Experiment: m.b. benzoic 0.145 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26140 and PGA1_c26150 are separated by 592 nucleotides PGA1_c26150 and PGA1_c26160 are separated by 228 nucleotides
PGA1_c26140: PGA1_c26140 - RTX toxins and related Ca2+-binding proteins, at 2,719,004 to 2,722,342
_c26140
PGA1_c26150: PGA1_c26150 - putative ETC complex I subunit, at 2,722,935 to 2,723,246
_c26150
PGA1_c26160: PGA1_c26160 - uvrABC system protein B, at 2,723,475 to 2,725,673
_c26160
Position (kb)
2722
2723
2724 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2721.981 kb on - strand, within PGA1_c26140 at 2722.045 kb on + strand at 2722.045 kb on + strand at 2722.045 kb on + strand at 2722.045 kb on + strand at 2722.053 kb on - strand at 2722.055 kb on + strand at 2722.063 kb on - strand at 2722.063 kb on - strand at 2722.063 kb on - strand at 2722.063 kb on - strand at 2722.078 kb on + strand at 2722.089 kb on + strand at 2722.089 kb on + strand at 2722.129 kb on - strand at 2722.225 kb on + strand at 2722.234 kb on + strand at 2722.291 kb on - strand at 2722.317 kb on + strand at 2722.380 kb on - strand at 2722.411 kb on - strand at 2722.539 kb on + strand at 2722.572 kb on + strand at 2722.582 kb on + strand at 2722.611 kb on + strand at 2722.611 kb on + strand at 2722.611 kb on + strand at 2722.611 kb on + strand at 2722.611 kb on + strand at 2722.711 kb on - strand at 2722.742 kb on - strand at 2722.748 kb on - strand at 2722.750 kb on - strand at 2722.766 kb on + strand at 2722.848 kb on + strand at 2722.879 kb on + strand at 2722.887 kb on - strand at 2722.887 kb on - strand at 2722.932 kb on + strand at 2722.932 kb on + strand at 2722.932 kb on + strand at 2722.932 kb on + strand at 2722.932 kb on + strand at 2722.932 kb on + strand at 2722.932 kb on + strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2722.940 kb on - strand at 2723.022 kb on + strand, within PGA1_c26150 at 2723.022 kb on + strand, within PGA1_c26150 at 2723.111 kb on + strand, within PGA1_c26150 at 2723.177 kb on - strand, within PGA1_c26150 at 2723.248 kb on + strand at 2723.248 kb on + strand at 2723.256 kb on + strand at 2723.281 kb on - strand at 2723.289 kb on - strand at 2723.297 kb on - strand at 2723.330 kb on + strand at 2723.360 kb on + strand at 2723.361 kb on - strand at 2723.378 kb on + strand at 2723.390 kb on + strand at 2723.409 kb on + strand at 2723.449 kb on - strand at 2723.455 kb on + strand at 2723.457 kb on + strand at 2723.462 kb on + strand at 2723.462 kb on + strand at 2723.478 kb on + strand at 2723.485 kb on - strand at 2723.505 kb on - strand at 2723.515 kb on - strand at 2723.526 kb on + strand at 2723.526 kb on + strand at 2723.526 kb on + strand at 2723.531 kb on + strand at 2723.534 kb on - strand at 2723.539 kb on - strand at 2723.539 kb on - strand at 2723.551 kb on - strand at 2723.600 kb on + strand at 2723.600 kb on + strand at 2723.603 kb on - strand at 2723.608 kb on - strand at 2723.633 kb on + strand at 2723.704 kb on - strand, within PGA1_c26160 at 2723.785 kb on - strand, within PGA1_c26160 at 2723.805 kb on + strand, within PGA1_c26160 at 2723.849 kb on - strand, within PGA1_c26160 at 2723.854 kb on - strand, within PGA1_c26160 at 2723.972 kb on + strand, within PGA1_c26160 at 2723.985 kb on - strand, within PGA1_c26160 at 2723.995 kb on + strand, within PGA1_c26160 at 2724.000 kb on + strand, within PGA1_c26160 at 2724.000 kb on + strand, within PGA1_c26160 at 2724.008 kb on - strand, within PGA1_c26160 at 2724.008 kb on - strand, within PGA1_c26160 at 2724.062 kb on + strand, within PGA1_c26160 at 2724.062 kb on + strand, within PGA1_c26160 at 2724.132 kb on - strand, within PGA1_c26160 at 2724.132 kb on - strand, within PGA1_c26160 at 2724.174 kb on - strand, within PGA1_c26160 at 2724.217 kb on - strand, within PGA1_c26160 at 2724.226 kb on + strand, within PGA1_c26160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml remove 2,721,981 - PGA1_c26140 0.89 +0.7 2,722,045 + -0.6 2,722,045 + -1.2 2,722,045 + +0.2 2,722,045 + -0.2 2,722,053 - +0.4 2,722,055 + +0.6 2,722,063 - -3.5 2,722,063 - -0.3 2,722,063 - -0.4 2,722,063 - +0.2 2,722,078 + -0.0 2,722,089 + +0.1 2,722,089 + +0.2 2,722,129 - -1.2 2,722,225 + +0.1 2,722,234 + -0.5 2,722,291 - +0.0 2,722,317 + +1.1 2,722,380 - +0.3 2,722,411 - +1.4 2,722,539 + -0.0 2,722,572 + -2.2 2,722,582 + -0.4 2,722,611 + +0.7 2,722,611 + -1.8 2,722,611 + +1.5 2,722,611 + -0.7 2,722,611 + -0.0 2,722,711 - +0.3 2,722,742 - -2.5 2,722,748 - +0.3 2,722,750 - +0.0 2,722,766 + -0.3 2,722,848 + -0.0 2,722,879 + +1.1 2,722,887 - -0.1 2,722,887 - -0.7 2,722,932 + -0.7 2,722,932 + +0.4 2,722,932 + -0.4 2,722,932 + -0.2 2,722,932 + -0.6 2,722,932 + -1.3 2,722,932 + -0.6 2,722,940 - +0.1 2,722,940 - +0.8 2,722,940 - -2.0 2,722,940 - -1.3 2,722,940 - +0.7 2,722,940 - -1.0 2,722,940 - +0.9 2,722,940 - -1.2 2,722,940 - +0.2 2,722,940 - +1.2 2,722,940 - +0.7 2,722,940 - -0.5 2,722,940 - +0.0 2,722,940 - +0.4 2,723,022 + PGA1_c26150 0.28 -1.4 2,723,022 + PGA1_c26150 0.28 -0.8 2,723,111 + PGA1_c26150 0.56 -1.5 2,723,177 - PGA1_c26150 0.78 -0.3 2,723,248 + -0.5 2,723,248 + -0.0 2,723,256 + +0.2 2,723,281 - +0.9 2,723,289 - -1.0 2,723,297 - -2.3 2,723,330 + -1.1 2,723,360 + +0.9 2,723,361 - +1.4 2,723,378 + -0.3 2,723,390 + +0.8 2,723,409 + +0.5 2,723,449 - +0.4 2,723,455 + -0.1 2,723,457 + +0.2 2,723,462 + +0.3 2,723,462 + -0.4 2,723,478 + +0.3 2,723,485 - -0.5 2,723,505 - +0.2 2,723,515 - +0.1 2,723,526 + +0.4 2,723,526 + -1.1 2,723,526 + +0.9 2,723,531 + -1.9 2,723,534 - +0.1 2,723,539 - +0.1 2,723,539 - -1.0 2,723,551 - -0.1 2,723,600 + +1.1 2,723,600 + -1.2 2,723,603 - +0.4 2,723,608 - -0.6 2,723,633 + -0.5 2,723,704 - PGA1_c26160 0.10 -0.1 2,723,785 - PGA1_c26160 0.14 -0.5 2,723,805 + PGA1_c26160 0.15 -0.4 2,723,849 - PGA1_c26160 0.17 -0.0 2,723,854 - PGA1_c26160 0.17 +0.1 2,723,972 + PGA1_c26160 0.23 -0.2 2,723,985 - PGA1_c26160 0.23 -0.0 2,723,995 + PGA1_c26160 0.24 -0.3 2,724,000 + PGA1_c26160 0.24 -1.5 2,724,000 + PGA1_c26160 0.24 -0.6 2,724,008 - PGA1_c26160 0.24 -0.5 2,724,008 - PGA1_c26160 0.24 +0.1 2,724,062 + PGA1_c26160 0.27 +0.8 2,724,062 + PGA1_c26160 0.27 +0.3 2,724,132 - PGA1_c26160 0.30 -1.0 2,724,132 - PGA1_c26160 0.30 -0.4 2,724,174 - PGA1_c26160 0.32 -0.5 2,724,217 - PGA1_c26160 0.34 -1.3 2,724,226 + PGA1_c26160 0.34 +0.4
Or see this region's nucleotide sequence