Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02550

Experiment: m.b. benzoic 0.145 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02540 and PGA1_c02550 are separated by 11 nucleotidesPGA1_c02550 and PGA1_c02560 overlap by 1 nucleotidesPGA1_c02560 and PGA1_c02570 overlap by 14 nucleotides PGA1_c02540: PGA1_c02540 - Uncharacterized conserved protein, at 239,283 to 240,119 _c02540 PGA1_c02550: PGA1_c02550 - protocatechuate 3,4-dioxygenase alpha chain, at 240,131 to 240,775 _c02550 PGA1_c02560: PGA1_c02560 - protocatechuate 3,4-dioxygenase beta chain, at 240,775 to 241,500 _c02560 PGA1_c02570: PGA1_c02570 - putative 4-carboxymuconolactone decarboxylase PcaC, at 241,487 to 241,912 _c02570 Position (kb) 240 241Strain fitness (log2 ratio) -2 -1 0 1 2 3at 239.217 kb on - strandat 239.217 kb on - strandat 239.242 kb on - strandat 239.259 kb on - strandat 239.259 kb on - strandat 239.264 kb on - strandat 239.271 kb on - strandat 239.313 kb on + strandat 239.331 kb on + strandat 239.371 kb on - strand, within PGA1_c02540at 239.371 kb on - strand, within PGA1_c02540at 239.374 kb on + strand, within PGA1_c02540at 239.548 kb on + strand, within PGA1_c02540at 239.548 kb on + strand, within PGA1_c02540at 239.637 kb on - strand, within PGA1_c02540at 239.724 kb on - strand, within PGA1_c02540at 239.729 kb on - strand, within PGA1_c02540at 239.807 kb on - strand, within PGA1_c02540at 239.866 kb on + strand, within PGA1_c02540at 239.866 kb on + strand, within PGA1_c02540at 239.883 kb on + strand, within PGA1_c02540at 239.883 kb on + strand, within PGA1_c02540at 239.888 kb on + strand, within PGA1_c02540at 239.898 kb on + strand, within PGA1_c02540at 239.906 kb on - strand, within PGA1_c02540at 239.974 kb on - strand, within PGA1_c02540at 240.014 kb on - strand, within PGA1_c02540at 240.019 kb on + strand, within PGA1_c02540at 240.032 kb on + strand, within PGA1_c02540at 240.069 kb on + strandat 240.074 kb on + strandat 240.074 kb on + strandat 240.074 kb on + strandat 240.074 kb on + strandat 240.074 kb on + strandat 240.074 kb on + strandat 240.074 kb on + strandat 240.074 kb on + strandat 240.082 kb on - strandat 240.082 kb on - strandat 240.082 kb on - strandat 240.082 kb on - strandat 240.082 kb on - strandat 240.082 kb on - strandat 240.082 kb on - strandat 240.082 kb on - strandat 240.082 kb on - strandat 240.117 kb on - strandat 240.154 kb on + strandat 240.164 kb on + strandat 240.196 kb on - strand, within PGA1_c02550at 240.196 kb on - strand, within PGA1_c02550at 240.197 kb on - strand, within PGA1_c02550at 240.219 kb on + strand, within PGA1_c02550at 240.237 kb on - strand, within PGA1_c02550at 240.241 kb on + strand, within PGA1_c02550at 240.244 kb on - strand, within PGA1_c02550at 240.246 kb on + strand, within PGA1_c02550at 240.254 kb on - strand, within PGA1_c02550at 240.296 kb on - strand, within PGA1_c02550at 240.320 kb on + strand, within PGA1_c02550at 240.337 kb on + strand, within PGA1_c02550at 240.337 kb on + strand, within PGA1_c02550at 240.343 kb on + strand, within PGA1_c02550at 240.343 kb on + strand, within PGA1_c02550at 240.345 kb on - strand, within PGA1_c02550at 240.351 kb on - strand, within PGA1_c02550at 240.351 kb on - strand, within PGA1_c02550at 240.363 kb on + strand, within PGA1_c02550at 240.363 kb on + strand, within PGA1_c02550at 240.565 kb on + strand, within PGA1_c02550at 240.605 kb on - strand, within PGA1_c02550at 240.613 kb on + strand, within PGA1_c02550at 240.613 kb on - strand, within PGA1_c02550at 240.643 kb on - strand, within PGA1_c02550at 240.650 kb on - strand, within PGA1_c02550at 240.665 kb on + strand, within PGA1_c02550at 240.700 kb on - strand, within PGA1_c02550at 240.720 kb on - strandat 240.736 kb on + strandat 240.736 kb on + strandat 240.737 kb on - strandat 240.744 kb on - strandat 240.786 kb on - strandat 240.812 kb on - strandat 240.892 kb on + strand, within PGA1_c02560at 240.897 kb on + strand, within PGA1_c02560at 240.903 kb on - strand, within PGA1_c02560at 240.938 kb on - strand, within PGA1_c02560at 240.973 kb on - strand, within PGA1_c02560at 240.975 kb on + strand, within PGA1_c02560at 240.983 kb on - strand, within PGA1_c02560at 240.990 kb on + strand, within PGA1_c02560at 240.998 kb on - strand, within PGA1_c02560at 240.998 kb on - strand, within PGA1_c02560at 241.036 kb on - strand, within PGA1_c02560at 241.042 kb on + strand, within PGA1_c02560at 241.061 kb on + strand, within PGA1_c02560at 241.061 kb on + strand, within PGA1_c02560at 241.061 kb on + strand, within PGA1_c02560at 241.067 kb on + strand, within PGA1_c02560at 241.067 kb on + strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.069 kb on - strand, within PGA1_c02560at 241.075 kb on - strand, within PGA1_c02560at 241.082 kb on - strand, within PGA1_c02560at 241.082 kb on - strand, within PGA1_c02560at 241.112 kb on + strand, within PGA1_c02560at 241.112 kb on + strand, within PGA1_c02560at 241.119 kb on + strand, within PGA1_c02560at 241.143 kb on + strand, within PGA1_c02560at 241.227 kb on + strand, within PGA1_c02560at 241.230 kb on - strand, within PGA1_c02560at 241.240 kb on - strand, within PGA1_c02560at 241.340 kb on + strand, within PGA1_c02560at 241.348 kb on - strand, within PGA1_c02560at 241.362 kb on + strand, within PGA1_c02560at 241.365 kb on - strand, within PGA1_c02560at 241.382 kb on + strand, within PGA1_c02560at 241.386 kb on + strand, within PGA1_c02560at 241.386 kb on + strand, within PGA1_c02560at 241.399 kb on - strand, within PGA1_c02560at 241.419 kb on + strand, within PGA1_c02560at 241.503 kb on - strandat 241.518 kb on - strandat 241.597 kb on + strand, within PGA1_c02570at 241.601 kb on + strand, within PGA1_c02570at 241.605 kb on - strand, within PGA1_c02570at 241.618 kb on + strand, within PGA1_c02570at 241.645 kb on - strand, within PGA1_c02570at 241.647 kb on - strand, within PGA1_c02570at 241.658 kb on + strand, within PGA1_c02570at 241.676 kb on - strand, within PGA1_c02570at 241.746 kb on + strand, within PGA1_c02570at 241.746 kb on + strand, within PGA1_c02570

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.145 mg/ml
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239,217 - +0.3
239,217 - -1.4
239,242 - +2.4
239,259 - +1.0
239,259 - +0.9
239,264 - -0.9
239,271 - +0.3
239,313 + -0.8
239,331 + +1.6
239,371 - PGA1_c02540 0.11 -1.1
239,371 - PGA1_c02540 0.11 +0.2
239,374 + PGA1_c02540 0.11 +0.4
239,548 + PGA1_c02540 0.32 -0.2
239,548 + PGA1_c02540 0.32 -0.1
239,637 - PGA1_c02540 0.42 +0.6
239,724 - PGA1_c02540 0.53 -0.4
239,729 - PGA1_c02540 0.53 -1.8
239,807 - PGA1_c02540 0.63 -0.5
239,866 + PGA1_c02540 0.70 +0.5
239,866 + PGA1_c02540 0.70 +1.4
239,883 + PGA1_c02540 0.72 +0.9
239,883 + PGA1_c02540 0.72 -1.2
239,888 + PGA1_c02540 0.72 +0.3
239,898 + PGA1_c02540 0.73 +0.2
239,906 - PGA1_c02540 0.74 +0.8
239,974 - PGA1_c02540 0.83 +0.5
240,014 - PGA1_c02540 0.87 -0.2
240,019 + PGA1_c02540 0.88 -0.2
240,032 + PGA1_c02540 0.89 +0.6
240,069 + +0.4
240,074 + +0.9
240,074 + +0.8
240,074 + +0.0
240,074 + -0.5
240,074 + +0.8
240,074 + -0.9
240,074 + +0.0
240,074 + +1.0
240,082 - -1.5
240,082 - -0.1
240,082 - +0.6
240,082 - -0.3
240,082 - +1.5
240,082 - -0.6
240,082 - -1.3
240,082 - +0.6
240,082 - +0.6
240,117 - +0.1
240,154 + +1.4
240,164 + -0.6
240,196 - PGA1_c02550 0.10 -2.1
240,196 - PGA1_c02550 0.10 +0.6
240,197 - PGA1_c02550 0.10 +0.8
240,219 + PGA1_c02550 0.14 +0.7
240,237 - PGA1_c02550 0.16 +1.3
240,241 + PGA1_c02550 0.17 +3.2
240,244 - PGA1_c02550 0.18 +0.8
240,246 + PGA1_c02550 0.18 +0.5
240,254 - PGA1_c02550 0.19 +0.0
240,296 - PGA1_c02550 0.26 -0.7
240,320 + PGA1_c02550 0.29 +0.1
240,337 + PGA1_c02550 0.32 +1.2
240,337 + PGA1_c02550 0.32 -0.4
240,343 + PGA1_c02550 0.33 +0.3
240,343 + PGA1_c02550 0.33 +0.6
240,345 - PGA1_c02550 0.33 +0.8
240,351 - PGA1_c02550 0.34 -1.4
240,351 - PGA1_c02550 0.34 +0.2
240,363 + PGA1_c02550 0.36 +1.8
240,363 + PGA1_c02550 0.36 +0.9
240,565 + PGA1_c02550 0.67 +0.2
240,605 - PGA1_c02550 0.73 -0.1
240,613 + PGA1_c02550 0.75 +1.0
240,613 - PGA1_c02550 0.75 +0.5
240,643 - PGA1_c02550 0.79 -1.3
240,650 - PGA1_c02550 0.80 -0.3
240,665 + PGA1_c02550 0.83 +0.6
240,700 - PGA1_c02550 0.88 -0.3
240,720 - +1.9
240,736 + -0.8
240,736 + -1.1
240,737 - +0.2
240,744 - +1.0
240,786 - -0.4
240,812 - +0.2
240,892 + PGA1_c02560 0.16 +0.6
240,897 + PGA1_c02560 0.17 +1.1
240,903 - PGA1_c02560 0.18 +0.5
240,938 - PGA1_c02560 0.22 -1.8
240,973 - PGA1_c02560 0.27 +1.8
240,975 + PGA1_c02560 0.28 -0.2
240,983 - PGA1_c02560 0.29 +1.4
240,990 + PGA1_c02560 0.30 +0.3
240,998 - PGA1_c02560 0.31 -1.4
240,998 - PGA1_c02560 0.31 -0.4
241,036 - PGA1_c02560 0.36 +0.2
241,042 + PGA1_c02560 0.37 +0.0
241,061 + PGA1_c02560 0.39 +1.6
241,061 + PGA1_c02560 0.39 +0.6
241,061 + PGA1_c02560 0.39 -0.8
241,067 + PGA1_c02560 0.40 -2.2
241,067 + PGA1_c02560 0.40 -1.2
241,069 - PGA1_c02560 0.40 -1.7
241,069 - PGA1_c02560 0.40 +1.4
241,069 - PGA1_c02560 0.40 +0.4
241,069 - PGA1_c02560 0.40 -0.2
241,069 - PGA1_c02560 0.40 -0.2
241,075 - PGA1_c02560 0.41 +0.8
241,082 - PGA1_c02560 0.42 -0.4
241,082 - PGA1_c02560 0.42 -0.2
241,112 + PGA1_c02560 0.46 +0.6
241,112 + PGA1_c02560 0.46 -0.9
241,119 + PGA1_c02560 0.47 -1.3
241,143 + PGA1_c02560 0.51 +0.3
241,227 + PGA1_c02560 0.62 -0.2
241,230 - PGA1_c02560 0.63 +2.6
241,240 - PGA1_c02560 0.64 -0.1
241,340 + PGA1_c02560 0.78 -0.8
241,348 - PGA1_c02560 0.79 -0.1
241,362 + PGA1_c02560 0.81 -1.2
241,365 - PGA1_c02560 0.81 -0.5
241,382 + PGA1_c02560 0.84 -0.1
241,386 + PGA1_c02560 0.84 +0.1
241,386 + PGA1_c02560 0.84 -0.7
241,399 - PGA1_c02560 0.86 -0.4
241,419 + PGA1_c02560 0.89 +0.8
241,503 - -0.6
241,518 - +0.8
241,597 + PGA1_c02570 0.26 +0.8
241,601 + PGA1_c02570 0.27 +0.3
241,605 - PGA1_c02570 0.28 +1.7
241,618 + PGA1_c02570 0.31 +0.2
241,645 - PGA1_c02570 0.37 -1.0
241,647 - PGA1_c02570 0.38 +0.1
241,658 + PGA1_c02570 0.40 -1.0
241,676 - PGA1_c02570 0.44 +1.2
241,746 + PGA1_c02570 0.61 +0.1
241,746 + PGA1_c02570 0.61 -0.5

Or see this region's nucleotide sequence