Strain Fitness in Shewanella amazonensis SB2B around Sama_2212

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
2,672,317	+		Sama_2211	0.36	-1.4
2,672,317	+		Sama_2211	0.36	-0.7
2,672,317	+		Sama_2211	0.36	-3.2
2,672,317	+		Sama_2211	0.36	-1.1
2,672,317	+		Sama_2211	0.36	-1.7
2,672,317	+		Sama_2211	0.36	+0.3
2,672,317	+		Sama_2211	0.36	-2.0
2,672,317	+		Sama_2211	0.36	-1.4
2,672,317	+		Sama_2211	0.36	-0.7
2,672,318	-		Sama_2211	0.36	-3.3
2,672,318	-		Sama_2211	0.36	-3.5
2,672,318	-		Sama_2211	0.36	-2.4
2,672,318	-		Sama_2211	0.36	-3.2
2,672,318	-		Sama_2211	0.36	-2.8
2,672,318	-		Sama_2211	0.36	-0.1
2,672,318	-		Sama_2211	0.36	-1.4
2,672,318	-		Sama_2211	0.36	-2.8
2,672,318	-		Sama_2211	0.36	-3.5
2,672,318	-		Sama_2211	0.36	-1.1
2,672,318	-		Sama_2211	0.36	-3.5
2,672,323	+		Sama_2211	0.37	-3.0
2,672,323	+		Sama_2211	0.37	-2.1
2,672,378	+		Sama_2211	0.41	-2.8
2,672,378	+		Sama_2211	0.41	-2.4
2,672,379	-		Sama_2211	0.41	-1.7
2,672,379	-		Sama_2211	0.41	-2.8
2,672,379	-		Sama_2211	0.41	-2.7
2,672,550	-		Sama_2211	0.53	-3.3
2,672,550	-		Sama_2211	0.53	-1.4
2,672,556	-		Sama_2211	0.53	-1.9
2,672,556	-		Sama_2211	0.53	-0.3
2,672,586	+		Sama_2211	0.56	-2.4
2,672,587	-		Sama_2211	0.56	-2.8
2,672,632	-		Sama_2211	0.59	-2.5
2,672,632	-		Sama_2211	0.59	-2.0
2,672,748	+		Sama_2211	0.67	+0.7
2,672,748	+		Sama_2211	0.67	-2.8
2,672,748	+		Sama_2211	0.67	-1.1
2,672,748	+		Sama_2211	0.67	-2.4
2,672,749	-		Sama_2211	0.67	-2.2
2,672,749	-		Sama_2211	0.67	-3.9
2,672,752	+		Sama_2211	0.67	-1.1
2,672,752	+		Sama_2211	0.67	-2.7
2,672,753	-		Sama_2211	0.67	-2.4
2,672,863	+		Sama_2211	0.75	-1.1
2,672,900	-		Sama_2211	0.78	-3.8
2,672,924	-		Sama_2211	0.80	-2.4
2,672,924	-		Sama_2211	0.80	-3.2
2,672,924	-		Sama_2211	0.80	-0.1
2,673,016	+		Sama_2211	0.86	-0.1
2,673,017	-		Sama_2211	0.86	-3.2
2,673,017	-		Sama_2211	0.86	-1.4
2,673,136	-				-0.7
2,673,142	+				-3.4
2,673,142	+				+0.9
2,673,142	+				-3.1
2,673,143	-				-1.5
2,673,146	+				-1.4
2,673,146	+				-3.3
2,673,146	+				-0.5
2,673,146	+				-1.9
2,673,147	-				-1.1
2,673,147	-				-0.7
2,673,147	-				-1.9
2,673,147	-				-1.4
2,673,147	-				-2.4
2,673,147	-				-3.5
2,673,202	+				-0.8
2,673,203	-				+1.8
2,673,206	+				+0.2
2,673,207	-				+1.2
2,673,207	-				-1.4
2,673,253	-				-1.7
2,673,253	-				-3.3
2,673,266	-				-3.9
2,673,297	+				-1.1
2,673,297	+				-1.7
2,673,298	-				-2.4
2,673,337	-				-0.7
2,673,337	-				-2.5
2,673,355	+				-1.1
2,673,356	-				-2.1
2,673,373	+				-1.1
2,673,373	+				-2.5
2,673,373	+				-1.4
2,673,373	+				-0.7
2,673,374	-				-1.7
2,673,374	-				-2.4
2,673,374	-				-2.9
2,673,374	-				-2.9
2,673,374	-				-1.1
2,673,375	+				-1.4
2,673,375	+				-2.8
2,673,375	+				-0.1
2,673,375	+				-3.3
2,673,375	+				-2.8
2,673,376	-				+0.1
2,673,376	-				-2.7
2,673,397	+				-2.5
2,673,397	+				-3.7
2,673,397	+				-1.7
2,673,397	+				-1.4
2,673,397	+				-1.7
2,673,397	+				-4.4
2,673,398	-				-3.4
2,673,398	-				-1.7
2,673,398	-				-1.2
2,673,576	-		Sama_2212	0.15	-3.5
2,673,576	-		Sama_2212	0.15	-3.9
2,673,576	-		Sama_2212	0.15	-3.8
2,673,580	-		Sama_2212	0.16	-2.1
2,673,580	-		Sama_2212	0.16	-1.4
2,673,580	-		Sama_2212	0.16	-3.9
2,673,592	+		Sama_2212	0.16	-3.8
2,673,593	-		Sama_2212	0.16	-1.7
2,673,593	-		Sama_2212	0.16	-0.7
2,673,593	-		Sama_2212	0.16	-2.7
2,673,593	-		Sama_2212	0.16	-0.7
2,673,599	+		Sama_2212	0.17	-0.7
2,673,599	+		Sama_2212	0.17	-3.4
2,673,599	+		Sama_2212	0.17	-3.0
2,673,599	+		Sama_2212	0.17	-3.5
2,673,599	+		Sama_2212	0.17	-2.1
2,673,599	+		Sama_2212	0.17	-2.5
2,673,600	-		Sama_2212	0.17	-3.5
2,673,600	-		Sama_2212	0.17	-2.1
2,673,600	-		Sama_2212	0.17	-3.0
2,673,602	+		Sama_2212	0.17	-3.5
2,673,603	-		Sama_2212	0.17	-0.2
2,673,621	+		Sama_2212	0.18	-1.9
2,673,621	+		Sama_2212	0.18	-2.2
2,673,621	+		Sama_2212	0.18	-1.9
2,673,622	-		Sama_2212	0.18	-1.9
2,673,622	-		Sama_2212	0.18	-2.7
2,673,622	-		Sama_2212	0.18	-2.4
2,673,622	-		Sama_2212	0.18	-3.0
2,673,675	+		Sama_2212	0.21	-2.9
2,673,712	-		Sama_2212	0.23	-3.1
2,673,747	+		Sama_2212	0.25	-2.7
2,673,747	+		Sama_2212	0.25	+1.1
2,673,748	-		Sama_2212	0.25	-1.7
2,673,748	-		Sama_2212	0.25	-3.2
2,673,748	-		Sama_2212	0.25	-1.7
2,673,748	-		Sama_2212	0.25	-2.5
2,673,783	+		Sama_2212	0.27	-3.2
2,673,783	+		Sama_2212	0.27	-2.4
2,673,784	-		Sama_2212	0.27	-3.1
2,673,786	+		Sama_2212	0.27	-2.8
2,673,820	+		Sama_2212	0.29	-3.7
2,673,820	+		Sama_2212	0.29	-2.5
2,673,821	-		Sama_2212	0.29	-1.2
2,673,897	+		Sama_2212	0.33	-3.8
2,673,898	-		Sama_2212	0.33	-3.1
2,673,898	-		Sama_2212	0.33	-2.5
2,673,898	-		Sama_2212	0.33	+0.9
2,673,905	+		Sama_2212	0.34	-2.8
2,673,906	-		Sama_2212	0.34	-1.4
2,673,906	-		Sama_2212	0.34	-2.4
2,673,908	+		Sama_2212	0.34	-1.1
2,673,928	+		Sama_2212	0.35	-3.2
2,673,928	+		Sama_2212	0.35	-3.5
2,673,928	+		Sama_2212	0.35	-0.3
2,673,928	+		Sama_2212	0.35	-3.9
2,673,929	-		Sama_2212	0.35	-0.7
2,673,962	+		Sama_2212	0.37	-2.2
2,673,962	+		Sama_2212	0.37	-1.4
2,673,962	+		Sama_2212	0.37	-1.4
2,673,962	+		Sama_2212	0.37	-2.7
2,673,963	-		Sama_2212	0.37	-0.7
2,673,997	-		Sama_2212	0.39	-0.7
2,674,013	+		Sama_2212	0.40	-3.1
2,674,013	+		Sama_2212	0.40	-1.7
2,674,014	-		Sama_2212	0.40	-1.1
2,674,020	+		Sama_2212	0.40	-2.1
2,674,049	+		Sama_2212	0.42	-1.1
2,674,050	-		Sama_2212	0.42	-3.2
2,674,062	+		Sama_2212	0.42	-1.1
2,674,062	+		Sama_2212	0.42	-3.4
2,674,063	-		Sama_2212	0.42	-1.4
2,674,125	+		Sama_2212	0.46	-1.4
2,674,125	+		Sama_2212	0.46	-1.2
2,674,174	+		Sama_2212	0.48	-0.7
2,674,175	-		Sama_2212	0.49	-2.9
2,674,197	+		Sama_2212	0.50	-1.8
2,674,197	+		Sama_2212	0.50	-1.1
2,674,197	+		Sama_2212	0.50	-4.1
2,674,198	-		Sama_2212	0.50	-2.1
2,674,198	-		Sama_2212	0.50	-2.2
2,674,198	-		Sama_2212	0.50	-3.1
2,674,199	+		Sama_2212	0.50	-1.2
2,674,199	+		Sama_2212	0.50	-1.1
2,674,199	+		Sama_2212	0.50	-1.7
2,674,199	+		Sama_2212	0.50	-3.2
2,674,199	+		Sama_2212	0.50	+0.7
2,674,199	+		Sama_2212	0.50	-2.8
2,674,200	-		Sama_2212	0.50	-2.9
2,674,200	-		Sama_2212	0.50	-1.7
2,674,200	-		Sama_2212	0.50	-2.1
2,674,200	-		Sama_2212	0.50	-3.3
2,674,239	+		Sama_2212	0.52	-4.2
2,674,239	+		Sama_2212	0.52	-0.7
2,674,240	-		Sama_2212	0.52	-1.4
2,674,240	-		Sama_2212	0.52	-1.7
2,674,259	+		Sama_2212	0.53	-4.3
2,674,260	-		Sama_2212	0.53	-2.8
2,674,397	+		Sama_2212	0.61	-3.1
2,674,414	+		Sama_2212	0.62	-1.1
2,674,485	+		Sama_2212	0.66	-2.8
2,674,486	-		Sama_2212	0.66	+0.3
2,674,486	-		Sama_2212	0.66	-3.6
2,674,486	-		Sama_2212	0.66	-2.5
2,674,486	-		Sama_2212	0.66	-2.9
2,674,486	-		Sama_2212	0.66	-2.2
2,674,486	-		Sama_2212	0.66	-0.8
2,674,486	-		Sama_2212	0.66	-1.4
2,674,565	+		Sama_2212	0.70	-1.9
2,674,566	-		Sama_2212	0.70	-4.2
2,674,607	+		Sama_2212	0.72	-3.3
2,674,640	+		Sama_2212	0.74	+0.8
2,674,657	+		Sama_2212	0.75	-0.1
2,674,675	+		Sama_2212	0.76	-2.2
2,674,676	-		Sama_2212	0.76	-0.7
2,674,870	+		Sama_2212	0.87	-2.1
2,674,871	-		Sama_2212	0.87	-2.8
2,674,871	-		Sama_2212	0.87	-0.7
2,674,871	-		Sama_2212	0.87	-1.6
2,674,871	-		Sama_2212	0.87	-1.9
2,674,932	+				+1.9
2,674,933	-				-3.7
2,674,935	+				+0.3
2,674,935	+				-1.9
2,674,935	+				-2.9
2,674,935	+				-1.0
2,674,936	-				-2.7
2,674,936	-				-3.7
2,674,936	-				-2.7
2,674,936	-				-3.4
2,674,936	-				+0.1
2,674,936	-				-3.3
2,674,936	-				-1.1
2,674,936	-				-2.9
2,674,977	-				-2.1
2,674,988	+				-3.4
2,675,070	+				-0.7
2,675,071	-				-2.4
2,675,071	-				-1.7
2,675,071	-				-1.1
2,675,091	+				-2.5
2,675,091	+				+0.6
2,675,091	+				-1.7
2,675,091	+				-0.1
2,675,091	+				-2.9
2,675,091	+				-3.1
2,675,092	-				-1.2
2,675,092	-				-0.7
2,675,092	-				-3.5
2,675,092	-				-1.4
2,675,092	-				-2.4
2,675,092	-				-2.5
2,675,092	-				-1.1
2,675,092	-				-3.0
2,675,092	-				-2.4
2,675,128	-				-3.0
2,675,226	+				-1.7
2,675,227	-				-2.8
2,675,227	-				-2.5
2,675,256	-		Sama_2213	0.12	-3.5
2,675,322	-		Sama_2213	0.17	-2.2
2,675,322	-		Sama_2213	0.17	-2.5
2,675,322	-		Sama_2213	0.17	-1.9
2,675,402	-		Sama_2213	0.22	-2.2
2,675,436	+		Sama_2213	0.25	-2.8
2,675,436	+		Sama_2213	0.25	-3.7
2,675,436	+		Sama_2213	0.25	-2.5
2,675,436	+		Sama_2213	0.25	-2.2
2,675,436	+		Sama_2213	0.25	-5.1
2,675,436	+		Sama_2213	0.25	-2.7
2,675,437	-		Sama_2213	0.25	-0.7
2,675,437	-		Sama_2213	0.25	-1.4
2,675,437	-		Sama_2213	0.25	-1.4
2,675,437	-		Sama_2213	0.25	-1.1
2,675,562	-		Sama_2213	0.34	-2.8
2,675,586	+		Sama_2213	0.36	-1.4
2,675,586	+		Sama_2213	0.36	-1.4
2,675,586	+		Sama_2213	0.36	-2.1
2,675,586	+		Sama_2213	0.36	+1.5
2,675,587	-		Sama_2213	0.36	-3.1
2,675,587	-		Sama_2213	0.36	-2.4
2,675,641	-		Sama_2213	0.40	-4.3
2,675,928	+		Sama_2213	0.60	-3.5
2,675,928	+		Sama_2213	0.60	-3.5
2,675,928	+		Sama_2213	0.60	-3.2
2,675,928	+		Sama_2213	0.60	-2.2
2,675,929	-		Sama_2213	0.60	-0.1
2,675,929	-		Sama_2213	0.60	-2.4
2,675,929	-		Sama_2213	0.60	-1.4
2,676,011	+		Sama_2213	0.66	-1.7
2,676,011	+		Sama_2213	0.66	-2.7
2,676,012	-		Sama_2213	0.66	-1.7
2,676,017	-		Sama_2213	0.67	-2.8
2,676,042	+		Sama_2213	0.69	-2.5
2,676,042	+		Sama_2213	0.69	-3.0
2,676,072	+		Sama_2213	0.71	-3.9