Strain Fitness in Shewanella amazonensis SB2B around Sama_0134

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
150,170	+		Sama_0132	0.87	+1.5
150,170	+		Sama_0132	0.87	+0.1
150,170	+		Sama_0132	0.87	+1.7
150,170	+		Sama_0132	0.87	+1.7
150,170	+		Sama_0132	0.87	+0.5
150,171	-		Sama_0132	0.87	-0.1
150,171	-		Sama_0132	0.87	+0.8
150,171	-		Sama_0132	0.87	-0.1
150,171	-		Sama_0132	0.87	-0.9
150,177	+		Sama_0132	0.87	+1.0
150,257	+				-1.3
150,257	+				+1.5
150,257	+				+1.1
150,258	-				+0.3
150,258	-				-1.5
150,258	-				-2.0
150,271	+				-1.7
150,277	-				-0.7
150,326	+				+1.5
150,327	-				-1.7
150,327	-				+0.1
150,327	-				+2.2
150,369	+				-2.5
150,369	+				+0.5
150,369	+				+2.3
150,369	+				-0.5
150,369	+				-0.2
150,369	+				+1.1
150,369	+				-1.5
150,370	-				+1.5
150,370	-				-0.3
150,372	+				-1.9
150,372	+				+1.5
150,372	+				+1.0
150,372	+				-0.2
150,372	+				+0.5
150,372	+				+1.5
150,373	-				-0.3
150,373	-				-1.3
150,411	+				+0.8
150,411	+				-1.1
150,411	+				+0.6
150,412	-				+2.0
150,412	-				-0.1
150,412	-				+1.9
150,412	-				-2.1
150,561	+		Sama_0133	0.30	+0.8
150,561	+		Sama_0133	0.30	+2.1
150,561	+		Sama_0133	0.30	+0.2
150,561	+		Sama_0133	0.30	-0.6
150,562	-		Sama_0133	0.30	-3.3
150,562	-		Sama_0133	0.30	+2.1
150,562	-		Sama_0133	0.30	-0.9
150,589	+		Sama_0133	0.34	+0.7
150,589	+		Sama_0133	0.34	-1.1
150,589	+		Sama_0133	0.34	+1.3
150,590	-		Sama_0133	0.34	+3.1
150,602	+		Sama_0133	0.36	+0.2
150,602	+		Sama_0133	0.36	+0.9
150,603	-		Sama_0133	0.36	+0.8
150,686	+		Sama_0133	0.48	+1.4
150,694	+		Sama_0133	0.49	-0.6
150,694	+		Sama_0133	0.49	-1.1
150,694	+		Sama_0133	0.49	-0.1
150,695	-		Sama_0133	0.50	+0.0
150,695	-		Sama_0133	0.50	+2.0
150,696	+		Sama_0133	0.50	-0.1
150,696	+		Sama_0133	0.50	+0.7
150,697	-		Sama_0133	0.50	+0.6
150,697	-		Sama_0133	0.50	-1.0
150,697	-		Sama_0133	0.50	+1.6
150,697	-		Sama_0133	0.50	-2.3
150,697	-		Sama_0133	0.50	-2.0
150,697	-		Sama_0133	0.50	-1.7
150,798	+		Sama_0133	0.65	+1.8
150,868	+		Sama_0133	0.75	+0.5
150,868	+		Sama_0133	0.75	-2.1
150,868	+		Sama_0133	0.75	+0.8
150,868	+		Sama_0133	0.75	-1.4
150,869	-		Sama_0133	0.75	-0.1
150,869	-		Sama_0133	0.75	+1.1
150,898	+		Sama_0133	0.80	-0.9
150,898	+		Sama_0133	0.80	+0.3
150,898	+		Sama_0133	0.80	-1.6
150,899	-		Sama_0133	0.80	-1.7
150,899	-		Sama_0133	0.80	-0.1
150,906	+		Sama_0133	0.81	+0.9
151,010	-				+0.2
151,022	+				-0.0
151,022	+				-0.3
151,022	+				-1.1
151,023	-				+1.3
151,023	-				+0.7
151,042	+				-0.7
151,042	+				+0.5
151,043	-				-2.7
151,155	+		Sama_0134	0.24	+1.2
151,247	+		Sama_0134	0.40	+1.8
151,422	-		Sama_0134	0.72	+0.8
151,456	+		Sama_0134	0.78	+0.5
151,457	-		Sama_0134	0.78	+1.6
151,473	+		Sama_0134	0.81	+0.3
151,556	+				+1.2
151,556	+				-2.5
151,556	+				-0.5
151,556	+				-0.9
151,557	-				-3.2
151,557	-				-0.5
151,557	-				-1.0
151,598	+				-1.1
151,598	+				+1.3
151,598	+				+0.3
151,599	-				-1.4
151,599	-				-2.2
151,653	+				+0.9
151,653	+				+0.7
151,653	+				+0.9
151,653	+				+0.3
151,654	-				+0.7
151,654	-				-0.6
151,654	-				-1.3
151,654	-				-2.8
151,674	+		Sama_0135	0.13	-0.9
151,674	+		Sama_0135	0.13	+1.8
151,674	+		Sama_0135	0.13	-2.0
151,674	+		Sama_0135	0.13	-2.1
151,674	+		Sama_0135	0.13	-0.2
151,674	+		Sama_0135	0.13	+1.2
151,675	-		Sama_0135	0.13	-2.7
151,675	-		Sama_0135	0.13	+0.6
151,675	-		Sama_0135	0.13	-2.5
151,675	-		Sama_0135	0.13	-1.3
151,732	-		Sama_0135	0.20	-3.9
151,748	+		Sama_0135	0.23	+0.7
151,748	+		Sama_0135	0.23	+0.1
151,748	+		Sama_0135	0.23	+0.9
151,749	-		Sama_0135	0.23	-2.7
151,749	-		Sama_0135	0.23	+0.6
151,782	+		Sama_0135	0.27	+0.0
151,783	-		Sama_0135	0.27	-2.6
151,794	+		Sama_0135	0.29	-2.1
151,795	-		Sama_0135	0.29	-0.8
151,810	-		Sama_0135	0.31	-1.3
151,878	+		Sama_0135	0.40	-0.6
151,878	+		Sama_0135	0.40	-0.9
151,878	+		Sama_0135	0.40	+1.8
151,878	+		Sama_0135	0.40	-2.6
151,878	+		Sama_0135	0.40	+1.7
151,878	+		Sama_0135	0.40	-1.7
151,879	-		Sama_0135	0.40	-2.2
151,879	-		Sama_0135	0.40	-1.3
151,879	-		Sama_0135	0.40	-2.0
151,879	-		Sama_0135	0.40	-0.9
151,965	-		Sama_0135	0.52	-3.1
151,965	-		Sama_0135	0.52	-1.3
151,965	-		Sama_0135	0.52	+2.2
152,028	+		Sama_0135	0.60	-0.6
152,028	+		Sama_0135	0.60	+1.3
152,028	+		Sama_0135	0.60	+1.6
152,028	+		Sama_0135	0.60	+3.6
152,029	-		Sama_0135	0.60	+0.4
152,029	-		Sama_0135	0.60	+0.7
152,090	+		Sama_0135	0.69	+0.7
152,090	+		Sama_0135	0.69	+0.3
152,090	+		Sama_0135	0.69	+0.1
152,090	+		Sama_0135	0.69	-1.1
152,090	+		Sama_0135	0.69	+2.5
152,090	+		Sama_0135	0.69	-2.1
152,091	-		Sama_0135	0.69	+0.7
152,091	-		Sama_0135	0.69	+0.4
152,091	-		Sama_0135	0.69	-1.6
152,091	-		Sama_0135	0.69	-0.4
152,091	-		Sama_0135	0.69	-0.9
152,091	-		Sama_0135	0.69	-3.5
152,091	-		Sama_0135	0.69	-1.9
152,091	-		Sama_0135	0.69	-1.5
152,227	+		Sama_0135	0.87	-2.0
152,227	+		Sama_0135	0.87	-0.8
152,227	+		Sama_0135	0.87	-2.2
152,228	-		Sama_0135	0.87	-0.1
152,318	+				+0.3
152,354	-				-2.0
152,460	+				+0.7
152,462	+				-2.4
152,462	+				-0.6
152,462	+				-0.3
152,462	+				+0.4
152,463	-				+0.1
152,463	-				+0.5
152,463	-				-2.0
152,518	+				-2.9
152,518	+				-1.7
152,518	+				+0.5
152,519	-				+1.3