Strain Fitness in Shewanella amazonensis SB2B around Sama_1565

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
1,907,027	+		Sama_1564	0.74	+0.6
1,907,027	+		Sama_1564	0.74	-1.2
1,907,027	+		Sama_1564	0.74	+0.6
1,907,028	-		Sama_1564	0.74	+0.6
1,907,028	-		Sama_1564	0.74	+3.6
1,907,028	-		Sama_1564	0.74	-1.4
1,907,028	-		Sama_1564	0.74	+0.6
1,907,028	-		Sama_1564	0.74	+0.6
1,907,087	+		Sama_1564	0.77	+0.9
1,907,162	-		Sama_1564	0.80	-0.4
1,907,162	-		Sama_1564	0.80	+1.5
1,907,162	-		Sama_1564	0.80	-0.2
1,907,216	+		Sama_1564	0.83	-3.7
1,907,217	-		Sama_1564	0.83	+0.9
1,907,217	-		Sama_1564	0.83	+0.8
1,907,352	-		Sama_1564	0.89	-0.2
1,907,352	-		Sama_1564	0.89	-2.7
1,907,363	+		Sama_1564	0.89	-0.9
1,907,405	+				+0.2
1,907,406	-				+0.1
1,907,409	+				+0.5
1,907,409	+				+0.2
1,907,409	+				+0.9
1,907,409	+				-1.4
1,907,409	+				+2.5
1,907,409	+				+0.3
1,907,409	+				-1.8
1,907,409	+				+0.6
1,907,409	+				-0.4
1,907,409	+				+1.2
1,907,410	-				+1.8
1,907,410	-				-1.4
1,907,410	-				-0.9
1,907,410	-				+1.5
1,907,410	-				-1.2
1,907,410	-				+1.3
1,907,410	-				+1.2
1,907,414	+				+0.5
1,907,414	+				-2.2
1,907,415	-				-0.7
1,907,643	+				-2.4
1,907,643	+				+0.4
1,907,643	+				-1.5
1,907,644	-				-0.2
1,907,644	-				-2.9
1,907,644	-				-1.7
1,907,663	-				+1.9
1,907,669	+				-3.3
1,907,674	+				-1.9
1,907,674	+				+0.9
1,907,675	-				+0.2
1,907,719	-				+0.5
1,907,719	-				+2.2
1,907,763	+				-0.7
1,907,764	-				-0.7
1,907,777	+				+0.4
1,907,777	+				-0.6
1,907,777	+				-0.6
1,907,777	+				+0.6
1,907,778	-				-2.9
1,907,778	-				-0.1
1,907,786	-				+0.2
1,907,822	+				+0.3
1,907,822	+				+0.1
1,907,822	+				-0.4
1,907,823	-				-1.0
1,907,823	-				-0.2
1,907,823	-				-1.5
1,907,942	+				-0.0
1,908,105	-		Sama_1565	0.14	+0.3
1,908,128	+		Sama_1565	0.16	-0.9
1,908,187	-		Sama_1565	0.20	-0.1
1,908,368	+		Sama_1565	0.31	+0.8
1,908,413	+		Sama_1565	0.34	+0.5
1,908,447	+		Sama_1565	0.36	+0.6
1,908,447	+		Sama_1565	0.36	-1.2
1,908,498	+		Sama_1565	0.39	-2.4
1,908,499	-		Sama_1565	0.39	+1.5
1,908,499	-		Sama_1565	0.39	+2.9
1,908,519	-		Sama_1565	0.41	+0.6
1,908,519	-		Sama_1565	0.41	-0.4
1,908,519	-		Sama_1565	0.41	+0.1
1,908,537	+		Sama_1565	0.42	-0.9
1,908,618	-		Sama_1565	0.47	+0.2
1,908,629	-		Sama_1565	0.48	+0.9
1,908,633	+		Sama_1565	0.48	-0.9
1,908,633	+		Sama_1565	0.48	+2.0
1,908,633	+		Sama_1565	0.48	+0.6
1,908,633	+		Sama_1565	0.48	-2.8
1,908,712	+		Sama_1565	0.53	+1.1
1,908,713	-		Sama_1565	0.53	+1.0
1,908,849	+		Sama_1565	0.62	-0.7
1,908,960	+		Sama_1565	0.69	+1.0
1,908,960	+		Sama_1565	0.69	+2.5
1,908,960	+		Sama_1565	0.69	-0.1
1,908,960	+		Sama_1565	0.69	+1.1
1,908,961	-		Sama_1565	0.69	-0.9
1,908,961	-		Sama_1565	0.69	+0.6
1,909,001	+		Sama_1565	0.71	-2.7
1,909,001	+		Sama_1565	0.71	-0.5
1,909,025	+		Sama_1565	0.73	+1.4
1,909,025	+		Sama_1565	0.73	-1.1
1,909,025	+		Sama_1565	0.73	-2.2
1,909,026	-		Sama_1565	0.73	-1.9
1,909,026	-		Sama_1565	0.73	-0.2
1,909,026	-		Sama_1565	0.73	+0.8
1,909,026	-		Sama_1565	0.73	-1.7
1,909,026	-		Sama_1565	0.73	+2.6
1,909,026	-		Sama_1565	0.73	-0.9
1,909,026	-		Sama_1565	0.73	-0.7
1,909,031	+		Sama_1565	0.73	+1.0
1,909,109	+		Sama_1565	0.78	+0.8
1,909,170	-		Sama_1565	0.82	+0.3
1,909,171	+		Sama_1565	0.82	-2.7
1,909,171	+		Sama_1565	0.82	+0.1
1,909,171	+		Sama_1565	0.82	-3.2
1,909,171	+		Sama_1565	0.82	-1.4
1,909,353	+				+0.8
1,909,353	+				-0.2
1,909,353	+				-0.9
1,909,354	-				-0.9
1,909,354	-				-0.8
1,909,379	+				-0.9
1,909,397	+				+1.2
1,909,398	-				+0.5
1,909,417	-				-0.6
1,909,417	-				+0.6
1,909,452	+				-1.9
1,909,452	+				-1.5
1,909,453	-				-0.0
1,909,456	-				-0.0
1,909,480	-				-1.7
1,909,506	+				+0.4
1,909,551	+				+1.4
1,909,552	-				-1.9
1,909,552	-				+0.1
1,909,552	-				+3.4
1,909,604	+				-0.8
1,909,604	+				-3.3
1,909,604	+				-0.1
1,909,604	+				-0.2
1,909,604	+				+1.4
1,909,604	+				-2.9
1,909,604	+				+0.7
1,909,605	-				-0.3
1,909,605	-				-2.8
1,909,605	-				-3.0
1,909,739	+		Sama_1566	0.10	+0.7
1,909,809	+		Sama_1566	0.14	-1.3
1,909,809	+		Sama_1566	0.14	+1.3
1,909,810	-		Sama_1566	0.14	-1.7
1,909,810	-		Sama_1566	0.14	+0.7
1,909,810	-		Sama_1566	0.14	+1.9
1,909,828	-		Sama_1566	0.15	-0.1
1,909,828	-		Sama_1566	0.15	-2.5
1,909,828	-		Sama_1566	0.15	-0.8
1,909,828	-		Sama_1566	0.15	-1.9
1,909,837	-		Sama_1566	0.16	-0.5
1,909,837	-		Sama_1566	0.16	-1.7
1,909,837	-		Sama_1566	0.16	-0.7
1,909,837	-		Sama_1566	0.16	-0.6
1,909,867	-		Sama_1566	0.18	+2.1
1,909,891	+		Sama_1566	0.19	-1.3
1,909,891	+		Sama_1566	0.19	-2.7
1,909,892	-		Sama_1566	0.19	-0.2
1,910,055	-		Sama_1566	0.28	-0.9
1,910,072	+		Sama_1566	0.29	+0.2
1,910,072	+		Sama_1566	0.29	-3.0
1,910,072	+		Sama_1566	0.29	+0.7
1,910,072	+		Sama_1566	0.29	-1.7
1,910,072	+		Sama_1566	0.29	+2.7
1,910,072	+		Sama_1566	0.29	-1.3
1,910,073	-		Sama_1566	0.29	-2.7
1,910,073	-		Sama_1566	0.29	-0.3
1,910,073	-		Sama_1566	0.29	+1.4
1,910,073	-		Sama_1566	0.29	+1.3
1,910,073	-		Sama_1566	0.29	-2.8
1,910,073	-		Sama_1566	0.29	-0.6
1,910,073	-		Sama_1566	0.29	-0.4
1,910,073	-		Sama_1566	0.29	+0.3
1,910,114	+		Sama_1566	0.32	-0.2
1,910,184	+		Sama_1566	0.35	+0.7
1,910,195	-		Sama_1566	0.36	+0.7
1,910,219	+		Sama_1566	0.37	-2.3
1,910,220	-		Sama_1566	0.38	+0.4
1,910,276	+		Sama_1566	0.41	-0.1
1,910,294	+		Sama_1566	0.42	-3.2
1,910,344	-		Sama_1566	0.45	-3.3