Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0136 and Sama_0137 are separated by 25 nucleotides Sama_0137 and Sama_0138 are separated by 5 nucleotides
Sama_0136: Sama_0136 - putative metal dependent phosphohydrolase (RefSeq), at 152,768 to 153,964
_0136
Sama_0137: Sama_0137 - molybdopterin biosynthesis protein MoeB (RefSeq), at 153,990 to 154,754
_0137
Sama_0138: Sama_0138 - molybdopterin biosynthesis MoeA protein (RefSeq), at 154,760 to 156,001
_0138
Position (kb) 153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 153.101 kb on - strand, within Sama_0136 at 153.101 kb on - strand, within Sama_0136 at 153.101 kb on - strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.147 kb on + strand, within Sama_0136 at 153.147 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.246 kb on - strand, within Sama_0136 at 153.246 kb on - strand, within Sama_0136 at 153.270 kb on + strand, within Sama_0136 at 153.270 kb on + strand, within Sama_0136 at 153.270 kb on + strand, within Sama_0136 at 153.271 kb on - strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.300 kb on - strand, within Sama_0136 at 153.300 kb on - strand, within Sama_0136 at 153.324 kb on + strand, within Sama_0136 at 153.360 kb on + strand, within Sama_0136 at 153.361 kb on - strand, within Sama_0136 at 153.361 kb on - strand, within Sama_0136 at 153.364 kb on + strand, within Sama_0136 at 153.364 kb on + strand, within Sama_0136 at 153.364 kb on + strand, within Sama_0136 at 153.365 kb on - strand, within Sama_0136 at 153.379 kb on + strand, within Sama_0136 at 153.380 kb on - strand, within Sama_0136 at 153.395 kb on - strand, within Sama_0136 at 153.449 kb on + strand, within Sama_0136 at 153.449 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.463 kb on + strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.464 kb on - strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.504 kb on + strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.505 kb on - strand, within Sama_0136 at 153.595 kb on + strand, within Sama_0136 at 153.604 kb on + strand, within Sama_0136 at 153.635 kb on + strand, within Sama_0136 at 153.635 kb on + strand, within Sama_0136 at 153.635 kb on + strand, within Sama_0136 at 153.635 kb on + strand, within Sama_0136 at 153.636 kb on - strand, within Sama_0136 at 153.636 kb on - strand, within Sama_0136 at 153.668 kb on - strand, within Sama_0136 at 153.668 kb on - strand, within Sama_0136 at 153.668 kb on - strand, within Sama_0136 at 153.716 kb on + strand, within Sama_0136 at 153.724 kb on + strand, within Sama_0136 at 153.733 kb on + strand, within Sama_0136 at 153.733 kb on + strand, within Sama_0136 at 153.743 kb on + strand, within Sama_0136 at 153.744 kb on - strand, within Sama_0136 at 153.843 kb on - strand, within Sama_0136 at 153.909 kb on + strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.910 kb on - strand at 153.942 kb on + strand at 153.942 kb on + strand at 153.943 kb on - strand at 153.943 kb on - strand at 153.959 kb on + strand at 153.959 kb on + strand at 153.959 kb on + strand at 153.991 kb on + strand at 153.991 kb on + strand at 153.992 kb on - strand at 153.992 kb on - strand at 154.038 kb on + strand at 154.038 kb on + strand at 154.121 kb on + strand, within Sama_0137 at 154.122 kb on - strand, within Sama_0137 at 154.122 kb on - strand, within Sama_0137 at 154.122 kb on - strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.140 kb on + strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.141 kb on - strand, within Sama_0137 at 154.175 kb on + strand, within Sama_0137 at 154.176 kb on - strand, within Sama_0137 at 154.231 kb on + strand, within Sama_0137 at 154.231 kb on + strand, within Sama_0137 at 154.231 kb on + strand, within Sama_0137 at 154.232 kb on - strand, within Sama_0137 at 154.232 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.253 kb on - strand, within Sama_0137 at 154.265 kb on + strand, within Sama_0137 at 154.308 kb on + strand, within Sama_0137 at 154.308 kb on + strand, within Sama_0137 at 154.308 kb on + strand, within Sama_0137 at 154.308 kb on + strand, within Sama_0137 at 154.309 kb on - strand, within Sama_0137 at 154.309 kb on - strand, within Sama_0137 at 154.309 kb on - strand, within Sama_0137 at 154.313 kb on + strand, within Sama_0137 at 154.314 kb on - strand, within Sama_0137 at 154.314 kb on - strand, within Sama_0137 at 154.314 kb on - strand, within Sama_0137 at 154.440 kb on + strand, within Sama_0137 at 154.441 kb on - strand, within Sama_0137 at 154.457 kb on + strand, within Sama_0137 at 154.458 kb on - strand, within Sama_0137 at 154.458 kb on - strand, within Sama_0137 at 154.458 kb on - strand, within Sama_0137 at 154.521 kb on + strand, within Sama_0137 at 154.521 kb on + strand, within Sama_0137 at 154.604 kb on - strand, within Sama_0137 at 154.604 kb on - strand, within Sama_0137 at 154.604 kb on - strand, within Sama_0137 at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.680 kb on + strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.681 kb on - strand at 154.683 kb on - strand at 154.683 kb on - strand at 154.714 kb on + strand at 154.714 kb on + strand at 154.714 kb on + strand at 154.715 kb on - strand at 154.715 kb on - strand at 154.720 kb on - strand at 154.740 kb on + strand at 154.740 kb on + strand at 154.740 kb on + strand at 154.740 kb on + strand at 154.740 kb on + strand at 154.741 kb on - strand at 154.741 kb on - strand at 154.741 kb on - strand at 154.762 kb on - strand at 154.774 kb on + strand at 154.774 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.795 kb on + strand at 154.841 kb on - strand at 154.873 kb on + strand at 154.873 kb on + strand at 154.873 kb on + strand at 154.873 kb on + strand at 154.874 kb on - strand at 154.874 kb on - strand at 154.874 kb on - strand at 154.874 kb on - strand at 154.874 kb on - strand at 154.930 kb on + strand, within Sama_0138 at 154.932 kb on - strand, within Sama_0138 at 154.932 kb on - strand, within Sama_0138 at 154.932 kb on - strand, within Sama_0138 at 155.041 kb on + strand, within Sama_0138 at 155.042 kb on - strand, within Sama_0138 at 155.042 kb on - strand, within Sama_0138 at 155.042 kb on - strand, within Sama_0138 at 155.364 kb on + strand, within Sama_0138 at 155.364 kb on + strand, within Sama_0138 at 155.365 kb on - strand, within Sama_0138 at 155.365 kb on - strand, within Sama_0138 at 155.380 kb on - strand, within Sama_0138 at 155.380 kb on - strand, within Sama_0138 at 155.462 kb on + strand, within Sama_0138 at 155.462 kb on + strand, within Sama_0138 at 155.463 kb on - strand, within Sama_0138 at 155.463 kb on - strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.522 kb on + strand, within Sama_0138 at 155.523 kb on - strand, within Sama_0138 at 155.523 kb on - strand, within Sama_0138 at 155.523 kb on - strand, within Sama_0138 at 155.523 kb on - strand, within Sama_0138 at 155.554 kb on + strand, within Sama_0138 at 155.554 kb on + strand, within Sama_0138 at 155.554 kb on + strand, within Sama_0138 at 155.555 kb on - strand, within Sama_0138 at 155.555 kb on - strand, within Sama_0138 at 155.608 kb on + strand, within Sama_0138 at 155.609 kb on - strand, within Sama_0138 at 155.726 kb on - strand, within Sama_0138
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 153,101 - Sama_0136 0.28 -2.0 153,101 - Sama_0136 0.28 -1.1 153,101 - Sama_0136 0.28 -1.1 153,111 + Sama_0136 0.29 -1.3 153,111 + Sama_0136 0.29 -2.0 153,111 + Sama_0136 0.29 +0.1 153,111 + Sama_0136 0.29 +1.1 153,111 + Sama_0136 0.29 -1.7 153,112 - Sama_0136 0.29 -1.0 153,112 - Sama_0136 0.29 -1.4 153,112 - Sama_0136 0.29 -1.0 153,112 - Sama_0136 0.29 +3.2 153,112 - Sama_0136 0.29 -1.1 153,112 - Sama_0136 0.29 -0.1 153,112 - Sama_0136 0.29 +0.6 153,147 + Sama_0136 0.32 -0.7 153,147 + Sama_0136 0.32 +1.9 153,175 + Sama_0136 0.34 -2.4 153,175 + Sama_0136 0.34 -2.4 153,175 + Sama_0136 0.34 -0.6 153,175 + Sama_0136 0.34 +0.5 153,176 - Sama_0136 0.34 +1.3 153,176 - Sama_0136 0.34 +1.1 153,176 - Sama_0136 0.34 +0.5 153,176 - Sama_0136 0.34 +3.5 153,246 - Sama_0136 0.40 +1.0 153,246 - Sama_0136 0.40 -1.2 153,270 + Sama_0136 0.42 -0.1 153,270 + Sama_0136 0.42 +0.3 153,270 + Sama_0136 0.42 +0.2 153,271 - Sama_0136 0.42 -0.4 153,299 + Sama_0136 0.44 -1.7 153,299 + Sama_0136 0.44 -0.4 153,299 + Sama_0136 0.44 -1.9 153,299 + Sama_0136 0.44 -0.3 153,300 - Sama_0136 0.44 -1.1 153,300 - Sama_0136 0.44 +0.5 153,324 + Sama_0136 0.46 +0.7 153,360 + Sama_0136 0.49 -1.3 153,361 - Sama_0136 0.50 -0.0 153,361 - Sama_0136 0.50 -0.1 153,364 + Sama_0136 0.50 -2.2 153,364 + Sama_0136 0.50 -1.6 153,364 + Sama_0136 0.50 -3.4 153,365 - Sama_0136 0.50 -1.3 153,379 + Sama_0136 0.51 +0.2 153,380 - Sama_0136 0.51 -2.3 153,395 - Sama_0136 0.52 -1.9 153,449 + Sama_0136 0.57 -1.8 153,449 + Sama_0136 0.57 -0.3 153,463 + Sama_0136 0.58 +0.1 153,463 + Sama_0136 0.58 -0.3 153,463 + Sama_0136 0.58 +0.5 153,463 + Sama_0136 0.58 -1.5 153,463 + Sama_0136 0.58 +0.1 153,463 + Sama_0136 0.58 +1.2 153,463 + Sama_0136 0.58 -1.5 153,463 + Sama_0136 0.58 -0.5 153,464 - Sama_0136 0.58 +2.0 153,464 - Sama_0136 0.58 -1.1 153,464 - Sama_0136 0.58 -1.7 153,464 - Sama_0136 0.58 -0.9 153,464 - Sama_0136 0.58 -1.5 153,464 - Sama_0136 0.58 +0.8 153,464 - Sama_0136 0.58 +0.3 153,464 - Sama_0136 0.58 -0.1 153,464 - Sama_0136 0.58 -2.9 153,464 - Sama_0136 0.58 -1.0 153,504 + Sama_0136 0.61 +0.5 153,504 + Sama_0136 0.61 +2.0 153,504 + Sama_0136 0.61 +0.1 153,504 + Sama_0136 0.61 -1.7 153,504 + Sama_0136 0.61 +1.4 153,504 + Sama_0136 0.61 +1.1 153,505 - Sama_0136 0.62 +2.1 153,505 - Sama_0136 0.62 -1.9 153,505 - Sama_0136 0.62 -0.5 153,505 - Sama_0136 0.62 -2.5 153,505 - Sama_0136 0.62 -1.2 153,595 + Sama_0136 0.69 -0.9 153,604 + Sama_0136 0.70 -1.9 153,635 + Sama_0136 0.72 +1.5 153,635 + Sama_0136 0.72 -1.1 153,635 + Sama_0136 0.72 +0.5 153,635 + Sama_0136 0.72 -2.3 153,636 - Sama_0136 0.73 +0.2 153,636 - Sama_0136 0.73 -0.1 153,668 - Sama_0136 0.75 +1.1 153,668 - Sama_0136 0.75 -0.3 153,668 - Sama_0136 0.75 +0.0 153,716 + Sama_0136 0.79 -1.5 153,724 + Sama_0136 0.80 -2.7 153,733 + Sama_0136 0.81 +0.4 153,733 + Sama_0136 0.81 +0.8 153,743 + Sama_0136 0.81 -3.1 153,744 - Sama_0136 0.82 -1.1 153,843 - Sama_0136 0.90 -0.1 153,909 + +1.4 153,910 - +0.7 153,910 - -1.0 153,910 - +1.2 153,910 - -1.9 153,910 - +0.7 153,910 - -2.5 153,942 + -2.3 153,942 + +0.1 153,943 - -0.5 153,943 - +1.5 153,959 + +1.6 153,959 + -1.1 153,959 + -1.7 153,991 + -0.2 153,991 + +1.2 153,992 - -1.3 153,992 - +0.4 154,038 + +3.5 154,038 + +0.1 154,121 + Sama_0137 0.17 -2.0 154,122 - Sama_0137 0.17 -0.4 154,122 - Sama_0137 0.17 -1.3 154,122 - Sama_0137 0.17 +0.7 154,140 + Sama_0137 0.20 +0.4 154,140 + Sama_0137 0.20 -2.0 154,140 + Sama_0137 0.20 -0.4 154,140 + Sama_0137 0.20 -0.1 154,140 + Sama_0137 0.20 +1.0 154,140 + Sama_0137 0.20 +0.3 154,140 + Sama_0137 0.20 +0.8 154,140 + Sama_0137 0.20 +1.0 154,140 + Sama_0137 0.20 -0.9 154,141 - Sama_0137 0.20 +1.8 154,141 - Sama_0137 0.20 -0.7 154,141 - Sama_0137 0.20 +1.2 154,141 - Sama_0137 0.20 +1.4 154,141 - Sama_0137 0.20 +2.1 154,175 + Sama_0137 0.24 +1.6 154,176 - Sama_0137 0.24 -0.4 154,231 + Sama_0137 0.32 -0.3 154,231 + Sama_0137 0.32 +0.9 154,231 + Sama_0137 0.32 -0.8 154,232 - Sama_0137 0.32 +1.1 154,232 - Sama_0137 0.32 -1.3 154,253 - Sama_0137 0.34 -0.3 154,253 - Sama_0137 0.34 -2.2 154,253 - Sama_0137 0.34 +2.0 154,253 - Sama_0137 0.34 -0.1 154,253 - Sama_0137 0.34 +0.4 154,265 + Sama_0137 0.36 -0.5 154,308 + Sama_0137 0.42 -1.1 154,308 + Sama_0137 0.42 -1.0 154,308 + Sama_0137 0.42 -0.8 154,308 + Sama_0137 0.42 +0.3 154,309 - Sama_0137 0.42 +0.9 154,309 - Sama_0137 0.42 -0.4 154,309 - Sama_0137 0.42 -0.1 154,313 + Sama_0137 0.42 +0.2 154,314 - Sama_0137 0.42 -1.7 154,314 - Sama_0137 0.42 +1.0 154,314 - Sama_0137 0.42 +0.7 154,440 + Sama_0137 0.59 -2.0 154,441 - Sama_0137 0.59 -0.2 154,457 + Sama_0137 0.61 -0.2 154,458 - Sama_0137 0.61 +1.1 154,458 - Sama_0137 0.61 -1.5 154,458 - Sama_0137 0.61 -2.4 154,521 + Sama_0137 0.69 +1.0 154,521 + Sama_0137 0.69 +0.6 154,604 - Sama_0137 0.80 +1.0 154,604 - Sama_0137 0.80 +0.5 154,604 - Sama_0137 0.80 +0.5 154,680 + +1.3 154,680 + -1.5 154,680 + +0.5 154,680 + +2.3 154,680 + -1.5 154,680 + -2.1 154,680 + +1.2 154,680 + -0.6 154,680 + +1.7 154,680 + -1.2 154,680 + +2.1 154,681 - +0.1 154,681 - +1.9 154,681 - +1.6 154,681 - +0.2 154,681 - -1.2 154,681 - +1.7 154,681 - +1.3 154,681 - +2.0 154,681 - +0.7 154,681 - +0.7 154,681 - -0.2 154,681 - +0.2 154,683 - +2.5 154,683 - +0.2 154,714 + +1.3 154,714 + +2.9 154,714 + -0.1 154,715 - -0.5 154,715 - +1.0 154,720 - +1.0 154,740 + +0.4 154,740 + +0.9 154,740 + -2.0 154,740 + +0.9 154,740 + -2.2 154,741 - -0.6 154,741 - +1.5 154,741 - +0.7 154,762 - -0.1 154,774 + -2.2 154,774 + +1.1 154,795 + +2.8 154,795 + -0.5 154,795 + +1.0 154,795 + -1.7 154,795 + -0.2 154,795 + -0.0 154,841 - +2.3 154,873 + +0.7 154,873 + -0.3 154,873 + +3.6 154,873 + -1.5 154,874 - -1.1 154,874 - -0.5 154,874 - +2.2 154,874 - +0.5 154,874 - -0.2 154,930 + Sama_0138 0.14 -1.3 154,932 - Sama_0138 0.14 -2.6 154,932 - Sama_0138 0.14 -1.1 154,932 - Sama_0138 0.14 +2.3 155,041 + Sama_0138 0.23 +0.4 155,042 - Sama_0138 0.23 +0.1 155,042 - Sama_0138 0.23 +0.8 155,042 - Sama_0138 0.23 +0.4 155,364 + Sama_0138 0.49 -0.8 155,364 + Sama_0138 0.49 +0.0 155,365 - Sama_0138 0.49 +1.9 155,365 - Sama_0138 0.49 -0.7 155,380 - Sama_0138 0.50 -2.6 155,380 - Sama_0138 0.50 -0.1 155,462 + Sama_0138 0.57 +2.8 155,462 + Sama_0138 0.57 +2.2 155,463 - Sama_0138 0.57 -0.1 155,463 - Sama_0138 0.57 +1.1 155,522 + Sama_0138 0.61 -2.7 155,522 + Sama_0138 0.61 -1.9 155,522 + Sama_0138 0.61 -2.1 155,522 + Sama_0138 0.61 +0.5 155,522 + Sama_0138 0.61 +0.9 155,523 - Sama_0138 0.61 +0.5 155,523 - Sama_0138 0.61 -0.4 155,523 - Sama_0138 0.61 +1.1 155,523 - Sama_0138 0.61 +0.5 155,554 + Sama_0138 0.64 +1.7 155,554 + Sama_0138 0.64 +0.9 155,554 + Sama_0138 0.64 +3.5 155,555 - Sama_0138 0.64 -0.3 155,555 - Sama_0138 0.64 +1.2 155,608 + Sama_0138 0.68 +0.3 155,609 - Sama_0138 0.68 +0.7 155,726 - Sama_0138 0.78 +0.6
Or see this region's nucleotide sequence