Strain Fitness in Shewanella amazonensis SB2B around Sama_1474

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
1,782,169	+				+1.3
1,782,217	+				-0.3
1,782,217	+				-1.2
1,782,282	-		Sama_1473	0.14	-0.2
1,782,299	+		Sama_1473	0.16	+0.4
1,782,299	+		Sama_1473	0.16	+0.4
1,782,309	+		Sama_1473	0.17	-1.9
1,782,310	-		Sama_1473	0.18	+0.4
1,782,310	-		Sama_1473	0.18	-1.1
1,782,310	-		Sama_1473	0.18	-2.1
1,782,310	-		Sama_1473	0.18	-1.0
1,782,320	+		Sama_1473	0.19	-0.4
1,782,328	+		Sama_1473	0.20	+2.4
1,782,329	-		Sama_1473	0.20	+1.0
1,782,329	-		Sama_1473	0.20	-0.1
1,782,343	-		Sama_1473	0.22	-1.0
1,782,343	-		Sama_1473	0.22	-1.2
1,782,343	-		Sama_1473	0.22	+0.9
1,782,343	-		Sama_1473	0.22	+2.2
1,782,343	-		Sama_1473	0.22	-1.0
1,782,394	+		Sama_1473	0.28	-2.0
1,782,394	+		Sama_1473	0.28	-0.3
1,782,395	-		Sama_1473	0.28	-2.9
1,782,402	-		Sama_1473	0.29	+0.7
1,782,403	+		Sama_1473	0.29	-0.1
1,782,403	+		Sama_1473	0.29	+1.0
1,782,404	-		Sama_1473	0.29	-1.9
1,782,404	-		Sama_1473	0.29	-0.2
1,782,423	+		Sama_1473	0.32	+0.7
1,782,423	+		Sama_1473	0.32	-0.3
1,782,424	-		Sama_1473	0.32	+0.2
1,782,424	-		Sama_1473	0.32	-1.6
1,782,426	-		Sama_1473	0.32	-2.6
1,782,490	+		Sama_1473	0.40	+1.3
1,782,491	-		Sama_1473	0.40	-2.1
1,782,491	-		Sama_1473	0.40	+1.6
1,782,491	-		Sama_1473	0.40	+0.1
1,782,707	+		Sama_1473	0.67	+2.0
1,782,708	-		Sama_1473	0.67	+1.4
1,782,740	-		Sama_1473	0.71	+1.3
1,782,750	+		Sama_1473	0.72	+1.3
1,782,751	-		Sama_1473	0.72	+1.2
1,782,751	-		Sama_1473	0.72	-0.5
1,782,751	-		Sama_1473	0.72	-0.2
1,782,779	-		Sama_1473	0.76	-0.3
1,782,810	-		Sama_1473	0.80	+2.4
1,782,842	+		Sama_1473	0.84	+0.2
1,782,842	+		Sama_1473	0.84	-0.1
1,782,842	+		Sama_1473	0.84	+0.7
1,782,856	+		Sama_1473	0.85	+0.1
1,782,856	+		Sama_1473	0.85	-0.5
1,782,856	+		Sama_1473	0.85	-0.3
1,782,857	-		Sama_1473	0.85	+0.7
1,782,857	-		Sama_1473	0.85	-2.2
1,782,925	+				+1.1
1,782,926	-				+0.4
1,782,930	+				-0.8
1,782,930	+				+0.2
1,782,930	+				-1.9
1,782,931	-				+1.3
1,782,931	-				+0.1
1,782,931	-				-2.8
1,782,931	-				-0.6
1,782,975	+				+0.9
1,782,975	+				-2.5
1,783,031	+				+0.1
1,783,031	+				-2.1
1,783,032	-				-3.0
1,783,032	-				+0.5
1,783,039	-				+1.3
1,783,103	+				-1.6
1,783,123	-				-0.1
1,783,155	-				-0.1
1,783,160	+				-0.0
1,783,168	+				-1.6
1,783,168	+				+1.3
1,783,169	-				-0.6
1,783,169	-				-1.3
1,783,169	-				-1.3
1,783,169	-				+2.8
1,783,169	-				+1.0
1,783,278	-				+0.4
1,783,364	+		Sama_1474	0.18	-1.3
1,783,365	-		Sama_1474	0.18	-0.1
1,783,489	+		Sama_1474	0.29	+0.7
1,783,489	+		Sama_1474	0.29	-3.2
1,783,489	+		Sama_1474	0.29	-0.8
1,783,566	+		Sama_1474	0.36	-3.3
1,783,620	-		Sama_1474	0.41	-0.7
1,783,620	-		Sama_1474	0.41	+0.3
1,783,689	+		Sama_1474	0.48	+0.6
1,783,689	+		Sama_1474	0.48	-1.2
1,783,689	+		Sama_1474	0.48	-0.5
1,783,689	+		Sama_1474	0.48	-0.5
1,783,690	-		Sama_1474	0.48	+0.1
1,783,690	-		Sama_1474	0.48	+0.6
1,783,690	-		Sama_1474	0.48	-1.2
1,783,690	-		Sama_1474	0.48	-1.3
1,783,692	-		Sama_1474	0.48	-0.3
1,783,692	-		Sama_1474	0.48	+1.8
1,783,813	+		Sama_1474	0.59	+1.4
1,783,813	+		Sama_1474	0.59	-0.9
1,783,814	-		Sama_1474	0.59	-0.8
1,783,814	-		Sama_1474	0.59	+0.7
1,783,825	+		Sama_1474	0.60	+1.2
1,783,845	+		Sama_1474	0.62	+0.7
1,783,846	-		Sama_1474	0.62	-1.1
1,783,846	-		Sama_1474	0.62	-0.9
1,783,888	+		Sama_1474	0.66	+0.6
1,783,889	-		Sama_1474	0.66	+0.7
1,783,889	-		Sama_1474	0.66	-0.5
1,783,889	-		Sama_1474	0.66	-0.5
1,783,900	+		Sama_1474	0.67	-0.4
1,783,901	-		Sama_1474	0.67	+0.9
1,783,941	-		Sama_1474	0.71	+0.6
1,783,949	+		Sama_1474	0.71	-0.6
1,784,027	+		Sama_1474	0.79	-0.7
1,784,028	-		Sama_1474	0.79	-1.6
1,784,037	-		Sama_1474	0.79	-2.4
1,784,171	+				-2.5
1,784,171	+				-1.3
1,784,171	+				+2.8
1,784,171	+				-1.6
1,784,172	-				-1.2
1,784,172	-				+0.8
1,784,172	-				-0.9
1,784,172	-				-0.9
1,784,185	+				+1.7
1,784,204	+				+0.6
1,784,259	-				-0.9
1,784,259	-				-1.6
1,784,269	+				-1.3
1,784,270	-				+0.4
1,784,309	+				+0.4
1,784,309	+				+0.3
1,784,310	-				+0.7
1,784,374	+		Sama_1475	0.12	-2.5
1,784,375	-		Sama_1475	0.12	+0.9
1,784,412	-		Sama_1475	0.15	+0.5
1,784,412	-		Sama_1475	0.15	-0.9
1,784,466	+		Sama_1475	0.21	+0.6
1,784,467	-		Sama_1475	0.21	-1.5
1,784,490	+		Sama_1475	0.23	-1.6
1,784,491	-		Sama_1475	0.23	+1.1
1,784,491	-		Sama_1475	0.23	+0.2
1,784,491	-		Sama_1475	0.23	+0.9
1,784,607	+		Sama_1475	0.34	+0.1
1,784,607	+		Sama_1475	0.34	-1.2
1,784,607	+		Sama_1475	0.34	+0.7
1,784,608	-		Sama_1475	0.34	-1.3
1,784,658	+		Sama_1475	0.39	+1.9
1,784,726	+		Sama_1475	0.45	-0.3
1,784,726	+		Sama_1475	0.45	-0.1
1,784,727	-		Sama_1475	0.46	-0.9
1,784,727	-		Sama_1475	0.46	-0.9
1,784,727	-		Sama_1475	0.46	+0.1
1,784,758	+		Sama_1475	0.49	+2.3
1,784,759	-		Sama_1475	0.49	-1.3
1,784,759	-		Sama_1475	0.49	+0.6
1,784,843	-		Sama_1475	0.57	-1.3
1,784,861	+		Sama_1475	0.58	-2.9
1,784,861	+		Sama_1475	0.58	-1.9
1,784,861	+		Sama_1475	0.58	-2.5
1,784,861	+		Sama_1475	0.58	-3.1
1,784,904	+		Sama_1475	0.62	-0.3
1,784,904	+		Sama_1475	0.62	+0.2
1,784,904	+		Sama_1475	0.62	+0.4
1,784,904	+		Sama_1475	0.62	-1.3
1,784,904	+		Sama_1475	0.62	+0.6
1,784,974	-		Sama_1475	0.69	-1.6
1,784,987	+		Sama_1475	0.70	-2.1
1,785,004	+		Sama_1475	0.72	-0.3
1,785,047	+		Sama_1475	0.76	-0.2
1,785,058	+		Sama_1475	0.77	+0.3
1,785,141	+		Sama_1475	0.85	-2.7
1,785,141	+		Sama_1475	0.85	-0.7
1,785,142	-		Sama_1475	0.85	-0.3
1,785,142	-		Sama_1475	0.85	-0.1
1,785,159	-		Sama_1475	0.87	+1.9
1,785,186	+		Sama_1475	0.89	+1.1
1,785,186	+		Sama_1475	0.89	-0.9
1,785,186	+		Sama_1475	0.89	+2.5
1,785,189	+		Sama_1475	0.90	-0.8
1,785,189	+		Sama_1475	0.90	+0.8
1,785,189	+		Sama_1475	0.90	-2.9
1,785,190	-		Sama_1475	0.90	-1.9
1,785,190	-		Sama_1475	0.90	+0.4
1,785,192	+				-0.9
1,785,192	+				+0.9
1,785,193	-				+0.1
1,785,193	-				+0.5
1,785,218	+				-0.5
1,785,245	+				+0.7
1,785,251	-				+1.4