Strain Fitness in Shewanella amazonensis SB2B around Sama_2213

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
2,674,125	+		Sama_2212	0.46	-1.4
2,674,125	+		Sama_2212	0.46	-1.2
2,674,174	+		Sama_2212	0.48	-0.7
2,674,175	-		Sama_2212	0.49	-2.9
2,674,197	+		Sama_2212	0.50	-1.8
2,674,197	+		Sama_2212	0.50	-1.1
2,674,197	+		Sama_2212	0.50	-4.1
2,674,198	-		Sama_2212	0.50	-2.1
2,674,198	-		Sama_2212	0.50	-2.2
2,674,198	-		Sama_2212	0.50	-3.1
2,674,199	+		Sama_2212	0.50	-1.2
2,674,199	+		Sama_2212	0.50	-1.1
2,674,199	+		Sama_2212	0.50	-1.7
2,674,199	+		Sama_2212	0.50	-3.2
2,674,199	+		Sama_2212	0.50	+0.7
2,674,199	+		Sama_2212	0.50	-2.8
2,674,200	-		Sama_2212	0.50	-2.9
2,674,200	-		Sama_2212	0.50	-1.7
2,674,200	-		Sama_2212	0.50	-2.1
2,674,200	-		Sama_2212	0.50	-3.3
2,674,239	+		Sama_2212	0.52	-4.2
2,674,239	+		Sama_2212	0.52	-0.7
2,674,240	-		Sama_2212	0.52	-1.4
2,674,240	-		Sama_2212	0.52	-1.7
2,674,259	+		Sama_2212	0.53	-4.3
2,674,260	-		Sama_2212	0.53	-2.8
2,674,397	+		Sama_2212	0.61	-3.1
2,674,414	+		Sama_2212	0.62	-1.1
2,674,485	+		Sama_2212	0.66	-2.8
2,674,486	-		Sama_2212	0.66	+0.3
2,674,486	-		Sama_2212	0.66	-3.6
2,674,486	-		Sama_2212	0.66	-2.5
2,674,486	-		Sama_2212	0.66	-2.9
2,674,486	-		Sama_2212	0.66	-2.2
2,674,486	-		Sama_2212	0.66	-0.8
2,674,486	-		Sama_2212	0.66	-1.4
2,674,565	+		Sama_2212	0.70	-1.9
2,674,566	-		Sama_2212	0.70	-4.2
2,674,607	+		Sama_2212	0.72	-3.3
2,674,640	+		Sama_2212	0.74	+0.8
2,674,657	+		Sama_2212	0.75	-0.1
2,674,675	+		Sama_2212	0.76	-2.2
2,674,676	-		Sama_2212	0.76	-0.7
2,674,870	+		Sama_2212	0.87	-2.1
2,674,871	-		Sama_2212	0.87	-2.8
2,674,871	-		Sama_2212	0.87	-0.7
2,674,871	-		Sama_2212	0.87	-1.6
2,674,871	-		Sama_2212	0.87	-1.9
2,674,932	+				+1.9
2,674,933	-				-3.7
2,674,935	+				+0.3
2,674,935	+				-1.9
2,674,935	+				-2.9
2,674,935	+				-1.0
2,674,936	-				-2.7
2,674,936	-				-3.7
2,674,936	-				-2.7
2,674,936	-				-3.4
2,674,936	-				+0.1
2,674,936	-				-3.3
2,674,936	-				-1.1
2,674,936	-				-2.9
2,674,977	-				-2.1
2,674,988	+				-3.4
2,675,070	+				-0.7
2,675,071	-				-2.4
2,675,071	-				-1.7
2,675,071	-				-1.1
2,675,091	+				-2.5
2,675,091	+				+0.6
2,675,091	+				-1.7
2,675,091	+				-0.1
2,675,091	+				-2.9
2,675,091	+				-3.1
2,675,092	-				-1.2
2,675,092	-				-0.7
2,675,092	-				-3.5
2,675,092	-				-1.4
2,675,092	-				-2.4
2,675,092	-				-2.5
2,675,092	-				-1.1
2,675,092	-				-3.0
2,675,092	-				-2.4
2,675,128	-				-3.0
2,675,226	+				-1.7
2,675,227	-				-2.8
2,675,227	-				-2.5
2,675,256	-		Sama_2213	0.12	-3.5
2,675,322	-		Sama_2213	0.17	-2.2
2,675,322	-		Sama_2213	0.17	-2.5
2,675,322	-		Sama_2213	0.17	-1.9
2,675,402	-		Sama_2213	0.22	-2.2
2,675,436	+		Sama_2213	0.25	-2.8
2,675,436	+		Sama_2213	0.25	-3.7
2,675,436	+		Sama_2213	0.25	-2.5
2,675,436	+		Sama_2213	0.25	-2.2
2,675,436	+		Sama_2213	0.25	-5.1
2,675,436	+		Sama_2213	0.25	-2.7
2,675,437	-		Sama_2213	0.25	-0.7
2,675,437	-		Sama_2213	0.25	-1.4
2,675,437	-		Sama_2213	0.25	-1.4
2,675,437	-		Sama_2213	0.25	-1.1
2,675,562	-		Sama_2213	0.34	-2.8
2,675,586	+		Sama_2213	0.36	-1.4
2,675,586	+		Sama_2213	0.36	-1.4
2,675,586	+		Sama_2213	0.36	-2.1
2,675,586	+		Sama_2213	0.36	+1.5
2,675,587	-		Sama_2213	0.36	-3.1
2,675,587	-		Sama_2213	0.36	-2.4
2,675,641	-		Sama_2213	0.40	-4.3
2,675,928	+		Sama_2213	0.60	-3.5
2,675,928	+		Sama_2213	0.60	-3.5
2,675,928	+		Sama_2213	0.60	-3.2
2,675,928	+		Sama_2213	0.60	-2.2
2,675,929	-		Sama_2213	0.60	-0.1
2,675,929	-		Sama_2213	0.60	-2.4
2,675,929	-		Sama_2213	0.60	-1.4
2,676,011	+		Sama_2213	0.66	-1.7
2,676,011	+		Sama_2213	0.66	-2.7
2,676,012	-		Sama_2213	0.66	-1.7
2,676,017	-		Sama_2213	0.67	-2.8
2,676,042	+		Sama_2213	0.69	-2.5
2,676,042	+		Sama_2213	0.69	-3.0
2,676,072	+		Sama_2213	0.71	-3.9
2,676,132	+		Sama_2213	0.75	-2.7
2,676,133	-		Sama_2213	0.75	-3.1
2,676,133	-		Sama_2213	0.75	-2.4
2,676,133	-		Sama_2213	0.75	-3.3
2,676,133	-		Sama_2213	0.75	-3.2
2,676,220	+		Sama_2213	0.81	-1.1
2,676,221	-		Sama_2213	0.81	-1.9
2,676,221	-		Sama_2213	0.81	-1.4
2,676,221	-		Sama_2213	0.81	-0.8
2,676,221	-		Sama_2213	0.81	-3.1
2,676,221	-		Sama_2213	0.81	-1.8
2,676,363	+				-2.1
2,676,410	-				-1.3
2,676,449	-				-2.9
2,676,460	-				+0.9
2,676,475	+				+0.1
2,676,475	+				+0.2
2,676,475	+				-1.9
2,676,475	+				+0.5
2,676,476	-				-1.4
2,676,476	-				+0.0
2,676,521	-				-1.9
2,676,521	-				-2.4
2,676,533	+				-1.4
2,676,534	-				-3.1
2,676,534	-				-0.8
2,676,546	+				-3.3
2,676,618	+		Sama_2214	0.13	-0.7
2,676,619	-		Sama_2214	0.14	-1.9
2,676,621	+		Sama_2214	0.14	-2.7
2,676,622	-		Sama_2214	0.14	-1.8
2,676,622	-		Sama_2214	0.14	-0.2
2,676,622	-		Sama_2214	0.14	-0.4
2,676,622	-		Sama_2214	0.14	-0.4
2,676,622	-		Sama_2214	0.14	+0.2
2,676,633	+		Sama_2214	0.15	-1.0
2,676,633	+		Sama_2214	0.15	-2.1
2,676,634	-		Sama_2214	0.15	+0.3
2,676,688	+		Sama_2214	0.19	-2.2
2,676,688	+		Sama_2214	0.19	+1.3
2,676,689	-		Sama_2214	0.19	+0.1
2,676,758	-		Sama_2214	0.25	-1.7
2,676,760	+		Sama_2214	0.25	-2.7
2,676,773	+		Sama_2214	0.26	-2.4
2,676,773	+		Sama_2214	0.26	+1.2
2,676,773	+		Sama_2214	0.26	-1.9
2,676,773	+		Sama_2214	0.26	-0.1
2,676,827	+		Sama_2214	0.30	-2.7
2,676,864	-		Sama_2214	0.33	+0.0
2,676,864	-		Sama_2214	0.33	-2.5
2,676,864	-		Sama_2214	0.33	+0.6
2,676,880	-		Sama_2214	0.35	-2.1
2,676,949	+		Sama_2214	0.40	-2.2
2,676,999	+		Sama_2214	0.44	-1.4
2,677,022	-		Sama_2214	0.46	-0.5
2,677,025	+		Sama_2214	0.47	-3.2
2,677,025	+		Sama_2214	0.47	-0.1
2,677,026	-		Sama_2214	0.47	-0.3
2,677,026	-		Sama_2214	0.47	-1.2
2,677,026	-		Sama_2214	0.47	-3.6
2,677,026	-		Sama_2214	0.47	-2.5
2,677,136	+		Sama_2214	0.56	-2.4
2,677,136	+		Sama_2214	0.56	-1.7
2,677,136	+		Sama_2214	0.56	-1.9
2,677,136	+		Sama_2214	0.56	-3.7
2,677,137	-		Sama_2214	0.56	-1.7
2,677,137	-		Sama_2214	0.56	-1.9
2,677,247	-		Sama_2214	0.65	-2.1
2,677,260	+		Sama_2214	0.66	-0.1
2,677,277	+		Sama_2214	0.67	-3.3
2,677,277	+		Sama_2214	0.67	-1.1
2,677,343	+		Sama_2214	0.72	-0.7
2,677,343	+		Sama_2214	0.72	-2.7
2,677,344	-		Sama_2214	0.73	-0.7
2,677,344	-		Sama_2214	0.73	-2.8
2,677,344	-		Sama_2214	0.73	+2.2
2,677,344	-		Sama_2214	0.73	-0.1
2,677,344	-		Sama_2214	0.73	-2.2
2,677,344	-		Sama_2214	0.73	+1.3
2,677,346	+		Sama_2214	0.73	-1.7
2,677,365	-		Sama_2214	0.74	-1.4
2,677,365	-		Sama_2214	0.74	-1.9
2,677,438	+		Sama_2214	0.80	-1.9