007	+				-1.1
3,275,008	-				+1.1
3,275,045	+				-0.1
3,275,045	+				-1.1
3,275,058	+				-2.7
3,275,058	+				-0.2
3,275,058	+				+1.4
3,275,058	+				-0.2
3,275,058	+				+1.5
3,275,058	+				+0.4
3,275,058	+				+0.3
3,275,058	+				+0.4
3,275,058	+				-2.9
3,275,058	+				-0.5
3,275,058	+				+0.4
3,275,059	-				-0.3
3,275,059	-				-0.3
3,275,059	-				-1.2
3,275,059	-				+0.0
3,275,059	-				-0.5
3,275,059	-				-1.2
3,275,059	-				-1.7
3,275,059	-				-0.3
3,275,059	-				-1.2
3,275,108	+				-2.2
3,275,108	+				-0.0
3,275,108	+				-0.1
3,275,108	+				+0.4
3,275,108	+				+0.2
3,275,109	-				-1.7
3,275,112	+				+1.4
3,275,113	-				+0.7
3,275,113	-				-1.9
3,275,134	+				-2.4
3,275,134	+				+1.5
3,275,142	+				-0.6
3,275,142	+				+1.8
3,275,198	+				-1.1
3,275,199	-				-0.7
3,275,215	-				-0.9
3,275,246	+				-0.5
3,275,325	+				+0.2
3,275,328	+				+1.6
3,275,450	+				+0.5
3,275,450	+				-1.5
3,275,451	-				+0.2
3,275,503	+				+0.4
3,275,503	+				+0.7
3,275,515	+				-0.1
3,275,516	-				-1.9
3,275,516	-				+0.1
3,275,516	-				-1.2
3,275,564	+				+0.8
3,275,565	-				+1.2
3,275,594	-				+2.1
3,275,594	-				+1.5
3,275,594	-				+0.5
3,275,804	-		Sama_2741	0.32	+1.1
3,275,804	-		Sama_2741	0.32	+0.4
3,275,861	+		Sama_2741	0.39	-0.3
3,275,867	-		Sama_2741	0.40	-0.3
3,275,867	-		Sama_2741	0.40	+2.3
3,275,929	+		Sama_2741	0.49	+0.1
3,275,929	+		Sama_2741	0.49	-0.7
3,275,929	+		Sama_2741	0.49	-1.1
3,275,929	+		Sama_2741	0.49	-0.4
3,275,929	+		Sama_2741	0.49	+1.4
3,275,930	-		Sama_2741	0.49	-1.9
3,275,930	-		Sama_2741	0.49	+0.4
3,275,930	-		Sama_2741	0.49	-0.7
3,275,936	+		Sama_2741	0.49	+1.1
3,275,936	+		Sama_2741	0.49	-0.5
3,275,937	-		Sama_2741	0.50	-0.0
3,276,019	+		Sama_2741	0.61	-0.8
3,276,020	-		Sama_2741	0.61	-0.9
3,276,158	+		Sama_2741	0.79	+1.4
3,276,159	-		Sama_2741	0.79	-1.9
3,276,219	+		Sama_2741	0.88	-1.9
3,276,219	+		Sama_2741	0.88	-1.9
3,276,220	-		Sama_2741	0.88	-0.2
3,276,220	-		Sama_2741	0.88	-0.6
3,276,261	+				-1.5
3,276,261	+				-0.5
3,276,261	+				-2.2
3,276,262	-				-1.2
3,276,262	-				-1.4
3,276,262	-				-1.2
3,276,262	-				+0.5
3,276,262	-				+0.6
3,276,262	-				-1.6
3,276,262	-				-2.1
3,276,309	+				+1.3
3,276,309	+				+1.2
3,276,342	+				-0.1
3,276,342	+				-1.9
3,276,342	+				+1.7
3,276,342	+				-1.9
3,276,342	+				-2.8
3,276,342	+				-2.6
3,276,342	+				-2.1
3,276,342	+				-0.9
3,276,342	+				+1.7
3,276,342	+				+0.4
3,276,342	+				+0.2
3,276,342	+				-1.2
3,276,342	+				-0.2
3,276,342	+				+2.4
3,276,342	+				+1.7
3,276,342	+				+1.4
3,276,342	+				+0.6
3,276,343	-				-1.2
3,276,343	-				-0.1
3,276,343	-				-0.1
3,276,343	-				-1.7
3,276,343	-				+0.7
3,276,343	-				+0.1
3,276,343	-				-1.9
3,276,343	-				+0.4
3,276,343	-				+3.4
3,276,344	+				-2.6
3,276,344	+				+2.3
3,276,344	+				-2.2
3,276,360	-				+0.1
3,276,360	-				+0.1
3,276,364	+				-0.6
3,276,365	-				+1.2
3,276,365	-				-0.9
3,276,381	+				+0.1
3,276,381	+				-2.1
3,276,381	+				+0.8
3,276,382	-				-1.3
3,276,496	+				+1.5
3,276,609	+		Sama_2742	0.13	+1.9
3,276,742	+		Sama_2742	0.20	+1.7
3,276,825	+		Sama_2742	0.24	+0.8
3,277,044	+		Sama_2742	0.36	+0.5
3,277,044	+		Sama_2742	0.36	-0.1
3,277,044	+		Sama_2742	0.36	-1.5
3,277,045	-		Sama_2742	0.36	+1.7
3,277,132	+		Sama_2742	0.41	+2.7
3,277,183	+		Sama_2742	0.44	-1.5
3,277,184	-		Sama_2742	0.44	+1.3
3,277,198	+		Sama_2742	0.45	-1.5
3,277,199	-		Sama_2742	0.45	+1.4
3,277,199	-		Sama_2742	0.45	-0.5