Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01360 and PGA1_262p01370 are separated by 90 nucleotides PGA1_262p01370 and PGA1_262p01380 overlap by 4 nucleotides
PGA1_262p01360: PGA1_262p01360 - transcriptional regulator, LysR family, at 146,433 to 147,374
_262p01360
PGA1_262p01370: PGA1_262p01370 - putative dioxygenase, at 147,465 to 148,619
_262p01370
PGA1_262p01380: PGA1_262p01380 - aldehyde dehydrogenase, at 148,616 to 150,067
_262p01380
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 146.498 kb on + strand at 146.597 kb on + strand, within PGA1_262p01360 at 146.597 kb on + strand, within PGA1_262p01360 at 146.597 kb on + strand, within PGA1_262p01360 at 146.682 kb on - strand, within PGA1_262p01360 at 146.775 kb on - strand, within PGA1_262p01360 at 146.849 kb on - strand, within PGA1_262p01360 at 146.849 kb on - strand, within PGA1_262p01360 at 146.862 kb on + strand, within PGA1_262p01360 at 146.870 kb on - strand, within PGA1_262p01360 at 147.213 kb on - strand, within PGA1_262p01360 at 147.495 kb on - strand at 147.503 kb on + strand at 147.533 kb on + strand at 147.533 kb on + strand at 147.541 kb on - strand at 147.628 kb on - strand, within PGA1_262p01370 at 147.690 kb on + strand, within PGA1_262p01370 at 147.712 kb on + strand, within PGA1_262p01370 at 147.778 kb on + strand, within PGA1_262p01370 at 147.786 kb on - strand, within PGA1_262p01370 at 147.846 kb on + strand, within PGA1_262p01370 at 147.859 kb on - strand, within PGA1_262p01370 at 147.893 kb on - strand, within PGA1_262p01370 at 148.068 kb on - strand, within PGA1_262p01370 at 148.111 kb on - strand, within PGA1_262p01370 at 148.119 kb on + strand, within PGA1_262p01370 at 148.121 kb on - strand, within PGA1_262p01370 at 148.177 kb on + strand, within PGA1_262p01370 at 148.192 kb on + strand, within PGA1_262p01370 at 148.304 kb on + strand, within PGA1_262p01370 at 148.379 kb on - strand, within PGA1_262p01370 at 148.441 kb on - strand, within PGA1_262p01370 at 148.578 kb on - strand at 148.643 kb on + strand at 148.765 kb on - strand, within PGA1_262p01380 at 148.775 kb on - strand, within PGA1_262p01380 at 148.791 kb on + strand, within PGA1_262p01380 at 149.019 kb on + strand, within PGA1_262p01380 at 149.019 kb on + strand, within PGA1_262p01380 at 149.103 kb on - strand, within PGA1_262p01380 at 149.117 kb on + strand, within PGA1_262p01380 at 149.124 kb on - strand, within PGA1_262p01380 at 149.125 kb on - strand, within PGA1_262p01380 at 149.471 kb on + strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 146,498 + +0.1 146,597 + PGA1_262p01360 0.17 +0.4 146,597 + PGA1_262p01360 0.17 -1.2 146,597 + PGA1_262p01360 0.17 -0.5 146,682 - PGA1_262p01360 0.26 +0.8 146,775 - PGA1_262p01360 0.36 -1.0 146,849 - PGA1_262p01360 0.44 -0.1 146,849 - PGA1_262p01360 0.44 +1.5 146,862 + PGA1_262p01360 0.46 +0.7 146,870 - PGA1_262p01360 0.46 +1.3 147,213 - PGA1_262p01360 0.83 -1.1 147,495 - +0.3 147,503 + -0.4 147,533 + -0.3 147,533 + +0.5 147,541 - -1.1 147,628 - PGA1_262p01370 0.14 -0.1 147,690 + PGA1_262p01370 0.19 +0.0 147,712 + PGA1_262p01370 0.21 -0.1 147,778 + PGA1_262p01370 0.27 -0.6 147,786 - PGA1_262p01370 0.28 +0.4 147,846 + PGA1_262p01370 0.33 +1.4 147,859 - PGA1_262p01370 0.34 +0.8 147,893 - PGA1_262p01370 0.37 +1.0 148,068 - PGA1_262p01370 0.52 +1.1 148,111 - PGA1_262p01370 0.56 +1.7 148,119 + PGA1_262p01370 0.57 -1.6 148,121 - PGA1_262p01370 0.57 -1.3 148,177 + PGA1_262p01370 0.62 +1.7 148,192 + PGA1_262p01370 0.63 +1.0 148,304 + PGA1_262p01370 0.73 +2.9 148,379 - PGA1_262p01370 0.79 -1.1 148,441 - PGA1_262p01370 0.85 -1.6 148,578 - -0.4 148,643 + -0.7 148,765 - PGA1_262p01380 0.10 +0.2 148,775 - PGA1_262p01380 0.11 -0.1 148,791 + PGA1_262p01380 0.12 +0.5 149,019 + PGA1_262p01380 0.28 +0.5 149,019 + PGA1_262p01380 0.28 +0.7 149,103 - PGA1_262p01380 0.34 +0.4 149,117 + PGA1_262p01380 0.35 +0.7 149,124 - PGA1_262p01380 0.35 -0.6 149,125 - PGA1_262p01380 0.35 -2.1 149,471 + PGA1_262p01380 0.59 +0.4 149,536 - PGA1_262p01380 0.63 +0.5 149,536 - PGA1_262p01380 0.63 -0.5
Or see this region's nucleotide sequence