Strain Fitness in Shewanella amazonensis SB2B around Sama_0136

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
151,782	+		Sama_0135	0.27	+0.0
151,783	-		Sama_0135	0.27	-2.6
151,794	+		Sama_0135	0.29	-2.1
151,795	-		Sama_0135	0.29	-0.8
151,810	-		Sama_0135	0.31	-1.3
151,878	+		Sama_0135	0.40	-0.6
151,878	+		Sama_0135	0.40	-0.9
151,878	+		Sama_0135	0.40	+1.8
151,878	+		Sama_0135	0.40	-2.6
151,878	+		Sama_0135	0.40	+1.7
151,878	+		Sama_0135	0.40	-1.7
151,879	-		Sama_0135	0.40	-2.2
151,879	-		Sama_0135	0.40	-1.3
151,879	-		Sama_0135	0.40	-2.0
151,879	-		Sama_0135	0.40	-0.9
151,965	-		Sama_0135	0.52	-3.1
151,965	-		Sama_0135	0.52	-1.3
151,965	-		Sama_0135	0.52	+2.2
152,028	+		Sama_0135	0.60	-0.6
152,028	+		Sama_0135	0.60	+1.3
152,028	+		Sama_0135	0.60	+1.6
152,028	+		Sama_0135	0.60	+3.6
152,029	-		Sama_0135	0.60	+0.4
152,029	-		Sama_0135	0.60	+0.7
152,090	+		Sama_0135	0.69	+0.7
152,090	+		Sama_0135	0.69	+0.3
152,090	+		Sama_0135	0.69	+0.1
152,090	+		Sama_0135	0.69	-1.1
152,090	+		Sama_0135	0.69	+2.5
152,090	+		Sama_0135	0.69	-2.1
152,091	-		Sama_0135	0.69	+0.7
152,091	-		Sama_0135	0.69	+0.4
152,091	-		Sama_0135	0.69	-1.6
152,091	-		Sama_0135	0.69	-0.4
152,091	-		Sama_0135	0.69	-0.9
152,091	-		Sama_0135	0.69	-3.5
152,091	-		Sama_0135	0.69	-1.9
152,091	-		Sama_0135	0.69	-1.5
152,227	+		Sama_0135	0.87	-2.0
152,227	+		Sama_0135	0.87	-0.8
152,227	+		Sama_0135	0.87	-2.2
152,228	-		Sama_0135	0.87	-0.1
152,318	+				+0.3
152,354	-				-2.0
152,460	+				+0.7
152,462	+				-2.4
152,462	+				-0.6
152,462	+				-0.3
152,462	+				+0.4
152,463	-				+0.1
152,463	-				+0.5
152,463	-				-2.0
152,518	+				-2.9
152,518	+				-1.7
152,518	+				+0.5
152,519	-				+1.3
152,587	-				+0.0
152,612	+				+0.8
152,612	+				-1.1
152,612	+				+0.6
152,612	+				-0.1
152,612	+				+0.6
152,613	-				+0.8
152,613	-				-2.5
152,642	+				+1.0
152,642	+				-0.1
152,642	+				-1.5
152,642	+				+0.4
152,642	+				+0.2
152,642	+				-0.1
152,642	+				+1.1
152,642	+				-2.0
152,642	+				+1.7
152,642	+				+1.0
152,642	+				-3.2
152,643	-				-0.5
152,643	-				+0.0
152,643	-				-1.3
152,643	-				-1.3
152,643	-				-2.1
152,643	-				-1.1
152,643	-				-2.2
152,687	-				+0.5
152,712	+				+1.1
152,722	+				+2.7
152,722	+				-0.3
152,723	-				+0.6
152,723	-				+1.7
152,723	-				+0.4
152,728	+				-0.3
152,728	+				+0.3
152,728	+				-0.8
152,728	+				+1.5
152,728	+				-0.2
152,729	-				+0.6
152,729	-				-2.1
152,729	-				-0.2
152,729	-				-0.4
152,730	+				-1.3
152,730	+				+0.2
152,730	+				-1.5
152,731	-				-0.5
152,731	-				-1.7
152,731	-				-0.9
152,846	-				-0.1
152,929	+		Sama_0136	0.13	-0.1
152,929	+		Sama_0136	0.13	-3.9
153,101	-		Sama_0136	0.28	-2.0
153,101	-		Sama_0136	0.28	-1.1
153,101	-		Sama_0136	0.28	-1.1
153,111	+		Sama_0136	0.29	-1.3
153,111	+		Sama_0136	0.29	-2.0
153,111	+		Sama_0136	0.29	+0.1
153,111	+		Sama_0136	0.29	+1.1
153,111	+		Sama_0136	0.29	-1.7
153,112	-		Sama_0136	0.29	-1.0
153,112	-		Sama_0136	0.29	-1.4
153,112	-		Sama_0136	0.29	-1.0
153,112	-		Sama_0136	0.29	+3.2
153,112	-		Sama_0136	0.29	-1.1
153,112	-		Sama_0136	0.29	-0.1
153,112	-		Sama_0136	0.29	+0.6
153,147	+		Sama_0136	0.32	-0.7
153,147	+		Sama_0136	0.32	+1.9
153,175	+		Sama_0136	0.34	-2.4
153,175	+		Sama_0136	0.34	-2.4
153,175	+		Sama_0136	0.34	-0.6
153,175	+		Sama_0136	0.34	+0.5
153,176	-		Sama_0136	0.34	+1.3
153,176	-		Sama_0136	0.34	+1.1
153,176	-		Sama_0136	0.34	+0.5
153,176	-		Sama_0136	0.34	+3.5
153,246	-		Sama_0136	0.40	+1.0
153,246	-		Sama_0136	0.40	-1.2
153,270	+		Sama_0136	0.42	-0.1
153,270	+		Sama_0136	0.42	+0.3
153,270	+		Sama_0136	0.42	+0.2
153,271	-		Sama_0136	0.42	-0.4
153,299	+		Sama_0136	0.44	-1.7
153,299	+		Sama_0136	0.44	-0.4
153,299	+		Sama_0136	0.44	-1.9
153,299	+		Sama_0136	0.44	-0.3
153,300	-		Sama_0136	0.44	-1.1
153,300	-		Sama_0136	0.44	+0.5
153,324	+		Sama_0136	0.46	+0.7
153,360	+		Sama_0136	0.49	-1.3
153,361	-		Sama_0136	0.50	-0.0
153,361	-		Sama_0136	0.50	-0.1
153,364	+		Sama_0136	0.50	-2.2
153,364	+		Sama_0136	0.50	-1.6
153,364	+		Sama_0136	0.50	-3.4
153,365	-		Sama_0136	0.50	-1.3
153,379	+		Sama_0136	0.51	+0.2
153,380	-		Sama_0136	0.51	-2.3
153,395	-		Sama_0136	0.52	-1.9
153,449	+		Sama_0136	0.57	-1.8
153,449	+		Sama_0136	0.57	-0.3
153,463	+		Sama_0136	0.58	+0.1
153,463	+		Sama_0136	0.58	-0.3
153,463	+		Sama_0136	0.58	+0.5
153,463	+		Sama_0136	0.58	-1.5
153,463	+		Sama_0136	0.58	+0.1
153,463	+		Sama_0136	0.58	+1.2
153,463	+		Sama_0136	0.58	-1.5
153,463	+		Sama_0136	0.58	-0.5
153,464	-		Sama_0136	0.58	+2.0
153,464	-		Sama_0136	0.58	-1.1
153,464	-		Sama_0136	0.58	-1.7
153,464	-		Sama_0136	0.58	-0.9
153,464	-		Sama_0136	0.58	-1.5
153,464	-		Sama_0136	0.58	+0.8
153,464	-		Sama_0136	0.58	+0.3
153,464	-		Sama_0136	0.58	-0.1
153,464	-		Sama_0136	0.58	-2.9
153,464	-		Sama_0136	0.58	-1.0
153,504	+		Sama_0136	0.61	+0.5
153,504	+		Sama_0136	0.61	+2.0
153,504	+		Sama_0136	0.61	+0.1
153,504	+		Sama_0136	0.61	-1.7
153,504	+		Sama_0136	0.61	+1.4
153,504	+		Sama_0136	0.61	+1.1
153,505	-		Sama_0136	0.62	+2.1
153,505	-		Sama_0136	0.62	-1.9
153,505	-		Sama_0136	0.62	-0.5
153,505	-		Sama_0136	0.62	-2.5
153,505	-		Sama_0136	0.62	-1.2
153,595	+		Sama_0136	0.69	-0.9
153,604	+		Sama_0136	0.70	-1.9
153,635	+		Sama_0136	0.72	+1.5
153,635	+		Sama_0136	0.72	-1.1
153,635	+		Sama_0136	0.72	+0.5
153,635	+		Sama_0136	0.72	-2.3
153,636	-		Sama_0136	0.73	+0.2
153,636	-		Sama_0136	0.73	-0.1
153,668	-		Sama_0136	0.75	+1.1
153,668	-		Sama_0136	0.75	-0.3
153,668	-		Sama_0136	0.75	+0.0
153,716	+		Sama_0136	0.79	-1.5
153,724	+		Sama_0136	0.80	-2.7
153,733	+		Sama_0136	0.81	+0.4
153,733	+		Sama_0136	0.81	+0.8
153,743	+		Sama_0136	0.81	-3.1
153,744	-		Sama_0136	0.82	-1.1
153,843	-		Sama_0136	0.90	-0.1
153,909	+				+1.4
153,910	-				+0.7
153,910	-				-1.0
153,910	-				+1.2
153,910	-				-1.9
153,910	-				+0.7
153,910	-				-2.5
153,942	+				-2.3
153,942	+				+0.1
153,943	-				-0.5
153,943	-				+1.5
153,959	+				+1.6
153,959	+				-1.1
153,959	+				-1.7
153,991	+				-0.2
153,991	+				+1.2
153,992	-				-1.3
153,992	-				+0.4
154,038	+				+3.5
154,038	+				+0.1
154,121	+		Sama_0137	0.17	-2.0
154,122	-		Sama_0137	0.17	-0.4
154,122	-		Sama_0137	0.17	-1.3
154,122	-		Sama_0137	0.17	+0.7
154,140	+		Sama_0137	0.20	+0.4
154,140	+		Sama_0137	0.20	-2.0
154,140	+		Sama_0137	0.20	-0.4
154,140	+		Sama_0137	0.20	-0.1
154,140	+		Sama_0137	0.20	+1.0
154,140	+		Sama_0137	0.20	+0.3
154,140	+		Sama_0137	0.20	+0.8
154,140	+		Sama_0137	0.20	+1.0
154,140	+		Sama_0137	0.20	-0.9
154,141	-		Sama_0137	0.20	+1.8
154,141	-		Sama_0137	0.20	-0.7
154,141	-		Sama_0137	0.20	+1.2
154,141	-		Sama_0137	0.20	+1.4
154,141	-		Sama_0137	0.20	+2.1
154,175	+		Sama_0137	0.24	+1.6
154,176	-		Sama_0137	0.24	-0.4
154,231	+		Sama_0137	0.32	-0.3
154,231	+		Sama_0137	0.32	+0.9
154,231	+		Sama_0137	0.32	-0.8
154,232	-		Sama_0137	0.32	+1.1
154,232	-		Sama_0137	0.32	-1.3
154,253	-		Sama_0137	0.34	-0.3
154,253	-		Sama_0137	0.34	-2.2
154,253	-		Sama_0137	0.34	+2.0
154,253	-		Sama_0137	0.34	-0.1
154,253	-		Sama_0137	0.34	+0.4
154,265	+		Sama_0137	0.36	-0.5
154,308	+		Sama_0137	0.42	-1.1
154,308	+		Sama_0137	0.42	-1.0
154,308	+		Sama_0137	0.42	-0.8
154,308	+		Sama_0137	0.42	+0.3
154,309	-		Sama_0137	0.42	+0.9
154,309	-		Sama_0137	0.42	-0.4
154,309	-		Sama_0137	0.42	-0.1
154,313	+		Sama_0137	0.42	+0.2
154,314	-		Sama_0137	0.42	-1.7
154,314	-		Sama_0137	0.42	+1.0
154,314	-		Sama_0137	0.42	+0.7
154,440	+		Sama_0137	0.59	-2.0
154,441	-		Sama_0137	0.59	-0.2
154,457	+		Sama_0137	0.61	-0.2
154,458	-		Sama_0137	0.61	+1.1
154,458	-		Sama_0137	0.61	-1.5
154,458	-		Sama_0137	0.61	-2.4
154,521	+		Sama_0137	0.69	+1.0
154,521	+		Sama_0137	0.69	+0.6
154,604	-		Sama_0137	0.80	+1.0
154,604	-		Sama_0137	0.80	+0.5
154,604	-		Sama_0137	0.80	+0.5
154,680	+				+1.3
154,680	+				-1.5
154,680	+				+0.5
154,680	+				+2.3
154,680	+				-1.5
154,680	+				-2.1
154,680	+				+1.2
154,680	+				-0.6
154,680	+				+1.7
154,680	+				-1.2
154,680	+				+2.1
154,681	-				+0.1
154,681	-				+1.9
154,681	-				+1.6
154,681	-				+0.2
154,681	-				-1.2
154,681	-				+1.7
154,681	-				+1.3
154,681	-				+2.0
154,681	-				+0.7
154,681	-				+0.7
154,681	-				-0.2
154,681	-				+0.2
154,683	-				+2.5
154,683	-				+0.2
154,714	+				+1.3
154,714	+				+2.9
154,714	+				-0.1
154,715	-				-0.5
154,715	-				+1.0
154,720	-				+1.0
154,740	+				+0.4
154,740	+				+0.9
154,740	+				-2.0
154,740	+				+0.9
154,740	+				-2.2
154,741	-				-0.6
154,741	-				+1.5
154,741	-				+0.7
154,762	-				-0.1
154,774	+				-2.2
154,774	+				+1.1
154,795	+				+2.8
154,795	+				-0.5
154,795	+				+1.0
154,795	+				-1.7
154,795	+				-0.2
154,795	+				-0.0
154,841	-				+2.3
154,873	+				+0.7
154,873	+				-0.3
154,873	+				+3.6
154,873	+				-1.5
154,874	-				-1.1
154,874	-				-0.5
154,874	-				+2.2
154,874	-				+0.5
154,874	-				-0.2
154,930	+		Sama_0138	0.14	-1.3
154,932	-		Sama_0138	0.14	-2.6
154,932	-		Sama_0138	0.14	-1.1
154,932	-		Sama_0138	0.14	+2.3