Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1960 and Sama_1961 are separated by 0 nucleotides Sama_1961 and Sama_1962 are separated by 278 nucleotides Sama_1962 and Sama_1963 are separated by 73 nucleotides
Sama_1960: Sama_1960 - cold-shock DNA-binding domain-containing protein (RefSeq), at 2,389,189 to 2,389,401
_1960
Sama_1961: Sama_1961 - pyridoxamine 5'-phosphate oxidase (RefSeq), at 2,389,402 to 2,390,040
_1961
Sama_1962: Sama_1962 - adenosylmethionine decarboxylase (RefSeq), at 2,390,319 to 2,391,248
_1962
Sama_1963: Sama_1963 - arginine decarboxylase (RefSeq), at 2,391,322 to 2,393,232
_1963
Position (kb)
2390
2391
2392 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2390.063 kb on - strand at 2390.175 kb on - strand at 2390.175 kb on - strand at 2390.188 kb on - strand at 2390.193 kb on + strand at 2390.193 kb on + strand at 2390.193 kb on + strand at 2390.194 kb on - strand at 2390.194 kb on - strand at 2390.194 kb on - strand at 2390.216 kb on + strand at 2390.217 kb on - strand at 2390.239 kb on - strand at 2390.239 kb on - strand at 2390.268 kb on + strand at 2390.269 kb on - strand at 2390.321 kb on - strand at 2390.321 kb on - strand at 2390.321 kb on - strand at 2390.362 kb on + strand at 2390.381 kb on + strand at 2390.382 kb on - strand at 2390.382 kb on - strand at 2390.382 kb on - strand at 2390.382 kb on - strand at 2390.382 kb on - strand at 2390.382 kb on - strand at 2390.382 kb on - strand at 2390.382 kb on - strand at 2390.496 kb on - strand, within Sama_1962 at 2390.563 kb on + strand, within Sama_1962 at 2390.564 kb on - strand, within Sama_1962 at 2390.564 kb on - strand, within Sama_1962 at 2390.564 kb on - strand, within Sama_1962 at 2390.564 kb on - strand, within Sama_1962 at 2390.564 kb on - strand, within Sama_1962 at 2390.585 kb on + strand, within Sama_1962 at 2390.586 kb on - strand, within Sama_1962 at 2390.586 kb on - strand, within Sama_1962 at 2390.586 kb on - strand, within Sama_1962 at 2390.589 kb on - strand, within Sama_1962 at 2390.627 kb on + strand, within Sama_1962 at 2390.628 kb on - strand, within Sama_1962 at 2390.628 kb on - strand, within Sama_1962 at 2390.628 kb on - strand, within Sama_1962 at 2390.628 kb on - strand, within Sama_1962 at 2390.632 kb on + strand, within Sama_1962 at 2390.633 kb on - strand, within Sama_1962 at 2390.665 kb on - strand, within Sama_1962 at 2390.740 kb on + strand, within Sama_1962 at 2390.767 kb on + strand, within Sama_1962 at 2390.768 kb on - strand, within Sama_1962 at 2390.768 kb on - strand, within Sama_1962 at 2390.768 kb on - strand, within Sama_1962 at 2390.786 kb on + strand, within Sama_1962 at 2390.787 kb on - strand, within Sama_1962 at 2390.787 kb on - strand, within Sama_1962 at 2390.810 kb on - strand, within Sama_1962 at 2390.834 kb on - strand, within Sama_1962 at 2390.959 kb on + strand, within Sama_1962 at 2390.960 kb on - strand, within Sama_1962 at 2390.960 kb on - strand, within Sama_1962 at 2391.000 kb on - strand, within Sama_1962 at 2391.000 kb on - strand, within Sama_1962 at 2391.095 kb on - strand, within Sama_1962 at 2391.095 kb on - strand, within Sama_1962 at 2391.210 kb on + strand at 2391.211 kb on - strand at 2391.211 kb on - strand at 2391.257 kb on - strand at 2391.257 kb on - strand at 2391.277 kb on + strand at 2391.278 kb on - strand at 2391.313 kb on + strand at 2391.314 kb on - strand at 2391.314 kb on - strand at 2391.317 kb on - strand at 2391.324 kb on - strand at 2391.339 kb on - strand at 2391.339 kb on - strand at 2391.339 kb on - strand at 2391.345 kb on - strand at 2391.345 kb on - strand at 2391.426 kb on - strand at 2391.462 kb on - strand at 2391.470 kb on - strand at 2391.484 kb on - strand at 2391.484 kb on - strand at 2391.496 kb on + strand at 2391.497 kb on - strand at 2391.553 kb on - strand, within Sama_1963 at 2391.553 kb on - strand, within Sama_1963 at 2391.624 kb on - strand, within Sama_1963 at 2391.670 kb on - strand, within Sama_1963 at 2391.683 kb on - strand, within Sama_1963 at 2391.683 kb on - strand, within Sama_1963 at 2391.683 kb on - strand, within Sama_1963 at 2391.686 kb on + strand, within Sama_1963 at 2391.687 kb on - strand, within Sama_1963 at 2391.687 kb on - strand, within Sama_1963 at 2391.701 kb on - strand, within Sama_1963 at 2391.834 kb on + strand, within Sama_1963 at 2391.942 kb on + strand, within Sama_1963 at 2391.943 kb on - strand, within Sama_1963 at 2391.943 kb on - strand, within Sama_1963 at 2391.943 kb on - strand, within Sama_1963 at 2392.151 kb on + strand, within Sama_1963 at 2392.152 kb on - strand, within Sama_1963 at 2392.152 kb on - strand, within Sama_1963 at 2392.152 kb on - strand, within Sama_1963 at 2392.225 kb on - strand, within Sama_1963
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 2,390,063 - -0.9 2,390,175 - +2.3 2,390,175 - +0.0 2,390,188 - -1.1 2,390,193 + +0.9 2,390,193 + +2.0 2,390,193 + -0.4 2,390,194 - -0.8 2,390,194 - -0.9 2,390,194 - +0.1 2,390,216 + +0.7 2,390,217 - +0.8 2,390,239 - +0.9 2,390,239 - -1.0 2,390,268 + -1.3 2,390,269 - -0.3 2,390,321 - -1.9 2,390,321 - -0.9 2,390,321 - +0.2 2,390,362 + -1.1 2,390,381 + -1.6 2,390,382 - -3.2 2,390,382 - -2.0 2,390,382 - -3.5 2,390,382 - -2.3 2,390,382 - +0.5 2,390,382 - -3.5 2,390,382 - -3.7 2,390,382 - -2.3 2,390,496 - Sama_1962 0.19 -1.5 2,390,563 + Sama_1962 0.26 -1.3 2,390,564 - Sama_1962 0.26 -0.9 2,390,564 - Sama_1962 0.26 -2.6 2,390,564 - Sama_1962 0.26 -3.7 2,390,564 - Sama_1962 0.26 -2.6 2,390,564 - Sama_1962 0.26 -2.1 2,390,585 + Sama_1962 0.29 -2.8 2,390,586 - Sama_1962 0.29 -1.1 2,390,586 - Sama_1962 0.29 -0.9 2,390,586 - Sama_1962 0.29 -2.5 2,390,589 - Sama_1962 0.29 -3.5 2,390,627 + Sama_1962 0.33 +0.1 2,390,628 - Sama_1962 0.33 -2.4 2,390,628 - Sama_1962 0.33 -0.5 2,390,628 - Sama_1962 0.33 -2.5 2,390,628 - Sama_1962 0.33 -0.8 2,390,632 + Sama_1962 0.34 -1.6 2,390,633 - Sama_1962 0.34 -2.5 2,390,665 - Sama_1962 0.37 +0.1 2,390,740 + Sama_1962 0.45 -2.1 2,390,767 + Sama_1962 0.48 -2.1 2,390,768 - Sama_1962 0.48 -1.9 2,390,768 - Sama_1962 0.48 +0.1 2,390,768 - Sama_1962 0.48 +0.2 2,390,786 + Sama_1962 0.50 +0.7 2,390,787 - Sama_1962 0.50 -0.7 2,390,787 - Sama_1962 0.50 -3.7 2,390,810 - Sama_1962 0.53 +1.7 2,390,834 - Sama_1962 0.55 -1.3 2,390,959 + Sama_1962 0.69 -1.9 2,390,960 - Sama_1962 0.69 +1.5 2,390,960 - Sama_1962 0.69 -0.5 2,391,000 - Sama_1962 0.73 -0.9 2,391,000 - Sama_1962 0.73 -0.9 2,391,095 - Sama_1962 0.83 -1.9 2,391,095 - Sama_1962 0.83 -1.6 2,391,210 + -2.3 2,391,211 - -0.5 2,391,211 - -3.5 2,391,257 - -1.3 2,391,257 - -2.9 2,391,277 + +0.3 2,391,278 - -3.1 2,391,313 + -2.8 2,391,314 - -2.5 2,391,314 - -1.3 2,391,317 - +0.5 2,391,324 - -2.2 2,391,339 - -2.3 2,391,339 - -1.3 2,391,339 - -1.3 2,391,345 - -1.1 2,391,345 - -2.8 2,391,426 - -1.3 2,391,462 - -3.9 2,391,470 - -1.9 2,391,484 - -1.6 2,391,484 - +1.2 2,391,496 + -1.6 2,391,497 - -1.6 2,391,553 - Sama_1963 0.12 -2.1 2,391,553 - Sama_1963 0.12 -1.6 2,391,624 - Sama_1963 0.16 -1.8 2,391,670 - Sama_1963 0.18 -0.9 2,391,683 - Sama_1963 0.19 -0.9 2,391,683 - Sama_1963 0.19 -3.9 2,391,683 - Sama_1963 0.19 -2.3 2,391,686 + Sama_1963 0.19 -3.1 2,391,687 - Sama_1963 0.19 -3.8 2,391,687 - Sama_1963 0.19 -0.6 2,391,701 - Sama_1963 0.20 -2.3 2,391,834 + Sama_1963 0.27 -1.6 2,391,942 + Sama_1963 0.32 -1.6 2,391,943 - Sama_1963 0.32 -2.6 2,391,943 - Sama_1963 0.32 -1.3 2,391,943 - Sama_1963 0.32 -3.8 2,392,151 + Sama_1963 0.43 -1.9 2,392,152 - Sama_1963 0.43 -2.0 2,392,152 - Sama_1963 0.43 -0.2 2,392,152 - Sama_1963 0.43 -0.3 2,392,225 - Sama_1963 0.47 +0.4
Or see this region's nucleotide sequence