Strain Fitness in Shewanella amazonensis SB2B around Sama_2666

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,191,167	+				-1.3
3,191,168	-				+0.8
3,191,168	-				-0.2
3,191,168	-				-0.5
3,191,168	-				-1.9
3,191,269	+				-1.2
3,191,269	+				+0.2
3,191,269	+				-3.0
3,191,270	-				-1.8
3,191,270	-				-0.4
3,191,277	+				-0.1
3,191,278	-				-1.9
3,191,278	-				+0.1
3,191,278	-				-1.3
3,191,278	-				+0.6
3,191,355	+		Sama_2665	0.11	+1.1
3,191,355	+		Sama_2665	0.11	-1.5
3,191,412	-		Sama_2665	0.17	-0.3
3,191,456	-		Sama_2665	0.22	-1.4
3,191,478	-		Sama_2665	0.25	+1.2
3,191,503	-		Sama_2665	0.27	+0.2
3,191,532	+		Sama_2665	0.31	+1.8
3,191,533	-		Sama_2665	0.31	+0.7
3,191,539	+		Sama_2665	0.31	-0.5
3,191,539	+		Sama_2665	0.31	+1.1
3,191,539	+		Sama_2665	0.31	+0.3
3,191,539	+		Sama_2665	0.31	-1.3
3,191,539	+		Sama_2665	0.31	-1.9
3,191,540	-		Sama_2665	0.31	-0.9
3,191,540	-		Sama_2665	0.31	-0.5
3,191,540	-		Sama_2665	0.31	+0.2
3,191,540	-		Sama_2665	0.31	-1.3
3,191,546	+		Sama_2665	0.32	-3.2
3,191,546	+		Sama_2665	0.32	-1.4
3,191,547	-		Sama_2665	0.32	+0.4
3,191,630	+		Sama_2665	0.41	-3.5
3,191,630	+		Sama_2665	0.41	+0.2
3,191,630	+		Sama_2665	0.41	+0.1
3,191,631	-		Sama_2665	0.42	+2.9
3,191,631	-		Sama_2665	0.42	-1.5
3,191,641	+		Sama_2665	0.43	+0.6
3,191,682	-		Sama_2665	0.47	+0.8
3,191,682	-		Sama_2665	0.47	+0.9
3,191,682	-		Sama_2665	0.47	+0.6
3,191,699	-		Sama_2665	0.49	-0.9
3,191,699	-		Sama_2665	0.49	+0.6
3,191,699	-		Sama_2665	0.49	-0.1
3,191,716	+		Sama_2665	0.51	+1.1
3,191,717	-		Sama_2665	0.51	-1.2
3,191,720	+		Sama_2665	0.51	-3.3
3,191,720	+		Sama_2665	0.51	+0.7
3,191,720	+		Sama_2665	0.51	-0.9
3,191,720	+		Sama_2665	0.51	-0.5
3,191,720	+		Sama_2665	0.51	+0.4
3,191,720	+		Sama_2665	0.51	-1.1
3,191,720	+		Sama_2665	0.51	-0.5
3,191,721	-		Sama_2665	0.51	-0.6
3,191,721	-		Sama_2665	0.51	+0.5
3,191,721	-		Sama_2665	0.51	-0.5
3,191,721	-		Sama_2665	0.51	-1.5
3,191,721	-		Sama_2665	0.51	-3.1
3,191,721	-		Sama_2665	0.51	-0.7
3,191,721	-		Sama_2665	0.51	-1.4
3,191,721	-		Sama_2665	0.51	-1.4
3,191,721	-		Sama_2665	0.51	+1.4
3,191,723	+		Sama_2665	0.52	+0.2
3,191,723	+		Sama_2665	0.52	-2.1
3,191,724	-		Sama_2665	0.52	-1.0
3,191,726	+		Sama_2665	0.52	+1.5
3,191,726	+		Sama_2665	0.52	-0.9
3,191,727	-		Sama_2665	0.52	-1.5
3,191,727	-		Sama_2665	0.52	+0.1
3,191,727	-		Sama_2665	0.52	-2.4
3,191,727	-		Sama_2665	0.52	+0.7
3,191,727	-		Sama_2665	0.52	+0.6
3,191,733	-		Sama_2665	0.53	-0.3
3,191,816	+		Sama_2665	0.62	+0.6
3,191,816	+		Sama_2665	0.62	-1.6
3,191,816	+		Sama_2665	0.62	+1.2
3,191,817	-		Sama_2665	0.62	-0.4
3,191,817	-		Sama_2665	0.62	-0.5
3,191,817	-		Sama_2665	0.62	+0.5
3,191,817	-		Sama_2665	0.62	-0.9
3,191,817	-		Sama_2665	0.62	-1.3
3,191,888	+		Sama_2665	0.70	-1.3
3,191,888	+		Sama_2665	0.70	-2.4
3,191,888	+		Sama_2665	0.70	-1.6
3,191,888	+		Sama_2665	0.70	+1.1
3,191,888	+		Sama_2665	0.70	+1.4
3,191,888	+		Sama_2665	0.70	+1.9
3,191,888	+		Sama_2665	0.70	-1.7
3,191,888	+		Sama_2665	0.70	-0.9
3,191,888	+		Sama_2665	0.70	-0.2
3,191,888	+		Sama_2665	0.70	+0.6
3,191,888	+		Sama_2665	0.70	+0.1
3,191,888	+		Sama_2665	0.70	-1.3
3,191,888	+		Sama_2665	0.70	-2.3
3,191,889	-		Sama_2665	0.70	+1.2
3,191,889	-		Sama_2665	0.70	-1.1
3,191,889	-		Sama_2665	0.70	+0.7
3,191,889	-		Sama_2665	0.70	-2.4
3,191,889	-		Sama_2665	0.70	-1.4
3,191,889	-		Sama_2665	0.70	-0.4
3,191,889	-		Sama_2665	0.70	+1.8
3,191,889	-		Sama_2665	0.70	+0.4
3,191,889	-		Sama_2665	0.70	-1.1
3,191,889	-		Sama_2665	0.70	-1.3
3,191,889	-		Sama_2665	0.70	-0.3
3,191,889	-		Sama_2665	0.70	-1.7
3,191,889	-		Sama_2665	0.70	-0.9
3,191,889	-		Sama_2665	0.70	-0.2
3,191,889	-		Sama_2665	0.70	+0.1
3,191,906	-		Sama_2665	0.72	-3.6
3,191,952	+		Sama_2665	0.77	-0.8
3,191,952	+		Sama_2665	0.77	-2.5
3,191,952	+		Sama_2665	0.77	-2.3
3,191,952	+		Sama_2665	0.77	+0.3
3,191,952	+		Sama_2665	0.77	-0.5
3,191,952	+		Sama_2665	0.77	+0.3
3,191,953	-		Sama_2665	0.77	+0.5
3,191,953	+		Sama_2665	0.77	+0.1
3,191,953	-		Sama_2665	0.77	-0.5
3,191,953	-		Sama_2665	0.77	-1.7
3,191,953	-		Sama_2665	0.77	+0.3
3,191,953	-		Sama_2665	0.77	+0.9
3,191,953	-		Sama_2665	0.77	-1.5
3,191,956	+		Sama_2665	0.78	+0.7
3,191,956	+		Sama_2665	0.78	-2.8
3,191,956	+		Sama_2665	0.78	-0.3
3,191,956	+		Sama_2665	0.78	-0.5
3,191,956	+		Sama_2665	0.78	+0.1
3,191,956	+		Sama_2665	0.78	-0.3
3,191,956	+		Sama_2665	0.78	-2.5
3,191,957	-		Sama_2665	0.78	-1.5
3,191,957	-		Sama_2665	0.78	-2.5
3,192,017	-		Sama_2665	0.84	-2.0
3,192,017	-		Sama_2665	0.84	-0.7
3,192,019	+		Sama_2665	0.84	-0.7
3,192,019	+		Sama_2665	0.84	+0.9
3,192,019	+		Sama_2665	0.84	+1.1
3,192,019	+		Sama_2665	0.84	-1.9
3,192,019	+		Sama_2665	0.84	-1.7
3,192,020	-		Sama_2665	0.85	+0.1
3,192,051	-		Sama_2665	0.88	+1.3
3,192,051	-		Sama_2665	0.88	-0.9
3,192,053	-		Sama_2665	0.88	+1.8
3,192,083	+				+0.2
3,192,083	+				-1.5
3,192,083	+				-0.7
3,192,083	+				-0.9
3,192,083	+				-0.1
3,192,083	+				+1.1
3,192,084	-				-0.2
3,192,084	-				-0.6
3,192,084	-				-1.3
3,192,084	-				-0.1
3,192,103	+				+0.2
3,192,119	+				+0.9
3,192,120	-				+0.8
3,192,120	-				-0.3
3,192,156	+				-1.7
3,192,157	-				-0.3
3,192,157	-				-2.1
3,192,157	-				+1.6
3,192,236	-				+0.2
3,192,273	-				+0.4
3,192,276	+				-0.5
3,192,276	+				+1.1
3,192,276	+				-0.3
3,192,277	-				-1.3
3,192,277	-				-0.3
3,192,277	-				-0.7
3,192,277	-				-0.5
3,192,298	-				+0.6
3,192,298	-				-1.3
3,192,336	+		Sama_2666	0.10	-0.0
3,192,337	-		Sama_2666	0.10	-0.3
3,192,337	-		Sama_2666	0.10	+0.5
3,192,337	-		Sama_2666	0.10	+0.5
3,192,361	+		Sama_2666	0.12	+0.2
3,192,361	+		Sama_2666	0.12	-1.5
3,192,361	+		Sama_2666	0.12	+2.2
3,192,362	-		Sama_2666	0.12	+0.2
3,192,362	-		Sama_2666	0.12	-1.7
3,192,362	-		Sama_2666	0.12	+2.8
3,192,362	-		Sama_2666	0.12	+0.5
3,192,463	+		Sama_2666	0.18	+0.8
3,192,463	+		Sama_2666	0.18	-0.3
3,192,463	+		Sama_2666	0.18	-2.2
3,192,464	-		Sama_2666	0.18	-0.6
3,192,464	-		Sama_2666	0.18	-0.3
3,192,574	+		Sama_2666	0.24	+0.8
3,192,574	+		Sama_2666	0.24	+0.6
3,192,574	+		Sama_2666	0.24	+0.5
3,192,574	+		Sama_2666	0.24	+1.4
3,192,574	+		Sama_2666	0.24	-0.4
3,192,575	-		Sama_2666	0.24	+0.4
3,192,575	-		Sama_2666	0.24	+0.5
3,192,575	-		Sama_2666	0.24	-1.3
3,192,592	-		Sama_2666	0.25	+0.8
3,192,601	-		Sama_2666	0.26	+0.3
3,192,616	+		Sama_2666	0.26	+0.6
3,192,616	+		Sama_2666	0.26	-0.7
3,192,616	+		Sama_2666	0.26	-1.1
3,192,616	+		Sama_2666	0.26	+1.5
3,192,617	-		Sama_2666	0.27	-1.1
3,192,617	-		Sama_2666	0.27	-1.7
3,192,617	-		Sama_2666	0.27	-1.7
3,192,617	-		Sama_2666	0.27	-0.1
3,192,628	+		Sama_2666	0.27	+1.8
3,192,628	+		Sama_2666	0.27	-2.7
3,192,650	+		Sama_2666	0.28	-0.3
3,192,650	+		Sama_2666	0.28	+1.2
3,192,650	+		Sama_2666	0.28	-1.9
3,192,650	+		Sama_2666	0.28	-0.1
3,192,651	-		Sama_2666	0.28	+1.6
3,192,651	-		Sama_2666	0.28	-0.6
3,192,651	-		Sama_2666	0.28	+3.1
3,192,651	-		Sama_2666	0.28	-0.2
3,192,712	-		Sama_2666	0.32	+1.9
3,192,712	-		Sama_2666	0.32	-3.4
3,192,712	-		Sama_2666	0.32	-0.3
3,192,723	+		Sama_2666	0.33	-1.9
3,192,724	-		Sama_2666	0.33	-0.5
3,192,749	+		Sama_2666	0.34	-3.4
3,192,750	-		Sama_2666	0.34	-1.9
3,192,779	+		Sama_2666	0.36	-1.9
3,192,780	-		Sama_2666	0.36	+0.7
3,192,869	+		Sama_2666	0.41	-2.6
3,192,869	+		Sama_2666	0.41	+0.6
3,192,870	-		Sama_2666	0.41	+1.8
3,192,926	+		Sama_2666	0.45	+1.4
3,192,927	-		Sama_2666	0.45	+1.0
3,192,927	-		Sama_2666	0.45	-3.5
3,192,927	-		Sama_2666	0.45	+0.7
3,192,956	+		Sama_2666	0.46	-1.5
3,192,967	-		Sama_2666	0.47	-0.2
3,192,979	+		Sama_2666	0.48	-1.4
3,192,984	+		Sama_2666	0.48	-0.5
3,193,015	+		Sama_2666	0.50	-0.2
3,193,016	-		Sama_2666	0.50	-0.2
3,193,016	-		Sama_2666	0.50	-0.2
3,193,053	+		Sama_2666	0.52	-0.6
3,193,053	+		Sama_2666	0.52	+0.3
3,193,054	-		Sama_2666	0.52	-0.4
3,193,054	-		Sama_2666	0.52	-1.6
3,193,054	-		Sama_2666	0.52	+0.6
3,193,054	-		Sama_2666	0.52	+4.1
3,193,054	-		Sama_2666	0.52	+0.8
3,193,105	+		Sama_2666	0.55	-0.3
3,193,105	+		Sama_2666	0.55	+0.1
3,193,105	+		Sama_2666	0.55	-1.0
3,193,105	+		Sama_2666	0.55	-0.4
3,193,105	+		Sama_2666	0.55	-2.3
3,193,105	+		Sama_2666	0.55	+3.7
3,193,105	+		Sama_2666	0.55	-2.0
3,193,105	+		Sama_2666	0.55	-1.3
3,193,105	+		Sama_2666	0.55	-2.3
3,193,105	+		Sama_2666	0.55	-0.9
3,193,105	+		Sama_2666	0.55	-0.7
3,193,105	+		Sama_2666	0.55	-0.8
3,193,106	-		Sama_2666	0.55	-2.5
3,193,106	-		Sama_2666	0.55	-0.7
3,193,106	-		Sama_2666	0.55	-3.2
3,193,106	-		Sama_2666	0.55	-2.0
3,193,106	-		Sama_2666	0.55	-1.7
3,193,106	-		Sama_2666	0.55	+1.8
3,193,106	-		Sama_2666	0.55	+1.0
3,193,106	-		Sama_2666	0.55	-1.5
3,193,106	-		Sama_2666	0.55	-2.4
3,193,106	-		Sama_2666	0.55	-1.6
3,193,106	-		Sama_2666	0.55	-0.2
3,193,106	-		Sama_2666	0.55	+0.5
3,193,107	+		Sama_2666	0.55	+0.3
3,193,107	+		Sama_2666	0.55	-0.5
3,193,107	+		Sama_2666	0.55	+0.5
3,193,107	+		Sama_2666	0.55	+0.6
3,193,107	+		Sama_2666	0.55	+1.3
3,193,107	+		Sama_2666	0.55	-1.5
3,193,107	+		Sama_2666	0.55	+2.8
3,193,107	+		Sama_2666	0.55	-1.2
3,193,107	+		Sama_2666	0.55	-0.9
3,193,108	-		Sama_2666	0.55	+0.6
3,193,108	-		Sama_2666	0.55	+0.4
3,193,108	-		Sama_2666	0.55	+1.1
3,193,108	-		Sama_2666	0.55	+0.4
3,193,108	-		Sama_2666	0.55	+0.3
3,193,108	-		Sama_2666	0.55	+1.2
3,193,108	-		Sama_2666	0.55	+1.4
3,193,108	-		Sama_2666	0.55	-2.3
3,193,162	+		Sama_2666	0.58	-2.1
3,193,162	+		Sama_2666	0.58	-3.0
3,193,162	+		Sama_2666	0.58	-0.4
3,193,163	-		Sama_2666	0.58	-0.5
3,193,163	-		Sama_2666	0.58	+0.4
3,193,163	-		Sama_2666	0.58	-0.9
3,193,163	-		Sama_2666	0.58	-0.9
3,193,163	-		Sama_2666	0.58	+1.6
3,193,163	-		Sama_2666	0.58	-0.5
3,193,163	-		Sama_2666	0.58	+0.8
3,193,163	-		Sama_2666	0.58	+1.0
3,193,287	-		Sama_2666	0.66	+0.3
3,193,287	-		Sama_2666	0.66	+0.9
3,193,384	+		Sama_2666	0.71	+0.2
3,193,470	+		Sama_2666	0.76	+3.6
3,193,495	+		Sama_2666	0.78	-0.7
3,193,496	-		Sama_2666	0.78	+0.4
3,193,496	-		Sama_2666	0.78	-0.6
3,193,538	+		Sama_2666	0.80	+0.8
3,193,539	-		Sama_2666	0.80	-1.1
3,193,539	-		Sama_2666	0.80	+1.2
3,193,539	-		Sama_2666	0.80	-0.4
3,193,539	-		Sama_2666	0.80	-2.5
3,193,741	+				+1.4
3,193,741	+				+0.8
3,193,741	+				+0.2
3,193,741	+				-1.6
3,193,741	+				-0.9
3,193,741	+				-0.9
3,193,741	+				+0.5
3,193,741	+				+0.4
3,193,742	-				-0.1
3,193,742	-				-0.4
3,193,742	-				+0.3
3,193,742	-				-0.3
3,193,742	-				-1.9
3,193,742	-				-0.5
3,193,742	-				+0.3
3,193,742	-				+1.1
3,193,742	-				-1.3
3,193,742	-				-0.4
3,193,742	-				+1.1
3,193,742	-				-0.1
3,193,824	+				-0.8
3,193,824	+				-2.3
3,193,825	-				+1.4
3,193,825	-				+0.1
3,193,825	-				-1.0
3,193,825	-				+1.1
3,193,825	-				-0.1
3,193,825	-				-1.6
3,193,825	-				+0.6
3,193,825	-				-1.6
3,193,825	-				-0.2
3,193,825	-				+0.3
3,193,826	-				-0.4
3,193,830	+				-3.0
3,193,830	+				-0.9
3,193,919	-				-1.5
3,193,961	+				+0.6
3,193,962	-				+1.4
3,193,974	+				-1.3
3,193,974	+				-1.5
3,193,975	-				+1.4
3,193,975	-				-0.6
3,193,993	-				+0.1
3,193,993	-				-2.9
3,193,993	-				+1.6
3,194,013	+				+0.8
3,194,013	+				-2.1
3,194,013	+				+1.3
3,194,013	+				+0.7
3,194,013	+				+0.4
3,194,013	+				+0.3
3,194,013	+				-3.2
3,194,013	+				+0.2
3,194,013	+				-2.5
3,194,013	+				+0.6
3,194,013	+				-1.5
3,194,014	-				-3.6
3,194,014	-				-1.1
3,194,014	-				-0.1
3,194,014	-				-0.9
3,194,014	-				-1.5
3,194,014	-				-2.9
3,194,014	-				-0.9
3,194,043	+				-2.3
3,194,044	-				-1.3
3,194,044	-				-0.5
3,194,114	+		Sama_2667	0.24	-0.5
3,194,115	-		Sama_2667	0.24	-0.9
3,194,115	-		Sama_2667	0.24	-0.5
3,194,127	+		Sama_2667	0.27	+0.6
3,194,128	-		Sama_2667	0.28	-1.4
3,194,187	+		Sama_2667	0.42	-1.9
3,194,187	+		Sama_2667	0.42	+0.6
3,194,194	+		Sama_2667	0.43	+0.5
3,194,194	+		Sama_2667	0.43	-0.1
3,194,195	-		Sama_2667	0.44	+1.5
3,194,195	-		Sama_2667	0.44	+0.7
3,194,308	+		Sama_2667	0.71	-2.3
3,194,308	+		Sama_2667	0.71	-1.3
3,194,308	+		Sama_2667	0.71	-0.5
3,194,308	+		Sama_2667	0.71	+0.6
3,194,308	+		Sama_2667	0.71	+1.3
3,194,308	+		Sama_2667	0.71	+0.1
3,194,308	+		Sama_2667	0.71	+1.0
3,194,308	+		Sama_2667	0.71	+0.1
3,194,309	-		Sama_2667	0.71	-1.7
3,194,317	+		Sama_2667	0.73	-0.2
3,194,317	+		Sama_2667	0.73	+0.1
3,194,317	+		Sama_2667	0.73	-2.4
3,194,318	-		Sama_2667	0.73	-0.5
3,194,318	-		Sama_2667	0.73	-0.1
3,194,318	-		Sama_2667	0.73	+0.2
3,194,318	-		Sama_2667	0.73	-2.1
3,194,318	-		Sama_2667	0.73	-2.5
3,194,398	-				+2.2
3,194,398	-				-0.5
3,194,416	+				+0.2
3,194,417	-				+0.9
3,194,425	+				-2.4
3,194,425	+				-1.8
3,194,425	+				+0.4
3,194,491	+				-0.5
3,194,594	+		Sama_2668	0.22	-1.7