Strain Fitness in Shewanella amazonensis SB2B around Sama_2108

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
2,550,670	+		Sama_2107	0.25	+0.8
2,550,689	+		Sama_2107	0.26	-2.0
2,550,689	+		Sama_2107	0.26	-3.0
2,550,690	-		Sama_2107	0.27	-0.2
2,550,694	+		Sama_2107	0.27	+1.2
2,550,695	-		Sama_2107	0.27	+1.4
2,550,712	+		Sama_2107	0.29	+2.3
2,550,712	+		Sama_2107	0.29	+0.6
2,550,712	+		Sama_2107	0.29	+1.6
2,550,713	-		Sama_2107	0.29	-0.2
2,550,713	-		Sama_2107	0.29	-0.2
2,550,713	-		Sama_2107	0.29	+1.3
2,550,747	+		Sama_2107	0.32	-1.2
2,550,748	-		Sama_2107	0.32	+0.5
2,550,827	+		Sama_2107	0.40	+0.4
2,550,848	+		Sama_2107	0.42	-1.3
2,550,854	-		Sama_2107	0.43	+0.8
2,550,882	+		Sama_2107	0.45	-2.3
2,550,882	+		Sama_2107	0.45	-1.5
2,550,883	-		Sama_2107	0.46	-0.5
2,550,968	-		Sama_2107	0.54	-1.5
2,550,968	-		Sama_2107	0.54	-1.2
2,550,968	-		Sama_2107	0.54	+1.1
2,550,980	+		Sama_2107	0.55	+1.4
2,550,981	-		Sama_2107	0.55	-2.3
2,550,981	-		Sama_2107	0.55	+1.3
2,550,981	-		Sama_2107	0.55	-0.7
2,550,986	+		Sama_2107	0.56	-0.7
2,550,986	+		Sama_2107	0.56	+0.8
2,550,987	-		Sama_2107	0.56	+1.6
2,551,027	-		Sama_2107	0.60	+2.8
2,551,027	-		Sama_2107	0.60	-0.4
2,551,027	-		Sama_2107	0.60	+1.6
2,551,064	-		Sama_2107	0.64	+0.3
2,551,064	-		Sama_2107	0.64	-3.1
2,551,080	+		Sama_2107	0.65	-0.2
2,551,080	+		Sama_2107	0.65	+0.1
2,551,081	-		Sama_2107	0.65	+0.5
2,551,081	-		Sama_2107	0.65	+1.0
2,551,102	+		Sama_2107	0.67	+1.4
2,551,102	+		Sama_2107	0.67	-0.7
2,551,103	-		Sama_2107	0.67	+0.3
2,551,164	+		Sama_2107	0.73	-0.2
2,551,164	+		Sama_2107	0.73	-0.2
2,551,164	+		Sama_2107	0.73	-1.1
2,551,164	+		Sama_2107	0.73	+2.7
2,551,164	+		Sama_2107	0.73	+1.1
2,551,164	+		Sama_2107	0.73	-1.4
2,551,164	+		Sama_2107	0.73	-0.3
2,551,164	+		Sama_2107	0.73	+0.2
2,551,164	+		Sama_2107	0.73	+3.0
2,551,164	+		Sama_2107	0.73	+0.8
2,551,164	+		Sama_2107	0.73	-2.0
2,551,165	-		Sama_2107	0.73	-1.0
2,551,165	-		Sama_2107	0.73	+1.1
2,551,165	-		Sama_2107	0.73	+0.1
2,551,165	-		Sama_2107	0.73	-1.3
2,551,165	-		Sama_2107	0.73	-1.5
2,551,165	-		Sama_2107	0.73	+1.0
2,551,165	-		Sama_2107	0.73	+0.8
2,551,165	-		Sama_2107	0.73	-2.7
2,551,165	-		Sama_2107	0.73	+1.3
2,551,165	-		Sama_2107	0.73	+1.0
2,551,165	-		Sama_2107	0.73	+2.5
2,551,165	-		Sama_2107	0.73	-0.8
2,551,165	-		Sama_2107	0.73	-0.2
2,551,165	-		Sama_2107	0.73	+2.2
2,551,187	+		Sama_2107	0.76	+2.4
2,551,224	+		Sama_2107	0.79	-1.5
2,551,224	+		Sama_2107	0.79	-0.7
2,551,224	+		Sama_2107	0.79	-0.6
2,551,224	+		Sama_2107	0.79	-1.5
2,551,224	+		Sama_2107	0.79	+0.0
2,551,224	+		Sama_2107	0.79	-1.6
2,551,224	+		Sama_2107	0.79	-1.2
2,551,225	-		Sama_2107	0.79	-0.4
2,551,225	-		Sama_2107	0.79	-0.9
2,551,225	-		Sama_2107	0.79	+1.0
2,551,225	-		Sama_2107	0.79	-1.0
2,551,225	-		Sama_2107	0.79	+0.8
2,551,225	-		Sama_2107	0.79	-0.7
2,551,225	-		Sama_2107	0.79	-0.5
2,551,338	+				+0.6
2,551,342	+				+0.4
2,551,343	-				+1.1
2,551,466	-				+2.3
2,551,513	+				-1.2
2,551,514	-				-3.4
2,551,544	-				-1.3
2,551,578	+				-0.2
2,551,578	+				-3.2
2,551,579	-				+0.3
2,551,579	-				-2.0
2,551,579	-				+1.0
2,551,617	+				+0.8
2,551,618	-				+0.4
2,551,619	+				-2.2
2,551,619	+				+0.3
2,551,619	+				-1.2
2,551,620	-				+1.2
2,551,620	-				+0.3
2,551,620	-				+0.0
2,551,620	-				+0.3
2,551,620	-				+0.8
2,551,620	-				-0.2
2,551,643	-		Sama_2108	0.12	-0.6
2,551,673	-		Sama_2108	0.16	-1.0
2,551,673	-		Sama_2108	0.16	-0.2
2,551,673	-		Sama_2108	0.16	-1.5
2,551,692	+		Sama_2108	0.19	+1.5
2,551,724	-		Sama_2108	0.23	-2.9
2,551,826	-		Sama_2108	0.38	-0.2
2,551,836	+		Sama_2108	0.40	-2.0
2,551,836	+		Sama_2108	0.40	+0.3
2,551,836	+		Sama_2108	0.40	+1.5
2,551,850	-		Sama_2108	0.42	-2.1
2,551,869	+		Sama_2108	0.44	-1.4
2,551,869	+		Sama_2108	0.44	-1.7
2,551,869	+		Sama_2108	0.44	+0.8
2,551,870	-		Sama_2108	0.45	+1.6
2,551,870	-		Sama_2108	0.45	-0.3
2,551,870	-		Sama_2108	0.45	+3.4
2,551,870	-		Sama_2108	0.45	+2.4
2,551,870	-		Sama_2108	0.45	-1.0
2,551,883	+		Sama_2108	0.47	-0.7
2,551,899	+		Sama_2108	0.49	-2.3
2,551,900	-		Sama_2108	0.49	-1.5
2,551,942	-		Sama_2108	0.55	+2.4
2,551,968	-		Sama_2108	0.59	-0.1
2,552,006	-		Sama_2108	0.64	-2.6
2,552,034	-		Sama_2108	0.68	+0.2
2,552,034	-		Sama_2108	0.68	-0.7
2,552,034	-		Sama_2108	0.68	+0.6
2,552,087	+		Sama_2108	0.76	-1.5
2,552,152	+		Sama_2108	0.86	-0.2
2,552,152	+		Sama_2108	0.86	-2.2
2,552,153	-		Sama_2108	0.86	-3.7
2,552,177	+		Sama_2108	0.89	+0.8
2,552,177	+		Sama_2108	0.89	+0.0
2,552,177	+		Sama_2108	0.89	-0.7
2,552,178	-		Sama_2108	0.89	+0.7
2,552,178	-		Sama_2108	0.89	+0.6
2,552,178	-		Sama_2108	0.89	-1.5
2,552,178	-		Sama_2108	0.89	-0.9
2,552,178	-		Sama_2108	0.89	-2.5
2,552,178	-		Sama_2108	0.89	-1.1
2,552,180	+		Sama_2108	0.90	-0.7
2,552,222	-				+0.1
2,552,277	+				+0.6
2,552,277	+				+1.2
2,552,277	+				-0.2
2,552,278	-				+0.3
2,552,278	-				+1.0
2,552,283	+				-0.6
2,552,324	-				-1.5
2,552,355	+		Sama_2109	0.14	+0.2
2,552,356	-		Sama_2109	0.14	-2.0
2,552,423	+		Sama_2109	0.28	+1.2
2,552,423	+		Sama_2109	0.28	-0.3
2,552,424	-		Sama_2109	0.28	+0.8
2,552,424	-		Sama_2109	0.28	+2.8
2,552,424	-		Sama_2109	0.28	-0.0
2,552,485	+		Sama_2109	0.41	+0.3
2,552,486	-		Sama_2109	0.41	-1.2
2,552,486	-		Sama_2109	0.41	-0.5
2,552,486	-		Sama_2109	0.41	-1.7
2,552,489	+		Sama_2109	0.42	+1.4
2,552,489	+		Sama_2109	0.42	+0.6
2,552,489	+		Sama_2109	0.42	-0.2
2,552,490	-		Sama_2109	0.42	+2.0
2,552,490	-		Sama_2109	0.42	+1.5
2,552,490	-		Sama_2109	0.42	+0.8
2,552,515	-		Sama_2109	0.47	+0.1
2,552,523	+		Sama_2109	0.49	-0.2
2,552,523	+		Sama_2109	0.49	-0.7
2,552,523	+		Sama_2109	0.49	+1.3
2,552,587	-		Sama_2109	0.62	+1.4
2,552,665	-		Sama_2109	0.79	-2.5
2,552,665	-		Sama_2109	0.79	-1.3
2,552,765	+				+0.3
2,552,765	+				+1.0
2,552,765	+				-0.5
2,552,776	-				+1.0
2,552,807	+				+0.6
2,552,807	+				-1.2
2,552,808	-				-2.0
2,552,836	+				+0.7
2,552,836	+				-1.7
2,552,936	+		Sama_2110	0.45	-1.0
2,552,936	+		Sama_2110	0.45	-1.1
2,552,936	+		Sama_2110	0.45	+3.0
2,552,936	+		Sama_2110	0.45	-0.5
2,552,936	+		Sama_2110	0.45	+0.4
2,552,936	+		Sama_2110	0.45	+1.9
2,552,936	+		Sama_2110	0.45	-1.9
2,552,936	+		Sama_2110	0.45	+0.6
2,552,936	+		Sama_2110	0.45	+0.9
2,552,936	+		Sama_2110	0.45	-0.3
2,552,936	+		Sama_2110	0.45	-0.2
2,552,937	-		Sama_2110	0.46	+0.4
2,552,937	-		Sama_2110	0.46	+1.0
2,552,937	-		Sama_2110	0.46	-0.4
2,552,937	-		Sama_2110	0.46	-1.5
2,552,998	+		Sama_2110	0.74	-0.0
2,552,999	-		Sama_2110	0.74	-1.2
2,553,004	+		Sama_2110	0.76	-0.5
2,553,004	+		Sama_2110	0.76	-0.7
2,553,005	-		Sama_2110	0.77	-1.2
2,553,084	+				-1.7
2,553,085	-				+0.3
2,553,085	-				-1.2
2,553,091	+				-0.5
2,553,106	+				+1.2
2,553,106	+				-0.2
2,553,106	+				+2.5
2,553,107	-				-1.0
2,553,123	+				-1.7
2,553,161	+				+0.3
2,553,161	+				-2.5
2,553,161	+				-0.4
2,553,178	+				-0.5