Strain Fitness in Shewanella amazonensis SB2B around Sama_1405

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1404 and Sama_1405 are separated by 65 nucleotidesSama_1405 and Sama_1406 are separated by 263 nucleotides Sama_1404: Sama_1404 - Beta-glucosidase (EC 3.2.1.21) (from data), at 1,704,037 to 1,706,616 _1404 Sama_1405: Sama_1405 - glucokinase (EC 2.7.1.2) (from data), at 1,706,682 to 1,707,614 _1405 Sama_1406: Sama_1406 - hypothetical protein (RefSeq), at 1,707,878 to 1,708,816 _1406 Position (kb) 1706 1707 1708Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1706.262 kb on + strand, within Sama_1404at 1706.402 kb on + strandat 1706.403 kb on - strandat 1706.685 kb on + strandat 1706.685 kb on + strandat 1706.685 kb on + strandat 1706.686 kb on - strandat 1706.755 kb on + strandat 1706.755 kb on + strandat 1706.755 kb on + strandat 1706.755 kb on + strandat 1706.770 kb on + strandat 1706.770 kb on + strandat 1706.770 kb on + strandat 1706.771 kb on - strandat 1706.774 kb on + strandat 1706.774 kb on + strandat 1706.775 kb on - strandat 1706.788 kb on - strand, within Sama_1405at 1706.870 kb on + strand, within Sama_1405at 1706.870 kb on + strand, within Sama_1405at 1706.905 kb on + strand, within Sama_1405at 1706.905 kb on + strand, within Sama_1405at 1706.948 kb on + strand, within Sama_1405at 1707.056 kb on - strand, within Sama_1405at 1707.102 kb on - strand, within Sama_1405at 1707.102 kb on - strand, within Sama_1405at 1707.112 kb on + strand, within Sama_1405at 1707.112 kb on + strand, within Sama_1405at 1707.113 kb on - strand, within Sama_1405at 1707.113 kb on - strand, within Sama_1405at 1707.113 kb on - strand, within Sama_1405at 1707.113 kb on - strand, within Sama_1405at 1707.113 kb on - strand, within Sama_1405at 1707.185 kb on + strand, within Sama_1405at 1707.185 kb on + strand, within Sama_1405at 1707.186 kb on - strand, within Sama_1405at 1707.186 kb on - strand, within Sama_1405at 1707.357 kb on - strand, within Sama_1405at 1707.389 kb on + strand, within Sama_1405at 1707.415 kb on + strand, within Sama_1405at 1707.416 kb on - strand, within Sama_1405at 1707.453 kb on + strand, within Sama_1405at 1707.453 kb on + strand, within Sama_1405at 1707.453 kb on + strand, within Sama_1405at 1707.454 kb on - strand, within Sama_1405at 1707.459 kb on + strand, within Sama_1405at 1707.459 kb on + strand, within Sama_1405at 1707.460 kb on - strand, within Sama_1405at 1707.483 kb on + strand, within Sama_1405at 1707.483 kb on + strand, within Sama_1405at 1707.483 kb on + strand, within Sama_1405at 1707.483 kb on + strand, within Sama_1405at 1707.483 kb on + strand, within Sama_1405at 1707.483 kb on + strand, within Sama_1405at 1707.483 kb on + strand, within Sama_1405at 1707.483 kb on + strand, within Sama_1405at 1707.484 kb on - strand, within Sama_1405at 1707.484 kb on - strand, within Sama_1405at 1707.612 kb on + strandat 1707.612 kb on + strandat 1707.612 kb on + strandat 1707.613 kb on - strandat 1707.613 kb on - strandat 1707.613 kb on - strandat 1707.616 kb on + strandat 1707.616 kb on + strandat 1707.616 kb on + strandat 1707.616 kb on + strandat 1707.628 kb on + strandat 1707.628 kb on + strandat 1707.629 kb on - strandat 1707.638 kb on + strandat 1707.639 kb on - strandat 1707.670 kb on + strandat 1707.683 kb on + strandat 1707.684 kb on - strandat 1707.706 kb on + strandat 1707.706 kb on + strandat 1707.706 kb on + strandat 1707.706 kb on + strandat 1707.706 kb on + strandat 1707.707 kb on - strandat 1707.707 kb on - strandat 1707.714 kb on + strandat 1707.714 kb on + strandat 1707.714 kb on + strandat 1707.714 kb on + strandat 1707.714 kb on + strandat 1707.715 kb on - strandat 1707.805 kb on + strandat 1707.806 kb on - strandat 1707.936 kb on + strandat 1707.936 kb on + strandat 1707.937 kb on - strandat 1707.937 kb on - strandat 1707.937 kb on - strandat 1708.078 kb on + strand, within Sama_1406at 1708.078 kb on + strand, within Sama_1406at 1708.198 kb on + strand, within Sama_1406at 1708.198 kb on + strand, within Sama_1406at 1708.222 kb on + strand, within Sama_1406at 1708.222 kb on + strand, within Sama_1406at 1708.235 kb on + strand, within Sama_1406at 1708.235 kb on + strand, within Sama_1406at 1708.235 kb on + strand, within Sama_1406at 1708.236 kb on - strand, within Sama_1406at 1708.236 kb on - strand, within Sama_1406at 1708.236 kb on - strand, within Sama_1406at 1708.237 kb on + strand, within Sama_1406at 1708.238 kb on - strand, within Sama_1406at 1708.292 kb on - strand, within Sama_1406at 1708.328 kb on + strand, within Sama_1406at 1708.329 kb on - strand, within Sama_1406at 1708.411 kb on + strand, within Sama_1406at 1708.411 kb on + strand, within Sama_1406at 1708.411 kb on + strand, within Sama_1406at 1708.411 kb on + strand, within Sama_1406at 1708.411 kb on + strand, within Sama_1406at 1708.411 kb on + strand, within Sama_1406at 1708.412 kb on - strand, within Sama_1406at 1708.412 kb on - strand, within Sama_1406at 1708.412 kb on - strand, within Sama_1406at 1708.412 kb on - strand, within Sama_1406at 1708.412 kb on - strand, within Sama_1406at 1708.412 kb on - strand, within Sama_1406at 1708.412 kb on - strand, within Sama_1406at 1708.412 kb on - strand, within Sama_1406at 1708.413 kb on + strand, within Sama_1406at 1708.413 kb on + strand, within Sama_1406at 1708.413 kb on + strand, within Sama_1406at 1708.413 kb on + strand, within Sama_1406at 1708.413 kb on + strand, within Sama_1406at 1708.413 kb on + strand, within Sama_1406at 1708.414 kb on - strand, within Sama_1406at 1708.414 kb on - strand, within Sama_1406at 1708.430 kb on + strand, within Sama_1406at 1708.576 kb on + strand, within Sama_1406at 1708.576 kb on + strand, within Sama_1406at 1708.576 kb on + strand, within Sama_1406at 1708.576 kb on + strand, within Sama_1406at 1708.576 kb on + strand, within Sama_1406at 1708.595 kb on + strand, within Sama_1406at 1708.595 kb on + strand, within Sama_1406at 1708.596 kb on - strand, within Sama_1406at 1708.596 kb on - strand, within Sama_1406at 1708.597 kb on + strand, within Sama_1406at 1708.598 kb on - strand, within Sama_1406

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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1,706,262 + Sama_1404 0.86 +0.2
1,706,402 + -2.3
1,706,403 - +0.9
1,706,685 + -2.4
1,706,685 + +0.7
1,706,685 + +0.5
1,706,686 - -0.9
1,706,755 + +1.5
1,706,755 + +0.5
1,706,755 + +2.3
1,706,755 + -1.1
1,706,770 + +2.4
1,706,770 + +1.3
1,706,770 + -2.1
1,706,771 - +0.4
1,706,774 + +0.5
1,706,774 + +1.3
1,706,775 - -0.6
1,706,788 - Sama_1405 0.11 +0.1
1,706,870 + Sama_1405 0.20 +1.5
1,706,870 + Sama_1405 0.20 +1.0
1,706,905 + Sama_1405 0.24 +0.5
1,706,905 + Sama_1405 0.24 -2.1
1,706,948 + Sama_1405 0.29 -0.3
1,707,056 - Sama_1405 0.40 -0.7
1,707,102 - Sama_1405 0.45 +0.0
1,707,102 - Sama_1405 0.45 -0.6
1,707,112 + Sama_1405 0.46 +0.4
1,707,112 + Sama_1405 0.46 +1.3
1,707,113 - Sama_1405 0.46 +1.0
1,707,113 - Sama_1405 0.46 +1.8
1,707,113 - Sama_1405 0.46 -0.6
1,707,113 - Sama_1405 0.46 -1.9
1,707,113 - Sama_1405 0.46 -2.3
1,707,185 + Sama_1405 0.54 -1.6
1,707,185 + Sama_1405 0.54 +0.2
1,707,186 - Sama_1405 0.54 -1.9
1,707,186 - Sama_1405 0.54 -0.6
1,707,357 - Sama_1405 0.72 +1.1
1,707,389 + Sama_1405 0.76 +0.1
1,707,415 + Sama_1405 0.79 +0.5
1,707,416 - Sama_1405 0.79 +1.2
1,707,453 + Sama_1405 0.83 +1.4
1,707,453 + Sama_1405 0.83 -3.0
1,707,453 + Sama_1405 0.83 +0.6
1,707,454 - Sama_1405 0.83 +1.7
1,707,459 + Sama_1405 0.83 +1.8
1,707,459 + Sama_1405 0.83 -1.9
1,707,460 - Sama_1405 0.83 -0.9
1,707,483 + Sama_1405 0.86 +0.4
1,707,483 + Sama_1405 0.86 -1.6
1,707,483 + Sama_1405 0.86 +0.6
1,707,483 + Sama_1405 0.86 -0.9
1,707,483 + Sama_1405 0.86 -0.3
1,707,483 + Sama_1405 0.86 +2.9
1,707,483 + Sama_1405 0.86 +0.8
1,707,483 + Sama_1405 0.86 +1.3
1,707,484 - Sama_1405 0.86 +0.5
1,707,484 - Sama_1405 0.86 +1.3
1,707,612 + +0.6
1,707,612 + -0.9
1,707,612 + +1.1
1,707,613 - -0.0
1,707,613 - -1.6
1,707,613 - -1.4
1,707,616 + -3.3
1,707,616 + +1.0
1,707,616 + +1.8
1,707,616 + -0.0
1,707,628 + +0.6
1,707,628 + +0.7
1,707,629 - -1.1
1,707,638 + -2.3
1,707,639 - +0.2
1,707,670 + +2.0
1,707,683 + +0.3
1,707,684 - -2.3
1,707,706 + -1.6
1,707,706 + -1.9
1,707,706 + +0.1
1,707,706 + -0.3
1,707,706 + +1.4
1,707,707 - -1.6
1,707,707 - +0.5
1,707,714 + +0.9
1,707,714 + -2.1
1,707,714 + +0.4
1,707,714 + -1.6
1,707,714 + +2.5
1,707,715 - -3.8
1,707,805 + +0.7
1,707,806 - +0.0
1,707,936 + -0.9
1,707,936 + +1.3
1,707,937 - +2.2
1,707,937 - -0.3
1,707,937 - -0.2
1,708,078 + Sama_1406 0.21 -3.6
1,708,078 + Sama_1406 0.21 +0.7
1,708,198 + Sama_1406 0.34 +1.4
1,708,198 + Sama_1406 0.34 +1.3
1,708,222 + Sama_1406 0.37 -0.9
1,708,222 + Sama_1406 0.37 +0.1
1,708,235 + Sama_1406 0.38 +0.3
1,708,235 + Sama_1406 0.38 +1.1
1,708,235 + Sama_1406 0.38 -0.4
1,708,236 - Sama_1406 0.38 -1.6
1,708,236 - Sama_1406 0.38 +1.7
1,708,236 - Sama_1406 0.38 +0.3
1,708,237 + Sama_1406 0.38 -1.3
1,708,238 - Sama_1406 0.38 +1.0
1,708,292 - Sama_1406 0.44 -3.3
1,708,328 + Sama_1406 0.48 +1.7
1,708,329 - Sama_1406 0.48 +3.0
1,708,411 + Sama_1406 0.57 +1.5
1,708,411 + Sama_1406 0.57 -1.3
1,708,411 + Sama_1406 0.57 +1.1
1,708,411 + Sama_1406 0.57 +1.7
1,708,411 + Sama_1406 0.57 -1.6
1,708,411 + Sama_1406 0.57 +0.7
1,708,412 - Sama_1406 0.57 -0.3
1,708,412 - Sama_1406 0.57 +0.4
1,708,412 - Sama_1406 0.57 +2.6
1,708,412 - Sama_1406 0.57 -0.4
1,708,412 - Sama_1406 0.57 +0.1
1,708,412 - Sama_1406 0.57 +0.1
1,708,412 - Sama_1406 0.57 -0.3
1,708,412 - Sama_1406 0.57 +0.3
1,708,413 + Sama_1406 0.57 -0.3
1,708,413 + Sama_1406 0.57 -0.4
1,708,413 + Sama_1406 0.57 +1.4
1,708,413 + Sama_1406 0.57 -0.5
1,708,413 + Sama_1406 0.57 -2.4
1,708,413 + Sama_1406 0.57 +0.3
1,708,414 - Sama_1406 0.57 -0.6
1,708,414 - Sama_1406 0.57 -2.3
1,708,430 + Sama_1406 0.59 -4.1
1,708,576 + Sama_1406 0.74 -0.2
1,708,576 + Sama_1406 0.74 +1.3
1,708,576 + Sama_1406 0.74 -0.7
1,708,576 + Sama_1406 0.74 -1.6
1,708,576 + Sama_1406 0.74 -0.7
1,708,595 + Sama_1406 0.76 +0.4
1,708,595 + Sama_1406 0.76 +0.7
1,708,596 - Sama_1406 0.76 -0.9
1,708,596 - Sama_1406 0.76 +0.3
1,708,597 + Sama_1406 0.77 +1.1
1,708,598 - Sama_1406 0.77 +0.1

Or see this region's nucleotide sequence