Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00770 and PGA1_262p00780 are separated by 4 nucleotides PGA1_262p00780 and PGA1_262p00790 are separated by 97 nucleotides PGA1_262p00790 and PGA1_262p00800 are separated by 103 nucleotides
PGA1_262p00770: PGA1_262p00770 - putative lytic murein transglycosylase, at 86,081 to 87,325
_262p00770
PGA1_262p00780: PGA1_262p00780 - NAD dependent epimerase/dehydratase, at 87,330 to 88,439
_262p00780
PGA1_262p00790: PGA1_262p00790 - hypothetical protein, at 88,537 to 88,668
_262p00790
PGA1_262p00800: PGA1_262p00800 - phenylacetic acid degradation protein PaaZ, at 88,772 to 90,904
_262p00800
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 86.512 kb on + strand, within PGA1_262p00770 at 86.556 kb on + strand, within PGA1_262p00770 at 86.635 kb on + strand, within PGA1_262p00770 at 86.906 kb on - strand, within PGA1_262p00770 at 86.928 kb on - strand, within PGA1_262p00770 at 87.234 kb on - strand at 87.306 kb on + strand at 87.452 kb on + strand, within PGA1_262p00780 at 87.452 kb on + strand, within PGA1_262p00780 at 87.452 kb on + strand, within PGA1_262p00780 at 87.452 kb on + strand, within PGA1_262p00780 at 87.452 kb on + strand, within PGA1_262p00780 at 87.460 kb on - strand, within PGA1_262p00780 at 87.520 kb on + strand, within PGA1_262p00780 at 87.596 kb on + strand, within PGA1_262p00780 at 87.598 kb on + strand, within PGA1_262p00780 at 87.641 kb on + strand, within PGA1_262p00780 at 87.746 kb on + strand, within PGA1_262p00780 at 87.823 kb on + strand, within PGA1_262p00780 at 87.833 kb on + strand, within PGA1_262p00780 at 87.911 kb on + strand, within PGA1_262p00780 at 87.954 kb on + strand, within PGA1_262p00780 at 87.973 kb on + strand, within PGA1_262p00780 at 88.026 kb on - strand, within PGA1_262p00780 at 88.026 kb on - strand, within PGA1_262p00780 at 88.052 kb on + strand, within PGA1_262p00780 at 88.441 kb on + strand at 88.721 kb on + strand at 88.764 kb on + strand at 88.764 kb on + strand at 88.772 kb on - strand at 88.772 kb on - strand at 88.861 kb on - strand at 88.879 kb on + strand at 88.892 kb on - strand at 88.903 kb on - strand at 88.943 kb on + strand at 88.988 kb on + strand, within PGA1_262p00800 at 89.033 kb on + strand, within PGA1_262p00800 at 89.071 kb on + strand, within PGA1_262p00800 at 89.110 kb on + strand, within PGA1_262p00800 at 89.122 kb on + strand, within PGA1_262p00800 at 89.132 kb on + strand, within PGA1_262p00800 at 89.141 kb on + strand, within PGA1_262p00800 at 89.159 kb on + strand, within PGA1_262p00800 at 89.232 kb on + strand, within PGA1_262p00800 at 89.240 kb on - strand, within PGA1_262p00800 at 89.240 kb on - strand, within PGA1_262p00800 at 89.438 kb on + strand, within PGA1_262p00800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 86,512 + PGA1_262p00770 0.35 +2.3 86,556 + PGA1_262p00770 0.38 -2.1 86,635 + PGA1_262p00770 0.44 -1.1 86,906 - PGA1_262p00770 0.66 -3.5 86,928 - PGA1_262p00770 0.68 +1.5 87,234 - -0.2 87,306 + -0.5 87,452 + PGA1_262p00780 0.11 -0.9 87,452 + PGA1_262p00780 0.11 -0.7 87,452 + PGA1_262p00780 0.11 -2.1 87,452 + PGA1_262p00780 0.11 +0.4 87,452 + PGA1_262p00780 0.11 +0.6 87,460 - PGA1_262p00780 0.12 +1.2 87,520 + PGA1_262p00780 0.17 +0.4 87,596 + PGA1_262p00780 0.24 -0.1 87,598 + PGA1_262p00780 0.24 -2.9 87,641 + PGA1_262p00780 0.28 +0.2 87,746 + PGA1_262p00780 0.37 -0.7 87,823 + PGA1_262p00780 0.44 -1.8 87,833 + PGA1_262p00780 0.45 -0.9 87,911 + PGA1_262p00780 0.52 -0.2 87,954 + PGA1_262p00780 0.56 +0.3 87,973 + PGA1_262p00780 0.58 -1.8 88,026 - PGA1_262p00780 0.63 -0.5 88,026 - PGA1_262p00780 0.63 -0.1 88,052 + PGA1_262p00780 0.65 +0.0 88,441 + -0.1 88,721 + +0.8 88,764 + -1.0 88,764 + +0.9 88,772 - -0.6 88,772 - +0.3 88,861 - +1.1 88,879 + -0.5 88,892 - +0.2 88,903 - +0.2 88,943 + -1.1 88,988 + PGA1_262p00800 0.10 -0.1 89,033 + PGA1_262p00800 0.12 +0.7 89,071 + PGA1_262p00800 0.14 +0.4 89,110 + PGA1_262p00800 0.16 +0.3 89,122 + PGA1_262p00800 0.16 +0.9 89,132 + PGA1_262p00800 0.17 -0.6 89,141 + PGA1_262p00800 0.17 +0.3 89,159 + PGA1_262p00800 0.18 +0.3 89,232 + PGA1_262p00800 0.22 +0.4 89,240 - PGA1_262p00800 0.22 +0.5 89,240 - PGA1_262p00800 0.22 -1.6 89,438 + PGA1_262p00800 0.31 +1.1
Or see this region's nucleotide sequence