Strain Fitness in Shewanella amazonensis SB2B around Sama_1436

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1435 and Sama_1436 are separated by 57 nucleotidesSama_1436 and Sama_1437 are separated by 7 nucleotides Sama_1435: Sama_1435 - NAD-dependent deacetylase (RefSeq), at 1,745,846 to 1,746,592 _1435 Sama_1436: Sama_1436 - hypothetical protein (RefSeq), at 1,746,650 to 1,747,036 _1436 Sama_1437: Sama_1437 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq), at 1,747,044 to 1,748,354 _1437 Position (kb) 1746 1747 1748Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1745.650 kb on + strandat 1745.650 kb on + strandat 1745.651 kb on - strandat 1745.683 kb on - strandat 1745.689 kb on + strandat 1745.689 kb on + strandat 1745.701 kb on + strandat 1745.702 kb on - strandat 1745.709 kb on + strandat 1745.721 kb on + strandat 1745.775 kb on - strandat 1745.775 kb on - strandat 1745.819 kb on + strandat 1745.827 kb on + strandat 1745.828 kb on - strandat 1745.828 kb on - strandat 1745.828 kb on - strandat 1745.828 kb on - strandat 1745.828 kb on - strandat 1745.830 kb on + strandat 1745.850 kb on - strandat 1745.850 kb on - strandat 1745.857 kb on + strandat 1745.857 kb on + strandat 1745.858 kb on - strandat 1745.859 kb on + strandat 1745.859 kb on + strandat 1745.859 kb on + strandat 1745.859 kb on + strandat 1745.859 kb on + strandat 1745.859 kb on + strandat 1745.859 kb on + strandat 1745.859 kb on + strandat 1745.859 kb on + strandat 1745.859 kb on + strandat 1745.860 kb on - strandat 1745.860 kb on - strandat 1745.860 kb on - strandat 1745.860 kb on - strandat 1745.860 kb on - strandat 1745.860 kb on - strandat 1745.860 kb on - strandat 1745.860 kb on - strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.862 kb on + strandat 1745.863 kb on - strandat 1745.863 kb on - strandat 1745.865 kb on + strandat 1745.866 kb on - strandat 1745.866 kb on - strandat 1745.905 kb on + strandat 1745.905 kb on + strandat 1745.944 kb on + strand, within Sama_1435at 1745.944 kb on + strand, within Sama_1435at 1745.946 kb on + strand, within Sama_1435at 1745.946 kb on + strand, within Sama_1435at 1745.946 kb on + strand, within Sama_1435at 1745.946 kb on + strand, within Sama_1435at 1745.946 kb on + strand, within Sama_1435at 1745.946 kb on + strand, within Sama_1435at 1745.946 kb on + strand, within Sama_1435at 1745.947 kb on - strand, within Sama_1435at 1745.947 kb on - strand, within Sama_1435at 1745.947 kb on - strand, within Sama_1435at 1745.947 kb on - strand, within Sama_1435at 1745.947 kb on - strand, within Sama_1435at 1745.947 kb on - strand, within Sama_1435at 1745.947 kb on - strand, within Sama_1435at 1745.947 kb on - strand, within Sama_1435at 1745.994 kb on + strand, within Sama_1435at 1746.027 kb on + strand, within Sama_1435at 1746.028 kb on - strand, within Sama_1435at 1746.044 kb on - strand, within Sama_1435at 1746.050 kb on - strand, within Sama_1435at 1746.160 kb on + strand, within Sama_1435at 1746.160 kb on + strand, within Sama_1435at 1746.161 kb on - strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.167 kb on - strand, within Sama_1435at 1746.167 kb on - strand, within Sama_1435at 1746.185 kb on - strand, within Sama_1435at 1746.185 kb on - strand, within Sama_1435at 1746.219 kb on + strand, within Sama_1435at 1746.253 kb on + strand, within Sama_1435at 1746.253 kb on + strand, within Sama_1435at 1746.254 kb on - strand, within Sama_1435at 1746.263 kb on - strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.370 kb on - strand, within Sama_1435at 1746.370 kb on - strand, within Sama_1435at 1746.374 kb on - strand, within Sama_1435at 1746.513 kb on + strand, within Sama_1435at 1746.513 kb on + strand, within Sama_1435at 1746.513 kb on + strand, within Sama_1435at 1746.513 kb on + strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.733 kb on + strand, within Sama_1436at 1746.749 kb on + strand, within Sama_1436at 1746.805 kb on + strand, within Sama_1436at 1746.873 kb on - strand, within Sama_1436at 1746.908 kb on + strand, within Sama_1436at 1746.930 kb on + strand, within Sama_1436at 1746.930 kb on + strand, within Sama_1436at 1746.930 kb on + strand, within Sama_1436at 1746.930 kb on + strand, within Sama_1436at 1746.931 kb on - strand, within Sama_1436at 1746.931 kb on - strand, within Sama_1436at 1746.990 kb on + strand, within Sama_1436

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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1,745,650 + -1.9
1,745,650 + +2.3
1,745,651 - -0.9
1,745,683 - -0.8
1,745,689 + +0.7
1,745,689 + +0.9
1,745,701 + -0.1
1,745,702 - +0.3
1,745,709 + -2.5
1,745,721 + +0.2
1,745,775 - -1.9
1,745,775 - +0.7
1,745,819 + +0.7
1,745,827 + +0.0
1,745,828 - -2.0
1,745,828 - -2.6
1,745,828 - -1.3
1,745,828 - -1.6
1,745,828 - +1.3
1,745,830 + +1.6
1,745,850 - -4.2
1,745,850 - -1.1
1,745,857 + -1.6
1,745,857 + -0.3
1,745,858 - +0.9
1,745,859 + -0.7
1,745,859 + -0.8
1,745,859 + -1.3
1,745,859 + -0.3
1,745,859 + -3.8
1,745,859 + +2.7
1,745,859 + -2.1
1,745,859 + -1.3
1,745,859 + +0.0
1,745,859 + -2.3
1,745,860 - +0.4
1,745,860 - -0.7
1,745,860 - -1.3
1,745,860 - -2.1
1,745,860 - -0.7
1,745,860 - -0.1
1,745,860 - -0.9
1,745,860 - +0.1
1,745,862 + -1.8
1,745,862 + +0.7
1,745,862 + -0.9
1,745,862 + -2.3
1,745,862 + +0.3
1,745,862 + -3.3
1,745,862 + -2.6
1,745,862 + -1.3
1,745,862 + +0.3
1,745,862 + -0.9
1,745,862 + -0.2
1,745,863 - -0.1
1,745,863 - -1.6
1,745,865 + -2.9
1,745,866 - -2.0
1,745,866 - -3.0
1,745,905 + +0.7
1,745,905 + -0.5
1,745,944 + Sama_1435 0.13 -1.1
1,745,944 + Sama_1435 0.13 -0.9
1,745,946 + Sama_1435 0.13 -2.7
1,745,946 + Sama_1435 0.13 -0.3
1,745,946 + Sama_1435 0.13 -1.6
1,745,946 + Sama_1435 0.13 +0.2
1,745,946 + Sama_1435 0.13 -0.3
1,745,946 + Sama_1435 0.13 +0.4
1,745,946 + Sama_1435 0.13 +1.1
1,745,947 - Sama_1435 0.14 -1.2
1,745,947 - Sama_1435 0.14 +0.2
1,745,947 - Sama_1435 0.14 +1.5
1,745,947 - Sama_1435 0.14 -2.0
1,745,947 - Sama_1435 0.14 +1.9
1,745,947 - Sama_1435 0.14 -2.8
1,745,947 - Sama_1435 0.14 -0.3
1,745,947 - Sama_1435 0.14 -2.8
1,745,994 + Sama_1435 0.20 -0.9
1,746,027 + Sama_1435 0.24 -1.2
1,746,028 - Sama_1435 0.24 -1.8
1,746,044 - Sama_1435 0.27 -1.9
1,746,050 - Sama_1435 0.27 -0.6
1,746,160 + Sama_1435 0.42 -0.6
1,746,160 + Sama_1435 0.42 -2.1
1,746,161 - Sama_1435 0.42 -0.3
1,746,166 + Sama_1435 0.43 -0.3
1,746,166 + Sama_1435 0.43 -1.9
1,746,166 + Sama_1435 0.43 -3.0
1,746,166 + Sama_1435 0.43 -0.0
1,746,166 + Sama_1435 0.43 -0.9
1,746,167 - Sama_1435 0.43 -2.8
1,746,167 - Sama_1435 0.43 +0.1
1,746,185 - Sama_1435 0.45 -3.1
1,746,185 - Sama_1435 0.45 -0.9
1,746,219 + Sama_1435 0.50 +0.3
1,746,253 + Sama_1435 0.54 -0.2
1,746,253 + Sama_1435 0.54 +0.4
1,746,254 - Sama_1435 0.55 -2.9
1,746,263 - Sama_1435 0.56 -1.8
1,746,369 + Sama_1435 0.70 -1.8
1,746,369 + Sama_1435 0.70 -1.3
1,746,369 + Sama_1435 0.70 -1.5
1,746,369 + Sama_1435 0.70 -0.8
1,746,369 + Sama_1435 0.70 -2.1
1,746,369 + Sama_1435 0.70 -1.3
1,746,370 - Sama_1435 0.70 -1.9
1,746,370 - Sama_1435 0.70 -1.8
1,746,374 - Sama_1435 0.71 -0.9
1,746,513 + Sama_1435 0.89 +0.7
1,746,513 + Sama_1435 0.89 -1.6
1,746,513 + Sama_1435 0.89 +0.4
1,746,513 + Sama_1435 0.89 +0.9
1,746,514 - Sama_1435 0.89 -2.2
1,746,514 - Sama_1435 0.89 -2.5
1,746,514 - Sama_1435 0.89 -1.9
1,746,514 - Sama_1435 0.89 -0.9
1,746,514 - Sama_1435 0.89 -2.0
1,746,514 - Sama_1435 0.89 -2.3
1,746,733 + Sama_1436 0.21 -0.5
1,746,749 + Sama_1436 0.26 -1.9
1,746,805 + Sama_1436 0.40 +1.6
1,746,873 - Sama_1436 0.58 -0.8
1,746,908 + Sama_1436 0.67 -1.3
1,746,930 + Sama_1436 0.72 +0.4
1,746,930 + Sama_1436 0.72 -1.6
1,746,930 + Sama_1436 0.72 -2.9
1,746,930 + Sama_1436 0.72 -0.8
1,746,931 - Sama_1436 0.73 +1.3
1,746,931 - Sama_1436 0.73 +0.4
1,746,990 + Sama_1436 0.88 -0.3

Or see this region's nucleotide sequence