Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0251 and Sama_R0014 are separated by 436 nucleotides Sama_R0014 and Sama_R0015 are separated by 266 nucleotides
Sama_0251: Sama_0251 - thioredoxin, putative (RefSeq), at 274,865 to 275,446
_0251
Sama_R0014: Sama_R0014 - 16S ribosomal RNA (RefSeq), at 275,883 to 277,419
_R0014
Sama_R0015: Sama_R0015 - 23S ribosomal RNA (RefSeq), at 277,686 to 280,599
_R0015
Position (kb) 275
276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 275.051 kb on + strand, within Sama_0251 at 275.051 kb on + strand, within Sama_0251 at 275.051 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.077 kb on + strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.078 kb on - strand, within Sama_0251 at 275.086 kb on + strand, within Sama_0251 at 275.086 kb on + strand, within Sama_0251 at 275.087 kb on - strand, within Sama_0251 at 275.116 kb on - strand, within Sama_0251 at 275.116 kb on - strand, within Sama_0251 at 275.134 kb on + strand, within Sama_0251 at 275.134 kb on + strand, within Sama_0251 at 275.134 kb on + strand, within Sama_0251 at 275.135 kb on - strand, within Sama_0251 at 275.179 kb on + strand, within Sama_0251 at 275.179 kb on + strand, within Sama_0251 at 275.179 kb on + strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.180 kb on - strand, within Sama_0251 at 275.194 kb on + strand, within Sama_0251 at 275.217 kb on + strand, within Sama_0251 at 275.271 kb on + strand, within Sama_0251 at 275.271 kb on + strand, within Sama_0251 at 275.272 kb on - strand, within Sama_0251 at 275.272 kb on - strand, within Sama_0251 at 275.293 kb on + strand, within Sama_0251 at 275.294 kb on - strand, within Sama_0251 at 275.312 kb on - strand, within Sama_0251 at 275.312 kb on - strand, within Sama_0251 at 275.317 kb on + strand, within Sama_0251 at 275.317 kb on + strand, within Sama_0251 at 275.317 kb on + strand, within Sama_0251 at 275.318 kb on - strand, within Sama_0251 at 275.320 kb on + strand, within Sama_0251 at 275.320 kb on + strand, within Sama_0251 at 275.321 kb on - strand, within Sama_0251 at 275.321 kb on - strand, within Sama_0251 at 275.374 kb on + strand, within Sama_0251 at 275.392 kb on + strand at 275.392 kb on + strand at 275.392 kb on + strand at 275.393 kb on - strand at 275.415 kb on + strand at 275.444 kb on + strand at 275.444 kb on + strand at 275.484 kb on + strand at 275.553 kb on - strand at 275.554 kb on + strand at 275.554 kb on + strand at 275.555 kb on - strand at 275.601 kb on + strand at 275.601 kb on + strand at 276.138 kb on + strand, within Sama_R0014 at 276.138 kb on + strand, within Sama_R0014 at 277.787 kb on + strand at 277.787 kb on + strand at 277.787 kb on + strand at 277.823 kb on + strand at 277.823 kb on + strand at 277.823 kb on + strand at 277.823 kb on + strand at 277.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 275,051 + Sama_0251 0.32 -2.7 275,051 + Sama_0251 0.32 +0.6 275,051 + Sama_0251 0.32 +0.6 275,077 + Sama_0251 0.36 -0.3 275,077 + Sama_0251 0.36 -1.6 275,077 + Sama_0251 0.36 -1.6 275,077 + Sama_0251 0.36 -1.0 275,077 + Sama_0251 0.36 +0.1 275,077 + Sama_0251 0.36 -1.4 275,078 - Sama_0251 0.37 -2.2 275,078 - Sama_0251 0.37 -1.4 275,078 - Sama_0251 0.37 -1.9 275,078 - Sama_0251 0.37 -1.6 275,078 - Sama_0251 0.37 -2.0 275,078 - Sama_0251 0.37 -2.6 275,086 + Sama_0251 0.38 +0.1 275,086 + Sama_0251 0.38 -0.2 275,087 - Sama_0251 0.38 -1.4 275,116 - Sama_0251 0.43 -0.2 275,116 - Sama_0251 0.43 -1.1 275,134 + Sama_0251 0.46 -0.9 275,134 + Sama_0251 0.46 -0.2 275,134 + Sama_0251 0.46 -0.2 275,135 - Sama_0251 0.46 -2.9 275,179 + Sama_0251 0.54 -1.2 275,179 + Sama_0251 0.54 -0.2 275,179 + Sama_0251 0.54 +0.6 275,180 - Sama_0251 0.54 -0.6 275,180 - Sama_0251 0.54 -1.6 275,180 - Sama_0251 0.54 -0.1 275,180 - Sama_0251 0.54 +2.0 275,180 - Sama_0251 0.54 -0.3 275,194 + Sama_0251 0.57 -2.7 275,217 + Sama_0251 0.60 -1.0 275,271 + Sama_0251 0.70 -1.9 275,271 + Sama_0251 0.70 +1.2 275,272 - Sama_0251 0.70 +0.4 275,272 - Sama_0251 0.70 -0.5 275,293 + Sama_0251 0.74 +1.2 275,294 - Sama_0251 0.74 -1.4 275,312 - Sama_0251 0.77 -2.7 275,312 - Sama_0251 0.77 -1.0 275,317 + Sama_0251 0.78 -0.6 275,317 + Sama_0251 0.78 -2.5 275,317 + Sama_0251 0.78 +0.0 275,318 - Sama_0251 0.78 +0.3 275,320 + Sama_0251 0.78 +1.0 275,320 + Sama_0251 0.78 +1.5 275,321 - Sama_0251 0.78 +1.6 275,321 - Sama_0251 0.78 +3.5 275,374 + Sama_0251 0.87 -1.6 275,392 + +1.4 275,392 + -1.2 275,392 + -0.0 275,393 - -3.0 275,415 + +0.7 275,444 + +0.7 275,444 + -1.9 275,484 + -1.0 275,553 - +0.7 275,554 + -1.4 275,554 + -0.5 275,555 - -0.0 275,601 + -1.2 275,601 + -0.4 276,138 + Sama_R0014 0.17 -0.4 276,138 + Sama_R0014 0.17 -3.0 277,787 + -0.8 277,787 + +0.8 277,787 + +0.4 277,823 + -1.6 277,823 + -1.7 277,823 + -0.4 277,823 + -1.5 277,823 + +0.8
Or see this region's nucleotide sequence