Strain Fitness in Shewanella amazonensis SB2B around Sama_1386

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
1,676,601	+		Sama_1384	0.70	+0.1
1,676,647	-		Sama_1384	0.77	+2.3
1,676,649	+		Sama_1384	0.77	-2.4
1,676,649	+		Sama_1384	0.77	+0.2
1,676,649	+		Sama_1384	0.77	-1.1
1,676,650	-		Sama_1384	0.77	+2.1
1,676,650	-		Sama_1384	0.77	+0.7
1,676,650	-		Sama_1384	0.77	+2.0
1,676,655	+		Sama_1384	0.78	-0.7
1,676,655	+		Sama_1384	0.78	-0.1
1,676,737	+				+0.5
1,676,803	+				-0.8
1,676,804	-				-1.8
1,676,820	-				+0.1
1,676,820	-				+1.7
1,676,894	+				-0.3
1,676,950	-		Sama_1385	0.14	+0.9
1,676,966	+		Sama_1385	0.17	+2.7
1,677,161	+		Sama_1385	0.55	-2.1
1,677,161	+		Sama_1385	0.55	-1.6
1,677,162	-		Sama_1385	0.55	+0.2
1,677,162	-		Sama_1385	0.55	+0.2
1,677,303	+		Sama_1385	0.83	+0.2
1,677,303	+		Sama_1385	0.83	+0.7
1,677,307	+		Sama_1385	0.84	+0.9
1,677,308	-		Sama_1385	0.84	-0.4
1,677,308	-		Sama_1385	0.84	-1.8
1,677,308	-		Sama_1385	0.84	+1.5
1,677,308	-		Sama_1385	0.84	-1.4
1,677,416	+				+0.7
1,677,417	-				-1.5
1,677,417	-				-1.3
1,677,418	+				+1.2
1,677,418	+				+0.9
1,677,418	+				+0.7
1,677,419	-				-0.6
1,677,419	-				-0.1
1,677,419	-				-1.0
1,677,419	-				+0.8
1,677,419	-				+0.1
1,677,456	+				+0.5
1,677,456	+				+0.7
1,677,474	+				+0.2
1,677,474	+				+0.2
1,677,474	+				-1.0
1,677,475	-				+1.7
1,677,475	-				+0.6
1,677,475	-				+1.5
1,677,476	+				-0.6
1,677,476	+				-0.4
1,677,476	+				+0.3
1,677,476	+				+0.2
1,677,476	+				+1.7
1,677,476	+				-0.5
1,677,476	+				+0.5
1,677,477	-				+1.7
1,677,477	-				-0.3
1,677,477	-				-0.2
1,677,477	-				-0.3
1,677,479	+				+1.3
1,677,480	-				+0.1
1,677,499	+				+1.4
1,677,500	-				+2.3
1,677,500	-				+0.4
1,677,505	+				-0.8
1,677,505	+				-2.8
1,677,590	+				-0.8
1,677,591	-				+1.2
1,677,701	+				-0.2
1,677,701	+				+3.1
1,677,702	-				+0.0
1,677,773	+		Sama_1386	0.13	-0.8
1,677,827	+		Sama_1386	0.16	-0.5
1,677,875	+		Sama_1386	0.19	-0.0
1,677,875	+		Sama_1386	0.19	+0.2
1,677,875	+		Sama_1386	0.19	-2.1
1,677,875	+		Sama_1386	0.19	+2.2
1,677,875	+		Sama_1386	0.19	+0.5
1,677,876	-		Sama_1386	0.19	-1.8
1,677,876	-		Sama_1386	0.19	-2.3
1,677,879	+		Sama_1386	0.19	+0.7
1,677,879	+		Sama_1386	0.19	-0.1
1,677,880	-		Sama_1386	0.19	+1.5
1,677,880	-		Sama_1386	0.19	+1.7
1,678,175	+		Sama_1386	0.38	+0.2
1,678,175	+		Sama_1386	0.38	-1.6
1,678,190	+		Sama_1386	0.39	-1.8
1,678,209	+		Sama_1386	0.40	+0.5
1,678,229	+		Sama_1386	0.41	+0.0
1,678,290	+		Sama_1386	0.45	-1.8
1,678,290	+		Sama_1386	0.45	+2.2
1,678,290	+		Sama_1386	0.45	+1.3
1,678,290	+		Sama_1386	0.45	-1.4
1,678,290	+		Sama_1386	0.45	+0.1
1,678,290	+		Sama_1386	0.45	+0.0
1,678,291	-		Sama_1386	0.45	+0.7
1,678,291	-		Sama_1386	0.45	+0.3
1,678,291	-		Sama_1386	0.45	+1.3
1,678,291	-		Sama_1386	0.45	+1.7
1,678,291	-		Sama_1386	0.45	-0.5
1,678,488	+		Sama_1386	0.57	+1.0
1,678,488	+		Sama_1386	0.57	-2.1
1,678,488	+		Sama_1386	0.57	+0.6
1,678,537	+		Sama_1386	0.60	+0.4
1,678,662	-		Sama_1386	0.68	-0.3
1,678,662	-		Sama_1386	0.68	+1.0
1,678,731	+		Sama_1386	0.73	+0.6
1,678,731	+		Sama_1386	0.73	+1.2
1,678,732	-		Sama_1386	0.73	-1.3
1,678,844	+		Sama_1386	0.80	-0.8
1,678,844	+		Sama_1386	0.80	-1.8
1,678,844	+		Sama_1386	0.80	+0.0
1,678,886	-		Sama_1386	0.82	+0.4
1,678,946	+		Sama_1386	0.86	+1.4
1,678,991	+		Sama_1386	0.89	+0.3
1,679,030	+				-2.4
1,679,130	+				+0.5
1,679,150	+				+1.0
1,679,236	+				-0.8
1,679,282	+				-0.2
1,679,282	+				+1.5
1,679,282	+				-0.5
1,679,283	-				-2.4
1,679,283	-				+1.2
1,679,313	+				-1.6
1,679,313	+				+1.5
1,679,314	-				-1.3
1,679,314	-				+0.7
1,679,378	+				-0.3
1,679,379	-				+1.3
1,679,379	-				-0.8
1,679,411	+		Sama_1387	0.17	+1.7
1,679,428	+		Sama_1387	0.22	+0.4
1,679,505	-		Sama_1387	0.42	-0.7
1,679,666	+		Sama_1387	0.84	-2.3
1,679,666	+		Sama_1387	0.84	-0.4
1,679,667	-		Sama_1387	0.85	-1.8
1,679,682	+		Sama_1387	0.88	-1.6
1,679,723	+				+2.5
1,679,723	+				+0.0
1,679,723	+				+1.4
1,679,723	+				-1.4
1,679,723	+				+0.4
1,679,723	+				-0.6
1,679,724	-				-1.3
1,679,777	+				-0.4
1,679,795	+				+0.7
1,679,795	+				-0.3
1,679,795	+				+1.0
1,679,796	-				-0.6
1,679,796	-				+1.5
1,679,796	-				-3.5
1,679,796	-				+0.6
1,679,816	+				-0.3
1,679,816	+				-2.3
1,679,816	+				+1.3
1,679,816	+				-1.8
1,679,816	+				-2.1
1,679,816	+				-0.2
1,679,817	-				+1.0
1,679,817	-				-2.1
1,679,817	-				-0.1
1,679,817	-				-0.9
1,679,817	-				-0.3
1,679,817	-				+2.0
1,679,817	-				-1.6
1,679,818	+				+0.7
1,679,818	+				-0.7
1,679,818	+				-0.3
1,679,818	+				-1.3
1,679,818	+				-0.8
1,679,818	+				-3.1
1,679,818	+				+0.8
1,679,818	+				-1.6
1,679,819	-				-0.7
1,679,819	-				+0.4
1,679,819	-				-3.3
1,679,819	-				-1.3
1,679,819	-				-1.6
1,679,819	-				-0.3
1,679,819	-				+0.8
1,679,819	-				-2.6
1,679,820	+				-0.7
1,679,821	-				-0.0
1,679,835	+				+0.7
1,679,835	+				-0.1
1,679,836	-				-0.5
1,679,839	+				+1.4
1,679,839	+				-2.6
1,679,839	+				+0.5
1,679,839	+				-1.0
1,679,839	+				-1.6
1,679,839	+				+0.5
1,679,839	+				-0.5
1,679,840	-				-0.8
1,679,840	-				-2.6
1,679,840	-				+1.0
1,679,840	-				-0.6
1,679,840	-				+1.3
1,679,860	+				+2.1
1,679,860	+				+0.1
1,679,883	+				+0.5
1,679,958	+		Sama_1388	0.16	-3.1
1,679,959	-		Sama_1388	0.16	+0.0
1,680,133	+		Sama_1388	0.36	-0.3
1,680,133	+		Sama_1388	0.36	-0.2
1,680,133	+		Sama_1388	0.36	+0.7
1,680,134	-		Sama_1388	0.36	+0.7
1,680,134	-		Sama_1388	0.36	+0.5
1,680,134	-		Sama_1388	0.36	-0.7
1,680,134	-		Sama_1388	0.36	+2.3
1,680,134	-		Sama_1388	0.36	-1.3