Strain Fitness in Shewanella amazonensis SB2B around Sama_2108

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2107 and Sama_2108 are separated by 129 nucleotidesSama_2108 and Sama_2109 are separated by 36 nucleotidesSama_2109 and Sama_2110 are separated by 69 nucleotidesSama_2110 and Sama_2111 are separated by 124 nucleotides Sama_2107: Sama_2107 - flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1-like protein (RefSeq), at 2,550,422 to 2,551,432 _2107 Sama_2108: Sama_2108 - hypothetical protein (RefSeq), at 2,551,562 to 2,552,251 _2108 Sama_2109: Sama_2109 - putative lipoprotein (RefSeq), at 2,552,288 to 2,552,767 _2109 Sama_2110: Sama_2110 - hypothetical protein (RefSeq), at 2,552,837 to 2,553,055 _2110 Sama_2111: Sama_2111 - MATE efflux family protein (RefSeq), at 2,553,180 to 2,554,697 _2111 Position (kb) 2551 2552 2553Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2550.670 kb on + strand, within Sama_2107at 2550.689 kb on + strand, within Sama_2107at 2550.689 kb on + strand, within Sama_2107at 2550.690 kb on - strand, within Sama_2107at 2550.694 kb on + strand, within Sama_2107at 2550.695 kb on - strand, within Sama_2107at 2550.712 kb on + strand, within Sama_2107at 2550.712 kb on + strand, within Sama_2107at 2550.712 kb on + strand, within Sama_2107at 2550.713 kb on - strand, within Sama_2107at 2550.713 kb on - strand, within Sama_2107at 2550.713 kb on - strand, within Sama_2107at 2550.747 kb on + strand, within Sama_2107at 2550.748 kb on - strand, within Sama_2107at 2550.827 kb on + strand, within Sama_2107at 2550.848 kb on + strand, within Sama_2107at 2550.854 kb on - strand, within Sama_2107at 2550.882 kb on + strand, within Sama_2107at 2550.882 kb on + strand, within Sama_2107at 2550.883 kb on - strand, within Sama_2107at 2550.968 kb on - strand, within Sama_2107at 2550.968 kb on - strand, within Sama_2107at 2550.968 kb on - strand, within Sama_2107at 2550.980 kb on + strand, within Sama_2107at 2550.981 kb on - strand, within Sama_2107at 2550.981 kb on - strand, within Sama_2107at 2550.981 kb on - strand, within Sama_2107at 2550.986 kb on + strand, within Sama_2107at 2550.986 kb on + strand, within Sama_2107at 2550.987 kb on - strand, within Sama_2107at 2551.027 kb on - strand, within Sama_2107at 2551.027 kb on - strand, within Sama_2107at 2551.027 kb on - strand, within Sama_2107at 2551.064 kb on - strand, within Sama_2107at 2551.064 kb on - strand, within Sama_2107at 2551.080 kb on + strand, within Sama_2107at 2551.080 kb on + strand, within Sama_2107at 2551.081 kb on - strand, within Sama_2107at 2551.081 kb on - strand, within Sama_2107at 2551.102 kb on + strand, within Sama_2107at 2551.102 kb on + strand, within Sama_2107at 2551.103 kb on - strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.164 kb on + strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.165 kb on - strand, within Sama_2107at 2551.187 kb on + strand, within Sama_2107at 2551.224 kb on + strand, within Sama_2107at 2551.224 kb on + strand, within Sama_2107at 2551.224 kb on + strand, within Sama_2107at 2551.224 kb on + strand, within Sama_2107at 2551.224 kb on + strand, within Sama_2107at 2551.224 kb on + strand, within Sama_2107at 2551.224 kb on + strand, within Sama_2107at 2551.225 kb on - strand, within Sama_2107at 2551.225 kb on - strand, within Sama_2107at 2551.225 kb on - strand, within Sama_2107at 2551.225 kb on - strand, within Sama_2107at 2551.225 kb on - strand, within Sama_2107at 2551.225 kb on - strand, within Sama_2107at 2551.225 kb on - strand, within Sama_2107at 2551.338 kb on + strandat 2551.342 kb on + strandat 2551.343 kb on - strandat 2551.466 kb on - strandat 2551.513 kb on + strandat 2551.514 kb on - strandat 2551.544 kb on - strandat 2551.578 kb on + strandat 2551.578 kb on + strandat 2551.579 kb on - strandat 2551.579 kb on - strandat 2551.579 kb on - strandat 2551.617 kb on + strandat 2551.618 kb on - strandat 2551.619 kb on + strandat 2551.619 kb on + strandat 2551.619 kb on + strandat 2551.620 kb on - strandat 2551.620 kb on - strandat 2551.620 kb on - strandat 2551.620 kb on - strandat 2551.620 kb on - strandat 2551.620 kb on - strandat 2551.643 kb on - strand, within Sama_2108at 2551.673 kb on - strand, within Sama_2108at 2551.673 kb on - strand, within Sama_2108at 2551.673 kb on - strand, within Sama_2108at 2551.692 kb on + strand, within Sama_2108at 2551.724 kb on - strand, within Sama_2108at 2551.826 kb on - strand, within Sama_2108at 2551.836 kb on + strand, within Sama_2108at 2551.836 kb on + strand, within Sama_2108at 2551.836 kb on + strand, within Sama_2108at 2551.850 kb on - strand, within Sama_2108at 2551.869 kb on + strand, within Sama_2108at 2551.869 kb on + strand, within Sama_2108at 2551.869 kb on + strand, within Sama_2108at 2551.870 kb on - strand, within Sama_2108at 2551.870 kb on - strand, within Sama_2108at 2551.870 kb on - strand, within Sama_2108at 2551.870 kb on - strand, within Sama_2108at 2551.870 kb on - strand, within Sama_2108at 2551.883 kb on + strand, within Sama_2108at 2551.899 kb on + strand, within Sama_2108at 2551.900 kb on - strand, within Sama_2108at 2551.942 kb on - strand, within Sama_2108at 2551.968 kb on - strand, within Sama_2108at 2552.006 kb on - strand, within Sama_2108at 2552.034 kb on - strand, within Sama_2108at 2552.034 kb on - strand, within Sama_2108at 2552.034 kb on - strand, within Sama_2108at 2552.087 kb on + strand, within Sama_2108at 2552.152 kb on + strand, within Sama_2108at 2552.152 kb on + strand, within Sama_2108at 2552.153 kb on - strand, within Sama_2108at 2552.177 kb on + strand, within Sama_2108at 2552.177 kb on + strand, within Sama_2108at 2552.177 kb on + strand, within Sama_2108at 2552.178 kb on - strand, within Sama_2108at 2552.178 kb on - strand, within Sama_2108at 2552.178 kb on - strand, within Sama_2108at 2552.178 kb on - strand, within Sama_2108at 2552.178 kb on - strand, within Sama_2108at 2552.178 kb on - strand, within Sama_2108at 2552.180 kb on + strand, within Sama_2108at 2552.222 kb on - strandat 2552.277 kb on + strandat 2552.277 kb on + strandat 2552.277 kb on + strandat 2552.278 kb on - strandat 2552.278 kb on - strandat 2552.283 kb on + strandat 2552.324 kb on - strandat 2552.355 kb on + strand, within Sama_2109at 2552.356 kb on - strand, within Sama_2109at 2552.423 kb on + strand, within Sama_2109at 2552.423 kb on + strand, within Sama_2109at 2552.424 kb on - strand, within Sama_2109at 2552.424 kb on - strand, within Sama_2109at 2552.424 kb on - strand, within Sama_2109at 2552.485 kb on + strand, within Sama_2109at 2552.486 kb on - strand, within Sama_2109at 2552.486 kb on - strand, within Sama_2109at 2552.486 kb on - strand, within Sama_2109at 2552.489 kb on + strand, within Sama_2109at 2552.489 kb on + strand, within Sama_2109at 2552.489 kb on + strand, within Sama_2109at 2552.490 kb on - strand, within Sama_2109at 2552.490 kb on - strand, within Sama_2109at 2552.490 kb on - strand, within Sama_2109at 2552.515 kb on - strand, within Sama_2109at 2552.523 kb on + strand, within Sama_2109at 2552.523 kb on + strand, within Sama_2109at 2552.523 kb on + strand, within Sama_2109at 2552.587 kb on - strand, within Sama_2109at 2552.665 kb on - strand, within Sama_2109at 2552.665 kb on - strand, within Sama_2109at 2552.765 kb on + strandat 2552.765 kb on + strandat 2552.765 kb on + strandat 2552.776 kb on - strandat 2552.807 kb on + strandat 2552.807 kb on + strandat 2552.808 kb on - strandat 2552.836 kb on + strandat 2552.836 kb on + strandat 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.936 kb on + strand, within Sama_2110at 2552.937 kb on - strand, within Sama_2110at 2552.937 kb on - strand, within Sama_2110at 2552.937 kb on - strand, within Sama_2110at 2552.937 kb on - strand, within Sama_2110at 2552.998 kb on + strand, within Sama_2110at 2552.999 kb on - strand, within Sama_2110at 2553.004 kb on + strand, within Sama_2110at 2553.004 kb on + strand, within Sama_2110at 2553.005 kb on - strand, within Sama_2110at 2553.084 kb on + strandat 2553.085 kb on - strandat 2553.085 kb on - strandat 2553.091 kb on + strandat 2553.106 kb on + strandat 2553.106 kb on + strandat 2553.106 kb on + strandat 2553.107 kb on - strandat 2553.123 kb on + strandat 2553.161 kb on + strandat 2553.161 kb on + strandat 2553.161 kb on + strandat 2553.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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2,550,670 + Sama_2107 0.25 +0.8
2,550,689 + Sama_2107 0.26 -2.0
2,550,689 + Sama_2107 0.26 -3.0
2,550,690 - Sama_2107 0.27 -0.2
2,550,694 + Sama_2107 0.27 +1.2
2,550,695 - Sama_2107 0.27 +1.4
2,550,712 + Sama_2107 0.29 +2.3
2,550,712 + Sama_2107 0.29 +0.6
2,550,712 + Sama_2107 0.29 +1.6
2,550,713 - Sama_2107 0.29 -0.2
2,550,713 - Sama_2107 0.29 -0.2
2,550,713 - Sama_2107 0.29 +1.3
2,550,747 + Sama_2107 0.32 -1.2
2,550,748 - Sama_2107 0.32 +0.5
2,550,827 + Sama_2107 0.40 +0.4
2,550,848 + Sama_2107 0.42 -1.3
2,550,854 - Sama_2107 0.43 +0.8
2,550,882 + Sama_2107 0.45 -2.3
2,550,882 + Sama_2107 0.45 -1.5
2,550,883 - Sama_2107 0.46 -0.5
2,550,968 - Sama_2107 0.54 -1.5
2,550,968 - Sama_2107 0.54 -1.2
2,550,968 - Sama_2107 0.54 +1.1
2,550,980 + Sama_2107 0.55 +1.4
2,550,981 - Sama_2107 0.55 -2.3
2,550,981 - Sama_2107 0.55 +1.3
2,550,981 - Sama_2107 0.55 -0.7
2,550,986 + Sama_2107 0.56 -0.7
2,550,986 + Sama_2107 0.56 +0.8
2,550,987 - Sama_2107 0.56 +1.6
2,551,027 - Sama_2107 0.60 +2.8
2,551,027 - Sama_2107 0.60 -0.4
2,551,027 - Sama_2107 0.60 +1.6
2,551,064 - Sama_2107 0.64 +0.3
2,551,064 - Sama_2107 0.64 -3.1
2,551,080 + Sama_2107 0.65 -0.2
2,551,080 + Sama_2107 0.65 +0.1
2,551,081 - Sama_2107 0.65 +0.5
2,551,081 - Sama_2107 0.65 +1.0
2,551,102 + Sama_2107 0.67 +1.4
2,551,102 + Sama_2107 0.67 -0.7
2,551,103 - Sama_2107 0.67 +0.3
2,551,164 + Sama_2107 0.73 -0.2
2,551,164 + Sama_2107 0.73 -0.2
2,551,164 + Sama_2107 0.73 -1.1
2,551,164 + Sama_2107 0.73 +2.7
2,551,164 + Sama_2107 0.73 +1.1
2,551,164 + Sama_2107 0.73 -1.4
2,551,164 + Sama_2107 0.73 -0.3
2,551,164 + Sama_2107 0.73 +0.2
2,551,164 + Sama_2107 0.73 +3.0
2,551,164 + Sama_2107 0.73 +0.8
2,551,164 + Sama_2107 0.73 -2.0
2,551,165 - Sama_2107 0.73 -1.0
2,551,165 - Sama_2107 0.73 +1.1
2,551,165 - Sama_2107 0.73 +0.1
2,551,165 - Sama_2107 0.73 -1.3
2,551,165 - Sama_2107 0.73 -1.5
2,551,165 - Sama_2107 0.73 +1.0
2,551,165 - Sama_2107 0.73 +0.8
2,551,165 - Sama_2107 0.73 -2.7
2,551,165 - Sama_2107 0.73 +1.3
2,551,165 - Sama_2107 0.73 +1.0
2,551,165 - Sama_2107 0.73 +2.5
2,551,165 - Sama_2107 0.73 -0.8
2,551,165 - Sama_2107 0.73 -0.2
2,551,165 - Sama_2107 0.73 +2.2
2,551,187 + Sama_2107 0.76 +2.4
2,551,224 + Sama_2107 0.79 -1.5
2,551,224 + Sama_2107 0.79 -0.7
2,551,224 + Sama_2107 0.79 -0.6
2,551,224 + Sama_2107 0.79 -1.5
2,551,224 + Sama_2107 0.79 +0.0
2,551,224 + Sama_2107 0.79 -1.6
2,551,224 + Sama_2107 0.79 -1.2
2,551,225 - Sama_2107 0.79 -0.4
2,551,225 - Sama_2107 0.79 -0.9
2,551,225 - Sama_2107 0.79 +1.0
2,551,225 - Sama_2107 0.79 -1.0
2,551,225 - Sama_2107 0.79 +0.8
2,551,225 - Sama_2107 0.79 -0.7
2,551,225 - Sama_2107 0.79 -0.5
2,551,338 + +0.6
2,551,342 + +0.4
2,551,343 - +1.1
2,551,466 - +2.3
2,551,513 + -1.2
2,551,514 - -3.4
2,551,544 - -1.3
2,551,578 + -0.2
2,551,578 + -3.2
2,551,579 - +0.3
2,551,579 - -2.0
2,551,579 - +1.0
2,551,617 + +0.8
2,551,618 - +0.4
2,551,619 + -2.2
2,551,619 + +0.3
2,551,619 + -1.2
2,551,620 - +1.2
2,551,620 - +0.3
2,551,620 - +0.0
2,551,620 - +0.3
2,551,620 - +0.8
2,551,620 - -0.2
2,551,643 - Sama_2108 0.12 -0.6
2,551,673 - Sama_2108 0.16 -1.0
2,551,673 - Sama_2108 0.16 -0.2
2,551,673 - Sama_2108 0.16 -1.5
2,551,692 + Sama_2108 0.19 +1.5
2,551,724 - Sama_2108 0.23 -2.9
2,551,826 - Sama_2108 0.38 -0.2
2,551,836 + Sama_2108 0.40 -2.0
2,551,836 + Sama_2108 0.40 +0.3
2,551,836 + Sama_2108 0.40 +1.5
2,551,850 - Sama_2108 0.42 -2.1
2,551,869 + Sama_2108 0.44 -1.4
2,551,869 + Sama_2108 0.44 -1.7
2,551,869 + Sama_2108 0.44 +0.8
2,551,870 - Sama_2108 0.45 +1.6
2,551,870 - Sama_2108 0.45 -0.3
2,551,870 - Sama_2108 0.45 +3.4
2,551,870 - Sama_2108 0.45 +2.4
2,551,870 - Sama_2108 0.45 -1.0
2,551,883 + Sama_2108 0.47 -0.7
2,551,899 + Sama_2108 0.49 -2.3
2,551,900 - Sama_2108 0.49 -1.5
2,551,942 - Sama_2108 0.55 +2.4
2,551,968 - Sama_2108 0.59 -0.1
2,552,006 - Sama_2108 0.64 -2.6
2,552,034 - Sama_2108 0.68 +0.2
2,552,034 - Sama_2108 0.68 -0.7
2,552,034 - Sama_2108 0.68 +0.6
2,552,087 + Sama_2108 0.76 -1.5
2,552,152 + Sama_2108 0.86 -0.2
2,552,152 + Sama_2108 0.86 -2.2
2,552,153 - Sama_2108 0.86 -3.7
2,552,177 + Sama_2108 0.89 +0.8
2,552,177 + Sama_2108 0.89 +0.0
2,552,177 + Sama_2108 0.89 -0.7
2,552,178 - Sama_2108 0.89 +0.7
2,552,178 - Sama_2108 0.89 +0.6
2,552,178 - Sama_2108 0.89 -1.5
2,552,178 - Sama_2108 0.89 -0.9
2,552,178 - Sama_2108 0.89 -2.5
2,552,178 - Sama_2108 0.89 -1.1
2,552,180 + Sama_2108 0.90 -0.7
2,552,222 - +0.1
2,552,277 + +0.6
2,552,277 + +1.2
2,552,277 + -0.2
2,552,278 - +0.3
2,552,278 - +1.0
2,552,283 + -0.6
2,552,324 - -1.5
2,552,355 + Sama_2109 0.14 +0.2
2,552,356 - Sama_2109 0.14 -2.0
2,552,423 + Sama_2109 0.28 +1.2
2,552,423 + Sama_2109 0.28 -0.3
2,552,424 - Sama_2109 0.28 +0.8
2,552,424 - Sama_2109 0.28 +2.8
2,552,424 - Sama_2109 0.28 -0.0
2,552,485 + Sama_2109 0.41 +0.3
2,552,486 - Sama_2109 0.41 -1.2
2,552,486 - Sama_2109 0.41 -0.5
2,552,486 - Sama_2109 0.41 -1.7
2,552,489 + Sama_2109 0.42 +1.4
2,552,489 + Sama_2109 0.42 +0.6
2,552,489 + Sama_2109 0.42 -0.2
2,552,490 - Sama_2109 0.42 +2.0
2,552,490 - Sama_2109 0.42 +1.5
2,552,490 - Sama_2109 0.42 +0.8
2,552,515 - Sama_2109 0.47 +0.1
2,552,523 + Sama_2109 0.49 -0.2
2,552,523 + Sama_2109 0.49 -0.7
2,552,523 + Sama_2109 0.49 +1.3
2,552,587 - Sama_2109 0.62 +1.4
2,552,665 - Sama_2109 0.79 -2.5
2,552,665 - Sama_2109 0.79 -1.3
2,552,765 + +0.3
2,552,765 + +1.0
2,552,765 + -0.5
2,552,776 - +1.0
2,552,807 + +0.6
2,552,807 + -1.2
2,552,808 - -2.0
2,552,836 + +0.7
2,552,836 + -1.7
2,552,936 + Sama_2110 0.45 -1.0
2,552,936 + Sama_2110 0.45 -1.1
2,552,936 + Sama_2110 0.45 +3.0
2,552,936 + Sama_2110 0.45 -0.5
2,552,936 + Sama_2110 0.45 +0.4
2,552,936 + Sama_2110 0.45 +1.9
2,552,936 + Sama_2110 0.45 -1.9
2,552,936 + Sama_2110 0.45 +0.6
2,552,936 + Sama_2110 0.45 +0.9
2,552,936 + Sama_2110 0.45 -0.3
2,552,936 + Sama_2110 0.45 -0.2
2,552,937 - Sama_2110 0.46 +0.4
2,552,937 - Sama_2110 0.46 +1.0
2,552,937 - Sama_2110 0.46 -0.4
2,552,937 - Sama_2110 0.46 -1.5
2,552,998 + Sama_2110 0.74 -0.0
2,552,999 - Sama_2110 0.74 -1.2
2,553,004 + Sama_2110 0.76 -0.5
2,553,004 + Sama_2110 0.76 -0.7
2,553,005 - Sama_2110 0.77 -1.2
2,553,084 + -1.7
2,553,085 - +0.3
2,553,085 - -1.2
2,553,091 + -0.5
2,553,106 + +1.2
2,553,106 + -0.2
2,553,106 + +2.5
2,553,107 - -1.0
2,553,123 + -1.7
2,553,161 + +0.3
2,553,161 + -2.5
2,553,161 + -0.4
2,553,178 + -0.5

Or see this region's nucleotide sequence