Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2107 and Sama_2108 are separated by 129 nucleotides Sama_2108 and Sama_2109 are separated by 36 nucleotides Sama_2109 and Sama_2110 are separated by 69 nucleotides Sama_2110 and Sama_2111 are separated by 124 nucleotides
Sama_2107: Sama_2107 - flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1-like protein (RefSeq), at 2,550,422 to 2,551,432
_2107
Sama_2108: Sama_2108 - hypothetical protein (RefSeq), at 2,551,562 to 2,552,251
_2108
Sama_2109: Sama_2109 - putative lipoprotein (RefSeq), at 2,552,288 to 2,552,767
_2109
Sama_2110: Sama_2110 - hypothetical protein (RefSeq), at 2,552,837 to 2,553,055
_2110
Sama_2111: Sama_2111 - MATE efflux family protein (RefSeq), at 2,553,180 to 2,554,697
_2111
Position (kb)
2551
2552
2553 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2550.670 kb on + strand, within Sama_2107 at 2550.689 kb on + strand, within Sama_2107 at 2550.689 kb on + strand, within Sama_2107 at 2550.690 kb on - strand, within Sama_2107 at 2550.694 kb on + strand, within Sama_2107 at 2550.695 kb on - strand, within Sama_2107 at 2550.712 kb on + strand, within Sama_2107 at 2550.712 kb on + strand, within Sama_2107 at 2550.712 kb on + strand, within Sama_2107 at 2550.713 kb on - strand, within Sama_2107 at 2550.713 kb on - strand, within Sama_2107 at 2550.713 kb on - strand, within Sama_2107 at 2550.747 kb on + strand, within Sama_2107 at 2550.748 kb on - strand, within Sama_2107 at 2550.827 kb on + strand, within Sama_2107 at 2550.848 kb on + strand, within Sama_2107 at 2550.854 kb on - strand, within Sama_2107 at 2550.882 kb on + strand, within Sama_2107 at 2550.882 kb on + strand, within Sama_2107 at 2550.883 kb on - strand, within Sama_2107 at 2550.968 kb on - strand, within Sama_2107 at 2550.968 kb on - strand, within Sama_2107 at 2550.968 kb on - strand, within Sama_2107 at 2550.980 kb on + strand, within Sama_2107 at 2550.981 kb on - strand, within Sama_2107 at 2550.981 kb on - strand, within Sama_2107 at 2550.981 kb on - strand, within Sama_2107 at 2550.986 kb on + strand, within Sama_2107 at 2550.986 kb on + strand, within Sama_2107 at 2550.987 kb on - strand, within Sama_2107 at 2551.027 kb on - strand, within Sama_2107 at 2551.027 kb on - strand, within Sama_2107 at 2551.027 kb on - strand, within Sama_2107 at 2551.064 kb on - strand, within Sama_2107 at 2551.064 kb on - strand, within Sama_2107 at 2551.080 kb on + strand, within Sama_2107 at 2551.080 kb on + strand, within Sama_2107 at 2551.081 kb on - strand, within Sama_2107 at 2551.081 kb on - strand, within Sama_2107 at 2551.102 kb on + strand, within Sama_2107 at 2551.102 kb on + strand, within Sama_2107 at 2551.103 kb on - strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.164 kb on + strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.165 kb on - strand, within Sama_2107 at 2551.187 kb on + strand, within Sama_2107 at 2551.224 kb on + strand, within Sama_2107 at 2551.224 kb on + strand, within Sama_2107 at 2551.224 kb on + strand, within Sama_2107 at 2551.224 kb on + strand, within Sama_2107 at 2551.224 kb on + strand, within Sama_2107 at 2551.224 kb on + strand, within Sama_2107 at 2551.224 kb on + strand, within Sama_2107 at 2551.225 kb on - strand, within Sama_2107 at 2551.225 kb on - strand, within Sama_2107 at 2551.225 kb on - strand, within Sama_2107 at 2551.225 kb on - strand, within Sama_2107 at 2551.225 kb on - strand, within Sama_2107 at 2551.225 kb on - strand, within Sama_2107 at 2551.225 kb on - strand, within Sama_2107 at 2551.338 kb on + strand at 2551.342 kb on + strand at 2551.343 kb on - strand at 2551.466 kb on - strand at 2551.513 kb on + strand at 2551.514 kb on - strand at 2551.544 kb on - strand at 2551.578 kb on + strand at 2551.578 kb on + strand at 2551.579 kb on - strand at 2551.579 kb on - strand at 2551.579 kb on - strand at 2551.617 kb on + strand at 2551.618 kb on - strand at 2551.619 kb on + strand at 2551.619 kb on + strand at 2551.619 kb on + strand at 2551.620 kb on - strand at 2551.620 kb on - strand at 2551.620 kb on - strand at 2551.620 kb on - strand at 2551.620 kb on - strand at 2551.620 kb on - strand at 2551.643 kb on - strand, within Sama_2108 at 2551.673 kb on - strand, within Sama_2108 at 2551.673 kb on - strand, within Sama_2108 at 2551.673 kb on - strand, within Sama_2108 at 2551.692 kb on + strand, within Sama_2108 at 2551.724 kb on - strand, within Sama_2108 at 2551.826 kb on - strand, within Sama_2108 at 2551.836 kb on + strand, within Sama_2108 at 2551.836 kb on + strand, within Sama_2108 at 2551.836 kb on + strand, within Sama_2108 at 2551.850 kb on - strand, within Sama_2108 at 2551.869 kb on + strand, within Sama_2108 at 2551.869 kb on + strand, within Sama_2108 at 2551.869 kb on + strand, within Sama_2108 at 2551.870 kb on - strand, within Sama_2108 at 2551.870 kb on - strand, within Sama_2108 at 2551.870 kb on - strand, within Sama_2108 at 2551.870 kb on - strand, within Sama_2108 at 2551.870 kb on - strand, within Sama_2108 at 2551.883 kb on + strand, within Sama_2108 at 2551.899 kb on + strand, within Sama_2108 at 2551.900 kb on - strand, within Sama_2108 at 2551.942 kb on - strand, within Sama_2108 at 2551.968 kb on - strand, within Sama_2108 at 2552.006 kb on - strand, within Sama_2108 at 2552.034 kb on - strand, within Sama_2108 at 2552.034 kb on - strand, within Sama_2108 at 2552.034 kb on - strand, within Sama_2108 at 2552.087 kb on + strand, within Sama_2108 at 2552.152 kb on + strand, within Sama_2108 at 2552.152 kb on + strand, within Sama_2108 at 2552.153 kb on - strand, within Sama_2108 at 2552.177 kb on + strand, within Sama_2108 at 2552.177 kb on + strand, within Sama_2108 at 2552.177 kb on + strand, within Sama_2108 at 2552.178 kb on - strand, within Sama_2108 at 2552.178 kb on - strand, within Sama_2108 at 2552.178 kb on - strand, within Sama_2108 at 2552.178 kb on - strand, within Sama_2108 at 2552.178 kb on - strand, within Sama_2108 at 2552.178 kb on - strand, within Sama_2108 at 2552.180 kb on + strand, within Sama_2108 at 2552.222 kb on - strand at 2552.277 kb on + strand at 2552.277 kb on + strand at 2552.277 kb on + strand at 2552.278 kb on - strand at 2552.278 kb on - strand at 2552.283 kb on + strand at 2552.324 kb on - strand at 2552.355 kb on + strand, within Sama_2109 at 2552.356 kb on - strand, within Sama_2109 at 2552.423 kb on + strand, within Sama_2109 at 2552.423 kb on + strand, within Sama_2109 at 2552.424 kb on - strand, within Sama_2109 at 2552.424 kb on - strand, within Sama_2109 at 2552.424 kb on - strand, within Sama_2109 at 2552.485 kb on + strand, within Sama_2109 at 2552.486 kb on - strand, within Sama_2109 at 2552.486 kb on - strand, within Sama_2109 at 2552.486 kb on - strand, within Sama_2109 at 2552.489 kb on + strand, within Sama_2109 at 2552.489 kb on + strand, within Sama_2109 at 2552.489 kb on + strand, within Sama_2109 at 2552.490 kb on - strand, within Sama_2109 at 2552.490 kb on - strand, within Sama_2109 at 2552.490 kb on - strand, within Sama_2109 at 2552.515 kb on - strand, within Sama_2109 at 2552.523 kb on + strand, within Sama_2109 at 2552.523 kb on + strand, within Sama_2109 at 2552.523 kb on + strand, within Sama_2109 at 2552.587 kb on - strand, within Sama_2109 at 2552.665 kb on - strand, within Sama_2109 at 2552.665 kb on - strand, within Sama_2109 at 2552.765 kb on + strand at 2552.765 kb on + strand at 2552.765 kb on + strand at 2552.776 kb on - strand at 2552.807 kb on + strand at 2552.807 kb on + strand at 2552.808 kb on - strand at 2552.836 kb on + strand at 2552.836 kb on + strand at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.936 kb on + strand, within Sama_2110 at 2552.937 kb on - strand, within Sama_2110 at 2552.937 kb on - strand, within Sama_2110 at 2552.937 kb on - strand, within Sama_2110 at 2552.937 kb on - strand, within Sama_2110 at 2552.998 kb on + strand, within Sama_2110 at 2552.999 kb on - strand, within Sama_2110 at 2553.004 kb on + strand, within Sama_2110 at 2553.004 kb on + strand, within Sama_2110 at 2553.005 kb on - strand, within Sama_2110 at 2553.084 kb on + strand at 2553.085 kb on - strand at 2553.085 kb on - strand at 2553.091 kb on + strand at 2553.106 kb on + strand at 2553.106 kb on + strand at 2553.106 kb on + strand at 2553.107 kb on - strand at 2553.123 kb on + strand at 2553.161 kb on + strand at 2553.161 kb on + strand at 2553.161 kb on + strand at 2553.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 2,550,670 + Sama_2107 0.25 +0.8 2,550,689 + Sama_2107 0.26 -2.0 2,550,689 + Sama_2107 0.26 -3.0 2,550,690 - Sama_2107 0.27 -0.2 2,550,694 + Sama_2107 0.27 +1.2 2,550,695 - Sama_2107 0.27 +1.4 2,550,712 + Sama_2107 0.29 +2.3 2,550,712 + Sama_2107 0.29 +0.6 2,550,712 + Sama_2107 0.29 +1.6 2,550,713 - Sama_2107 0.29 -0.2 2,550,713 - Sama_2107 0.29 -0.2 2,550,713 - Sama_2107 0.29 +1.3 2,550,747 + Sama_2107 0.32 -1.2 2,550,748 - Sama_2107 0.32 +0.5 2,550,827 + Sama_2107 0.40 +0.4 2,550,848 + Sama_2107 0.42 -1.3 2,550,854 - Sama_2107 0.43 +0.8 2,550,882 + Sama_2107 0.45 -2.3 2,550,882 + Sama_2107 0.45 -1.5 2,550,883 - Sama_2107 0.46 -0.5 2,550,968 - Sama_2107 0.54 -1.5 2,550,968 - Sama_2107 0.54 -1.2 2,550,968 - Sama_2107 0.54 +1.1 2,550,980 + Sama_2107 0.55 +1.4 2,550,981 - Sama_2107 0.55 -2.3 2,550,981 - Sama_2107 0.55 +1.3 2,550,981 - Sama_2107 0.55 -0.7 2,550,986 + Sama_2107 0.56 -0.7 2,550,986 + Sama_2107 0.56 +0.8 2,550,987 - Sama_2107 0.56 +1.6 2,551,027 - Sama_2107 0.60 +2.8 2,551,027 - Sama_2107 0.60 -0.4 2,551,027 - Sama_2107 0.60 +1.6 2,551,064 - Sama_2107 0.64 +0.3 2,551,064 - Sama_2107 0.64 -3.1 2,551,080 + Sama_2107 0.65 -0.2 2,551,080 + Sama_2107 0.65 +0.1 2,551,081 - Sama_2107 0.65 +0.5 2,551,081 - Sama_2107 0.65 +1.0 2,551,102 + Sama_2107 0.67 +1.4 2,551,102 + Sama_2107 0.67 -0.7 2,551,103 - Sama_2107 0.67 +0.3 2,551,164 + Sama_2107 0.73 -0.2 2,551,164 + Sama_2107 0.73 -0.2 2,551,164 + Sama_2107 0.73 -1.1 2,551,164 + Sama_2107 0.73 +2.7 2,551,164 + Sama_2107 0.73 +1.1 2,551,164 + Sama_2107 0.73 -1.4 2,551,164 + Sama_2107 0.73 -0.3 2,551,164 + Sama_2107 0.73 +0.2 2,551,164 + Sama_2107 0.73 +3.0 2,551,164 + Sama_2107 0.73 +0.8 2,551,164 + Sama_2107 0.73 -2.0 2,551,165 - Sama_2107 0.73 -1.0 2,551,165 - Sama_2107 0.73 +1.1 2,551,165 - Sama_2107 0.73 +0.1 2,551,165 - Sama_2107 0.73 -1.3 2,551,165 - Sama_2107 0.73 -1.5 2,551,165 - Sama_2107 0.73 +1.0 2,551,165 - Sama_2107 0.73 +0.8 2,551,165 - Sama_2107 0.73 -2.7 2,551,165 - Sama_2107 0.73 +1.3 2,551,165 - Sama_2107 0.73 +1.0 2,551,165 - Sama_2107 0.73 +2.5 2,551,165 - Sama_2107 0.73 -0.8 2,551,165 - Sama_2107 0.73 -0.2 2,551,165 - Sama_2107 0.73 +2.2 2,551,187 + Sama_2107 0.76 +2.4 2,551,224 + Sama_2107 0.79 -1.5 2,551,224 + Sama_2107 0.79 -0.7 2,551,224 + Sama_2107 0.79 -0.6 2,551,224 + Sama_2107 0.79 -1.5 2,551,224 + Sama_2107 0.79 +0.0 2,551,224 + Sama_2107 0.79 -1.6 2,551,224 + Sama_2107 0.79 -1.2 2,551,225 - Sama_2107 0.79 -0.4 2,551,225 - Sama_2107 0.79 -0.9 2,551,225 - Sama_2107 0.79 +1.0 2,551,225 - Sama_2107 0.79 -1.0 2,551,225 - Sama_2107 0.79 +0.8 2,551,225 - Sama_2107 0.79 -0.7 2,551,225 - Sama_2107 0.79 -0.5 2,551,338 + +0.6 2,551,342 + +0.4 2,551,343 - +1.1 2,551,466 - +2.3 2,551,513 + -1.2 2,551,514 - -3.4 2,551,544 - -1.3 2,551,578 + -0.2 2,551,578 + -3.2 2,551,579 - +0.3 2,551,579 - -2.0 2,551,579 - +1.0 2,551,617 + +0.8 2,551,618 - +0.4 2,551,619 + -2.2 2,551,619 + +0.3 2,551,619 + -1.2 2,551,620 - +1.2 2,551,620 - +0.3 2,551,620 - +0.0 2,551,620 - +0.3 2,551,620 - +0.8 2,551,620 - -0.2 2,551,643 - Sama_2108 0.12 -0.6 2,551,673 - Sama_2108 0.16 -1.0 2,551,673 - Sama_2108 0.16 -0.2 2,551,673 - Sama_2108 0.16 -1.5 2,551,692 + Sama_2108 0.19 +1.5 2,551,724 - Sama_2108 0.23 -2.9 2,551,826 - Sama_2108 0.38 -0.2 2,551,836 + Sama_2108 0.40 -2.0 2,551,836 + Sama_2108 0.40 +0.3 2,551,836 + Sama_2108 0.40 +1.5 2,551,850 - Sama_2108 0.42 -2.1 2,551,869 + Sama_2108 0.44 -1.4 2,551,869 + Sama_2108 0.44 -1.7 2,551,869 + Sama_2108 0.44 +0.8 2,551,870 - Sama_2108 0.45 +1.6 2,551,870 - Sama_2108 0.45 -0.3 2,551,870 - Sama_2108 0.45 +3.4 2,551,870 - Sama_2108 0.45 +2.4 2,551,870 - Sama_2108 0.45 -1.0 2,551,883 + Sama_2108 0.47 -0.7 2,551,899 + Sama_2108 0.49 -2.3 2,551,900 - Sama_2108 0.49 -1.5 2,551,942 - Sama_2108 0.55 +2.4 2,551,968 - Sama_2108 0.59 -0.1 2,552,006 - Sama_2108 0.64 -2.6 2,552,034 - Sama_2108 0.68 +0.2 2,552,034 - Sama_2108 0.68 -0.7 2,552,034 - Sama_2108 0.68 +0.6 2,552,087 + Sama_2108 0.76 -1.5 2,552,152 + Sama_2108 0.86 -0.2 2,552,152 + Sama_2108 0.86 -2.2 2,552,153 - Sama_2108 0.86 -3.7 2,552,177 + Sama_2108 0.89 +0.8 2,552,177 + Sama_2108 0.89 +0.0 2,552,177 + Sama_2108 0.89 -0.7 2,552,178 - Sama_2108 0.89 +0.7 2,552,178 - Sama_2108 0.89 +0.6 2,552,178 - Sama_2108 0.89 -1.5 2,552,178 - Sama_2108 0.89 -0.9 2,552,178 - Sama_2108 0.89 -2.5 2,552,178 - Sama_2108 0.89 -1.1 2,552,180 + Sama_2108 0.90 -0.7 2,552,222 - +0.1 2,552,277 + +0.6 2,552,277 + +1.2 2,552,277 + -0.2 2,552,278 - +0.3 2,552,278 - +1.0 2,552,283 + -0.6 2,552,324 - -1.5 2,552,355 + Sama_2109 0.14 +0.2 2,552,356 - Sama_2109 0.14 -2.0 2,552,423 + Sama_2109 0.28 +1.2 2,552,423 + Sama_2109 0.28 -0.3 2,552,424 - Sama_2109 0.28 +0.8 2,552,424 - Sama_2109 0.28 +2.8 2,552,424 - Sama_2109 0.28 -0.0 2,552,485 + Sama_2109 0.41 +0.3 2,552,486 - Sama_2109 0.41 -1.2 2,552,486 - Sama_2109 0.41 -0.5 2,552,486 - Sama_2109 0.41 -1.7 2,552,489 + Sama_2109 0.42 +1.4 2,552,489 + Sama_2109 0.42 +0.6 2,552,489 + Sama_2109 0.42 -0.2 2,552,490 - Sama_2109 0.42 +2.0 2,552,490 - Sama_2109 0.42 +1.5 2,552,490 - Sama_2109 0.42 +0.8 2,552,515 - Sama_2109 0.47 +0.1 2,552,523 + Sama_2109 0.49 -0.2 2,552,523 + Sama_2109 0.49 -0.7 2,552,523 + Sama_2109 0.49 +1.3 2,552,587 - Sama_2109 0.62 +1.4 2,552,665 - Sama_2109 0.79 -2.5 2,552,665 - Sama_2109 0.79 -1.3 2,552,765 + +0.3 2,552,765 + +1.0 2,552,765 + -0.5 2,552,776 - +1.0 2,552,807 + +0.6 2,552,807 + -1.2 2,552,808 - -2.0 2,552,836 + +0.7 2,552,836 + -1.7 2,552,936 + Sama_2110 0.45 -1.0 2,552,936 + Sama_2110 0.45 -1.1 2,552,936 + Sama_2110 0.45 +3.0 2,552,936 + Sama_2110 0.45 -0.5 2,552,936 + Sama_2110 0.45 +0.4 2,552,936 + Sama_2110 0.45 +1.9 2,552,936 + Sama_2110 0.45 -1.9 2,552,936 + Sama_2110 0.45 +0.6 2,552,936 + Sama_2110 0.45 +0.9 2,552,936 + Sama_2110 0.45 -0.3 2,552,936 + Sama_2110 0.45 -0.2 2,552,937 - Sama_2110 0.46 +0.4 2,552,937 - Sama_2110 0.46 +1.0 2,552,937 - Sama_2110 0.46 -0.4 2,552,937 - Sama_2110 0.46 -1.5 2,552,998 + Sama_2110 0.74 -0.0 2,552,999 - Sama_2110 0.74 -1.2 2,553,004 + Sama_2110 0.76 -0.5 2,553,004 + Sama_2110 0.76 -0.7 2,553,005 - Sama_2110 0.77 -1.2 2,553,084 + -1.7 2,553,085 - +0.3 2,553,085 - -1.2 2,553,091 + -0.5 2,553,106 + +1.2 2,553,106 + -0.2 2,553,106 + +2.5 2,553,107 - -1.0 2,553,123 + -1.7 2,553,161 + +0.3 2,553,161 + -2.5 2,553,161 + -0.4 2,553,178 + -0.5
Or see this region's nucleotide sequence