Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00150

Experiment: m.b. benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00140 and PGA1_78p00150 are separated by 23 nucleotidesPGA1_78p00150 and PGA1_78p00160 are separated by 150 nucleotides PGA1_78p00140: PGA1_78p00140 - Sugar phosphate isomerases/epimerases, at 16,755 to 17,810 _78p00140 PGA1_78p00150: PGA1_78p00150 - putative HTH-type transcriptional regulator, at 17,834 to 18,874 _78p00150 PGA1_78p00160: PGA1_78p00160 - putative sugar-binding periplasmic protein, at 19,025 to 20,254 _78p00160 Position (kb) 17 18 19Strain fitness (log2 ratio) -1 0 1 2at 17.056 kb on + strand, within PGA1_78p00140at 17.188 kb on + strand, within PGA1_78p00140at 17.312 kb on - strand, within PGA1_78p00140at 17.370 kb on - strand, within PGA1_78p00140at 17.821 kb on + strandat 18.010 kb on - strand, within PGA1_78p00150at 18.452 kb on - strand, within PGA1_78p00150at 18.683 kb on + strand, within PGA1_78p00150at 18.844 kb on + strandat 19.070 kb on - strandat 19.276 kb on + strand, within PGA1_78p00160at 19.414 kb on + strand, within PGA1_78p00160at 19.414 kb on + strand, within PGA1_78p00160at 19.461 kb on - strand, within PGA1_78p00160at 19.464 kb on + strand, within PGA1_78p00160at 19.579 kb on - strand, within PGA1_78p00160at 19.812 kb on - strand, within PGA1_78p00160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml
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17,056 + PGA1_78p00140 0.29 -1.3
17,188 + PGA1_78p00140 0.41 +0.1
17,312 - PGA1_78p00140 0.53 -0.1
17,370 - PGA1_78p00140 0.58 +0.8
17,821 + -0.9
18,010 - PGA1_78p00150 0.17 -0.5
18,452 - PGA1_78p00150 0.59 +2.6
18,683 + PGA1_78p00150 0.82 +0.3
18,844 + -1.5
19,070 - +0.1
19,276 + PGA1_78p00160 0.20 +1.8
19,414 + PGA1_78p00160 0.32 +0.2
19,414 + PGA1_78p00160 0.32 +1.5
19,461 - PGA1_78p00160 0.35 +0.8
19,464 + PGA1_78p00160 0.36 +0.5
19,579 - PGA1_78p00160 0.45 +0.5
19,812 - PGA1_78p00160 0.64 +2.3

Or see this region's nucleotide sequence