Strain Fitness in Shewanella amazonensis SB2B around Sama_2641

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,162,941	+				-2.1
3,162,941	+				-3.0
3,162,941	+				+0.5
3,162,941	+				-2.9
3,163,024	+				-3.8
3,163,025	-				-1.5
3,163,025	-				-3.0
3,163,041	-				-2.0
3,163,049	+				-3.9
3,163,133	+		Sama_2640	0.15	-2.3
3,163,133	+		Sama_2640	0.15	-0.4
3,163,133	+		Sama_2640	0.15	-2.0
3,163,133	+		Sama_2640	0.15	-2.8
3,163,133	+		Sama_2640	0.15	-2.0
3,163,133	+		Sama_2640	0.15	-2.8
3,163,133	+		Sama_2640	0.15	-3.4
3,163,134	-		Sama_2640	0.15	-2.7
3,163,134	-		Sama_2640	0.15	-2.7
3,163,134	-		Sama_2640	0.15	-1.3
3,163,134	-		Sama_2640	0.15	-1.3
3,163,134	-		Sama_2640	0.15	-0.1
3,163,134	-		Sama_2640	0.15	-0.8
3,163,134	-		Sama_2640	0.15	-1.0
3,163,134	-		Sama_2640	0.15	+0.0
3,163,137	+		Sama_2640	0.16	+0.6
3,163,137	+		Sama_2640	0.16	-3.7
3,163,137	+		Sama_2640	0.16	-0.5
3,163,137	+		Sama_2640	0.16	-0.5
3,163,137	+		Sama_2640	0.16	-2.9
3,163,138	-		Sama_2640	0.16	-2.1
3,163,138	-		Sama_2640	0.16	-3.6
3,163,138	-		Sama_2640	0.16	-2.3
3,163,176	-		Sama_2640	0.20	-1.5
3,163,200	-		Sama_2640	0.23	-1.0
3,163,203	+		Sama_2640	0.23	-2.3
3,163,204	-		Sama_2640	0.23	-1.0
3,163,204	-		Sama_2640	0.23	-2.8
3,163,204	-		Sama_2640	0.23	-3.0
3,163,254	-		Sama_2640	0.29	-2.0
3,163,265	+		Sama_2640	0.30	-3.0
3,163,266	-		Sama_2640	0.30	-1.4
3,163,266	-		Sama_2640	0.30	-0.5
3,163,271	+		Sama_2640	0.30	-2.8
3,163,272	-		Sama_2640	0.31	-1.1
3,163,352	+		Sama_2640	0.39	-0.7
3,163,352	+		Sama_2640	0.39	-2.9
3,163,353	-		Sama_2640	0.39	-2.4
3,163,363	+		Sama_2640	0.41	-2.3
3,163,364	-		Sama_2640	0.41	-1.0
3,163,369	+		Sama_2640	0.41	-0.4
3,163,369	+		Sama_2640	0.41	-0.1
3,163,369	+		Sama_2640	0.41	-2.4
3,163,370	-		Sama_2640	0.41	-2.1
3,163,370	-		Sama_2640	0.41	-2.7
3,163,370	-		Sama_2640	0.41	-1.0
3,163,383	-		Sama_2640	0.43	-0.0
3,163,383	-		Sama_2640	0.43	-2.1
3,163,385	-		Sama_2640	0.43	-3.1
3,163,385	-		Sama_2640	0.43	+0.9
3,163,385	-		Sama_2640	0.43	-0.0
3,163,385	-		Sama_2640	0.43	-0.3
3,163,385	-		Sama_2640	0.43	-2.1
3,163,395	-		Sama_2640	0.44	-0.7
3,163,395	-		Sama_2640	0.44	-2.4
3,163,407	+		Sama_2640	0.45	+0.0
3,163,407	+		Sama_2640	0.45	-4.9
3,163,408	-		Sama_2640	0.46	-1.5
3,163,428	-		Sama_2640	0.48	-3.1
3,163,428	-		Sama_2640	0.48	-1.0
3,163,493	-		Sama_2640	0.55	-1.5
3,163,493	-		Sama_2640	0.55	-2.5
3,163,493	-		Sama_2640	0.55	-2.3
3,163,529	+		Sama_2640	0.59	-2.1
3,163,529	+		Sama_2640	0.59	-2.1
3,163,530	-		Sama_2640	0.59	-3.6
3,163,582	+		Sama_2640	0.65	-1.3
3,163,589	+		Sama_2640	0.65	+1.0
3,163,589	+		Sama_2640	0.65	-0.7
3,163,590	-		Sama_2640	0.65	-2.3
3,163,590	-		Sama_2640	0.65	-4.1
3,163,632	+		Sama_2640	0.70	-1.5
3,163,633	-		Sama_2640	0.70	-2.9
3,163,633	-		Sama_2640	0.70	-2.0
3,163,633	-		Sama_2640	0.70	-1.3
3,163,652	-		Sama_2640	0.72	-1.3
3,163,652	-		Sama_2640	0.72	-2.1
3,163,660	+		Sama_2640	0.73	-3.0
3,163,661	-		Sama_2640	0.73	-0.2
3,163,661	-		Sama_2640	0.73	+0.3
3,163,663	+		Sama_2640	0.73	-3.9
3,163,664	-		Sama_2640	0.74	-2.8
3,163,690	+		Sama_2640	0.76	-4.0
3,163,690	+		Sama_2640	0.76	-0.7
3,163,690	+		Sama_2640	0.76	-2.3
3,163,691	-		Sama_2640	0.77	-3.4
3,163,732	+		Sama_2640	0.81	-4.1
3,163,750	+		Sama_2640	0.83	-1.1
3,163,751	-		Sama_2640	0.83	-1.0
3,163,853	+				+2.0
3,163,913	+				-3.5
3,163,913	+				+0.0
3,163,914	-				-0.6
3,163,944	+				+0.0
3,163,944	+				-2.3
3,163,944	+				+0.2
3,163,944	+				-2.1
3,163,944	+				-3.0
3,163,945	-				-1.3
3,163,945	-				-0.8
3,163,945	-				+1.0
3,164,034	+		Sama_2641	0.12	+0.5
3,164,034	+		Sama_2641	0.12	-1.8
3,164,034	+		Sama_2641	0.12	-0.8
3,164,035	-		Sama_2641	0.12	-1.5
3,164,035	-		Sama_2641	0.12	-1.2
3,164,035	-		Sama_2641	0.12	-3.1
3,164,035	-		Sama_2641	0.12	-2.3
3,164,035	-		Sama_2641	0.12	+1.5
3,164,037	+		Sama_2641	0.12	-0.1
3,164,037	+		Sama_2641	0.12	-2.2
3,164,037	+		Sama_2641	0.12	-2.0
3,164,038	-		Sama_2641	0.12	-2.0
3,164,058	+		Sama_2641	0.14	-1.0
3,164,059	-		Sama_2641	0.14	-2.0
3,164,072	+		Sama_2641	0.15	-1.0
3,164,072	+		Sama_2641	0.15	-1.9
3,164,072	+		Sama_2641	0.15	-2.8
3,164,073	-		Sama_2641	0.15	-1.8
3,164,073	-		Sama_2641	0.15	-0.2
3,164,073	-		Sama_2641	0.15	-0.5
3,164,073	-		Sama_2641	0.15	-0.8
3,164,073	-		Sama_2641	0.15	-1.5
3,164,073	-		Sama_2641	0.15	-3.5
3,164,073	-		Sama_2641	0.15	-1.6
3,164,095	-		Sama_2641	0.17	-1.8
3,164,095	-		Sama_2641	0.17	-1.6
3,164,120	-		Sama_2641	0.19	-2.2
3,164,180	+		Sama_2641	0.25	-3.6
3,164,180	+		Sama_2641	0.25	-1.0
3,164,181	-		Sama_2641	0.25	-1.0
3,164,281	+		Sama_2641	0.33	-2.0
3,164,302	+		Sama_2641	0.35	-1.7
3,164,303	-		Sama_2641	0.35	-0.3
3,164,322	+		Sama_2641	0.37	-2.6
3,164,322	+		Sama_2641	0.37	-0.5
3,164,322	+		Sama_2641	0.37	-3.8
3,164,322	+		Sama_2641	0.37	-1.3
3,164,323	-		Sama_2641	0.37	-1.8
3,164,323	-		Sama_2641	0.37	-2.0
3,164,368	+		Sama_2641	0.41	-1.0
3,164,368	+		Sama_2641	0.41	-1.3
3,164,600	-		Sama_2641	0.61	-3.2
3,164,600	-		Sama_2641	0.61	-1.8
3,164,611	-		Sama_2641	0.62	-0.4
3,164,719	+		Sama_2641	0.72	-2.4
3,164,719	+		Sama_2641	0.72	-1.5
3,164,737	-		Sama_2641	0.74	+0.2
3,164,737	-		Sama_2641	0.74	+0.5
3,164,752	+		Sama_2641	0.75	-1.8
3,164,752	+		Sama_2641	0.75	-2.1
3,164,752	+		Sama_2641	0.75	-2.5
3,164,753	-		Sama_2641	0.75	+0.7
3,164,753	-		Sama_2641	0.75	-3.5
3,164,753	-		Sama_2641	0.75	-2.5
3,164,753	-		Sama_2641	0.75	+1.0
3,164,753	-		Sama_2641	0.75	-3.4
3,164,753	-		Sama_2641	0.75	-0.4
3,164,770	-		Sama_2641	0.76	-2.5
3,164,785	+		Sama_2641	0.78	-0.5
3,164,786	-		Sama_2641	0.78	-3.0
3,164,806	-		Sama_2641	0.80	-2.5
3,164,809	+		Sama_2641	0.80	-0.5
3,164,809	+		Sama_2641	0.80	-3.5
3,164,809	+		Sama_2641	0.80	-2.4
3,164,809	+		Sama_2641	0.80	-3.5
3,164,810	-		Sama_2641	0.80	-2.4
3,164,810	-		Sama_2641	0.80	-1.8
3,164,810	-		Sama_2641	0.80	+0.0
3,164,849	+		Sama_2641	0.83	-0.8
3,164,849	+		Sama_2641	0.83	+1.8
3,164,849	+		Sama_2641	0.83	-0.3
3,164,850	-		Sama_2641	0.83	-3.7
3,164,858	-		Sama_2641	0.84	-1.0
3,164,981	+				-3.0
3,164,981	+				-2.0
3,164,982	-				-0.7
3,164,982	-				+0.1
3,165,011	-				-0.8
3,165,031	+				+0.0
3,165,031	+				-1.8
3,165,031	+				-4.2
3,165,032	-				-0.5
3,165,038	-				-3.0
3,165,038	-				+1.0
3,165,038	-				+0.2
3,165,038	-				-3.0
3,165,038	-				-2.3
3,165,041	+				-3.8
3,165,041	+				-1.5
3,165,041	+				-0.7
3,165,041	+				-2.0
3,165,042	-				+0.0
3,165,042	-				-1.3
3,165,042	-				-1.0
3,165,042	-				-1.3
3,165,042	-				-2.0
3,165,097	+				-1.5
3,165,097	+				+1.6
3,165,110	+				-2.3
3,165,110	+				-0.1
3,165,110	+				-2.5
3,165,111	-				+0.8
3,165,111	-				-0.2
3,165,111	-				+0.4
3,165,111	-				+0.2
3,165,149	-				+1.0
3,165,211	+				-3.0
3,165,211	+				-2.7
3,165,211	+				-0.8
3,165,261	+				-2.4
3,165,261	+				-3.1
3,165,304	+		Sama_2642	0.14	-2.1
3,165,304	+		Sama_2642	0.14	-0.7
3,165,305	-		Sama_2642	0.14	-0.9
3,165,327	+		Sama_2642	0.16	-2.0
3,165,327	+		Sama_2642	0.16	-1.5
3,165,328	-		Sama_2642	0.16	-1.0
3,165,328	-		Sama_2642	0.16	-1.3
3,165,328	-		Sama_2642	0.16	-1.5
3,165,328	-		Sama_2642	0.16	-0.5
3,165,328	-		Sama_2642	0.16	-1.7
3,165,328	-		Sama_2642	0.16	-2.0
3,165,336	+		Sama_2642	0.16	-1.4
3,165,336	+		Sama_2642	0.16	+0.2
3,165,336	+		Sama_2642	0.16	-2.9
3,165,336	+		Sama_2642	0.16	-3.9
3,165,336	+		Sama_2642	0.16	-3.5
3,165,336	+		Sama_2642	0.16	-2.3
3,165,336	+		Sama_2642	0.16	-1.5
3,165,336	+		Sama_2642	0.16	-1.3
3,165,336	+		Sama_2642	0.16	+0.2
3,165,336	+		Sama_2642	0.16	+0.0
3,165,337	-		Sama_2642	0.17	-1.5
3,165,337	-		Sama_2642	0.17	-1.3
3,165,337	-		Sama_2642	0.17	-2.8
3,165,337	-		Sama_2642	0.17	-2.1
3,165,337	-		Sama_2642	0.17	-1.0
3,165,337	-		Sama_2642	0.17	-0.5
3,165,337	-		Sama_2642	0.17	-3.5
3,165,337	-		Sama_2642	0.17	-1.7
3,165,337	-		Sama_2642	0.17	-1.8
3,165,340	+		Sama_2642	0.17	-0.5
3,165,340	+		Sama_2642	0.17	-0.5
3,165,340	+		Sama_2642	0.17	-1.1
3,165,341	-		Sama_2642	0.17	+2.0
3,165,341	-		Sama_2642	0.17	-3.3
3,165,382	+		Sama_2642	0.21	-0.2
3,165,383	-		Sama_2642	0.21	-2.5
3,165,460	+		Sama_2642	0.28	-0.1
3,165,471	+		Sama_2642	0.29	-3.7
3,165,524	+		Sama_2642	0.34	-1.5
3,165,525	-		Sama_2642	0.34	+3.4
3,165,525	-		Sama_2642	0.34	-2.0
3,165,582	+		Sama_2642	0.39	-1.5
3,165,582	+		Sama_2642	0.39	+2.0
3,165,582	+		Sama_2642	0.39	-1.5
3,165,582	+		Sama_2642	0.39	+0.2
3,165,582	+		Sama_2642	0.39	-1.0
3,165,582	+		Sama_2642	0.39	-0.8
3,165,582	+		Sama_2642	0.39	-1.8
3,165,583	-		Sama_2642	0.39	-0.3
3,165,583	-		Sama_2642	0.39	-1.0
3,165,600	+		Sama_2642	0.40	-2.4
3,165,601	-		Sama_2642	0.41	-0.4
3,165,609	+		Sama_2642	0.41	-3.1
3,165,609	+		Sama_2642	0.41	-1.5
3,165,609	+		Sama_2642	0.41	-2.8
3,165,610	-		Sama_2642	0.41	+0.0
3,165,610	-		Sama_2642	0.41	-1.7
3,165,610	-		Sama_2642	0.41	-3.0
3,165,610	-		Sama_2642	0.41	-2.7
3,165,630	-		Sama_2642	0.43	-3.8
3,165,630	-		Sama_2642	0.43	-1.0
3,165,670	+		Sama_2642	0.47	+0.3
3,165,687	+		Sama_2642	0.48	-3.3
3,165,687	+		Sama_2642	0.48	-1.0
3,165,687	+		Sama_2642	0.48	-1.9
3,165,688	-		Sama_2642	0.48	-1.6
3,165,688	-		Sama_2642	0.48	-3.2
3,165,688	-		Sama_2642	0.48	-0.3
3,165,824	+		Sama_2642	0.61	-0.1
3,165,824	+		Sama_2642	0.61	-3.8
3,165,825	-		Sama_2642	0.61	+0.5
3,165,867	+		Sama_2642	0.65	-1.8
3,165,868	-		Sama_2642	0.65	-3.8
3,165,868	-		Sama_2642	0.65	-0.1
3,165,868	-		Sama_2642	0.65	-1.1
3,165,971	-		Sama_2642	0.74	-3.8