Experiment: m.b. Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05040 and PGA1_c05050 are separated by 311 nucleotides PGA1_c05050 and PGA1_c05060 are separated by 124 nucleotides PGA1_c05060 and PGA1_c05070 are separated by 20 nucleotides
PGA1_c05040: PGA1_c05040 - transposase, at 498,177 to 498,566
_c05040
PGA1_c05050: PGA1_c05050 - tRNA-Ser, at 498,878 to 498,967
_c05050
PGA1_c05060: PGA1_c05060 - putative short chain dehydrogenase, at 499,092 to 499,790
_c05060
PGA1_c05070: PGA1_c05070 - putative pyridoxal-phosphate-dependent aminotransferase, at 499,811 to 500,908
_c05070
Position (kb) 499
500 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 498.635 kb on - strand at 498.659 kb on + strand at 498.680 kb on + strand at 498.693 kb on - strand at 498.718 kb on - strand at 498.740 kb on + strand at 498.740 kb on + strand at 498.740 kb on + strand at 498.740 kb on + strand at 498.748 kb on - strand at 498.748 kb on - strand at 498.748 kb on - strand at 498.755 kb on + strand at 498.986 kb on + strand at 499.004 kb on - strand at 499.015 kb on + strand at 499.066 kb on - strand at 499.078 kb on + strand at 499.113 kb on + strand at 499.121 kb on - strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.123 kb on + strand at 499.124 kb on + strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.131 kb on - strand at 499.151 kb on + strand at 499.175 kb on - strand, within PGA1_c05060 at 499.197 kb on + strand, within PGA1_c05060 at 499.197 kb on + strand, within PGA1_c05060 at 499.205 kb on - strand, within PGA1_c05060 at 499.210 kb on - strand, within PGA1_c05060 at 499.262 kb on - strand, within PGA1_c05060 at 499.262 kb on - strand, within PGA1_c05060 at 499.263 kb on + strand, within PGA1_c05060 at 499.276 kb on - strand, within PGA1_c05060 at 499.280 kb on + strand, within PGA1_c05060 at 499.280 kb on + strand, within PGA1_c05060 at 499.280 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.289 kb on + strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.297 kb on - strand, within PGA1_c05060 at 499.306 kb on + strand, within PGA1_c05060 at 499.308 kb on + strand, within PGA1_c05060 at 499.352 kb on + strand, within PGA1_c05060 at 499.407 kb on - strand, within PGA1_c05060 at 499.449 kb on + strand, within PGA1_c05060 at 499.524 kb on + strand, within PGA1_c05060 at 499.524 kb on + strand, within PGA1_c05060 at 499.524 kb on + strand, within PGA1_c05060 at 499.530 kb on + strand, within PGA1_c05060 at 499.532 kb on - strand, within PGA1_c05060 at 499.545 kb on + strand, within PGA1_c05060 at 499.545 kb on + strand, within PGA1_c05060 at 499.545 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.550 kb on + strand, within PGA1_c05060 at 499.553 kb on - strand, within PGA1_c05060 at 499.558 kb on - strand, within PGA1_c05060 at 499.558 kb on - strand, within PGA1_c05060 at 499.558 kb on - strand, within PGA1_c05060 at 499.575 kb on + strand, within PGA1_c05060 at 499.610 kb on + strand, within PGA1_c05060 at 499.610 kb on + strand, within PGA1_c05060 at 499.654 kb on - strand, within PGA1_c05060 at 499.665 kb on + strand, within PGA1_c05060 at 499.683 kb on - strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.685 kb on + strand, within PGA1_c05060 at 499.690 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.693 kb on - strand, within PGA1_c05060 at 499.730 kb on + strand at 499.738 kb on + strand at 499.738 kb on + strand at 499.738 kb on + strand at 499.738 kb on + strand at 499.738 kb on + strand at 499.746 kb on - strand at 499.783 kb on + strand at 499.801 kb on - strand at 499.809 kb on + strand at 499.830 kb on - strand at 499.865 kb on - strand at 499.867 kb on - strand at 499.867 kb on - strand at 499.867 kb on - strand at 499.872 kb on - strand at 499.972 kb on + strand, within PGA1_c05070 at 499.977 kb on + strand, within PGA1_c05070 at 499.977 kb on + strand, within PGA1_c05070 at 499.982 kb on + strand, within PGA1_c05070 at 499.985 kb on - strand, within PGA1_c05070 at 500.040 kb on + strand, within PGA1_c05070 at 500.104 kb on + strand, within PGA1_c05070 at 500.114 kb on + strand, within PGA1_c05070 at 500.176 kb on - strand, within PGA1_c05070 at 500.211 kb on + strand, within PGA1_c05070 at 500.225 kb on + strand, within PGA1_c05070 at 500.225 kb on + strand, within PGA1_c05070 at 500.293 kb on + strand, within PGA1_c05070 at 500.293 kb on + strand, within PGA1_c05070 at 500.359 kb on + strand, within PGA1_c05070 at 500.367 kb on - strand, within PGA1_c05070 at 500.449 kb on + strand, within PGA1_c05070 at 500.449 kb on + strand, within PGA1_c05070 at 500.457 kb on - strand, within PGA1_c05070 at 500.520 kb on + strand, within PGA1_c05070 at 500.543 kb on + strand, within PGA1_c05070 at 500.589 kb on + strand, within PGA1_c05070 at 500.611 kb on + strand, within PGA1_c05070 at 500.622 kb on + strand, within PGA1_c05070 at 500.631 kb on + strand, within PGA1_c05070 at 500.640 kb on - strand, within PGA1_c05070 at 500.684 kb on - strand, within PGA1_c05070 at 500.713 kb on + strand, within PGA1_c05070 at 500.740 kb on + strand, within PGA1_c05070 at 500.748 kb on - strand, within PGA1_c05070 at 500.748 kb on - strand, within PGA1_c05070 at 500.750 kb on + strand, within PGA1_c05070 at 500.787 kb on + strand, within PGA1_c05070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM remove 498,635 - +0.2 498,659 + -1.1 498,680 + +0.3 498,693 - -1.1 498,718 - +0.2 498,740 + +0.3 498,740 + -0.3 498,740 + +0.7 498,740 + +0.8 498,748 - -0.8 498,748 - -0.4 498,748 - -0.1 498,755 + +0.4 498,986 + -0.7 499,004 - -0.0 499,015 + -0.8 499,066 - -0.7 499,078 + +0.5 499,113 + -1.0 499,121 - -1.1 499,123 + +0.7 499,123 + -0.5 499,123 + +0.1 499,123 + +0.6 499,123 + -0.1 499,124 + +0.1 499,131 - -1.0 499,131 - +0.9 499,131 - -0.7 499,131 - -0.5 499,131 - +0.3 499,131 - -0.2 499,131 - +0.4 499,131 - -0.9 499,131 - -1.1 499,131 - -1.1 499,151 + -1.7 499,175 - PGA1_c05060 0.12 +0.9 499,197 + PGA1_c05060 0.15 -0.9 499,197 + PGA1_c05060 0.15 -0.3 499,205 - PGA1_c05060 0.16 -0.4 499,210 - PGA1_c05060 0.17 +0.1 499,262 - PGA1_c05060 0.24 +0.6 499,262 - PGA1_c05060 0.24 -1.6 499,263 + PGA1_c05060 0.24 -0.4 499,276 - PGA1_c05060 0.26 -0.0 499,280 + PGA1_c05060 0.27 +1.4 499,280 + PGA1_c05060 0.27 +1.3 499,280 + PGA1_c05060 0.27 +0.9 499,289 + PGA1_c05060 0.28 +0.8 499,289 + PGA1_c05060 0.28 -0.5 499,289 + PGA1_c05060 0.28 -0.2 499,289 + PGA1_c05060 0.28 -0.4 499,289 + PGA1_c05060 0.28 +0.5 499,289 + PGA1_c05060 0.28 -0.5 499,289 + PGA1_c05060 0.28 +1.3 499,289 + PGA1_c05060 0.28 +0.4 499,289 + PGA1_c05060 0.28 -1.3 499,289 + PGA1_c05060 0.28 +0.1 499,289 + PGA1_c05060 0.28 -0.2 499,289 + PGA1_c05060 0.28 +0.4 499,289 + PGA1_c05060 0.28 -0.2 499,289 + PGA1_c05060 0.28 -1.1 499,289 + PGA1_c05060 0.28 +0.4 499,289 + PGA1_c05060 0.28 -0.4 499,289 + PGA1_c05060 0.28 -1.9 499,289 + PGA1_c05060 0.28 -1.2 499,289 + PGA1_c05060 0.28 +0.1 499,289 + PGA1_c05060 0.28 -0.4 499,289 + PGA1_c05060 0.28 -0.4 499,289 + PGA1_c05060 0.28 -0.1 499,289 + PGA1_c05060 0.28 +0.7 499,289 + PGA1_c05060 0.28 -0.3 499,289 + PGA1_c05060 0.28 +1.5 499,289 + PGA1_c05060 0.28 +1.3 499,289 + PGA1_c05060 0.28 +2.1 499,297 - PGA1_c05060 0.29 +0.5 499,297 - PGA1_c05060 0.29 +0.2 499,297 - PGA1_c05060 0.29 +0.0 499,297 - PGA1_c05060 0.29 +0.1 499,297 - PGA1_c05060 0.29 -1.7 499,297 - PGA1_c05060 0.29 -0.1 499,297 - PGA1_c05060 0.29 -1.1 499,297 - PGA1_c05060 0.29 +0.5 499,297 - PGA1_c05060 0.29 -0.5 499,297 - PGA1_c05060 0.29 -0.4 499,297 - PGA1_c05060 0.29 +0.9 499,297 - PGA1_c05060 0.29 +0.4 499,297 - PGA1_c05060 0.29 +0.2 499,297 - PGA1_c05060 0.29 -0.2 499,297 - PGA1_c05060 0.29 -1.8 499,306 + PGA1_c05060 0.31 -0.2 499,308 + PGA1_c05060 0.31 -0.9 499,352 + PGA1_c05060 0.37 +0.5 499,407 - PGA1_c05060 0.45 -0.7 499,449 + PGA1_c05060 0.51 -0.5 499,524 + PGA1_c05060 0.62 +0.4 499,524 + PGA1_c05060 0.62 -1.1 499,524 + PGA1_c05060 0.62 +0.6 499,530 + PGA1_c05060 0.63 -1.2 499,532 - PGA1_c05060 0.63 -0.5 499,545 + PGA1_c05060 0.65 -0.0 499,545 + PGA1_c05060 0.65 -0.5 499,545 + PGA1_c05060 0.65 +0.9 499,550 + PGA1_c05060 0.66 +0.6 499,550 + PGA1_c05060 0.66 +0.8 499,550 + PGA1_c05060 0.66 -1.9 499,550 + PGA1_c05060 0.66 -0.3 499,553 - PGA1_c05060 0.66 +1.3 499,558 - PGA1_c05060 0.67 +0.5 499,558 - PGA1_c05060 0.67 +1.2 499,558 - PGA1_c05060 0.67 -0.8 499,575 + PGA1_c05060 0.69 +1.9 499,610 + PGA1_c05060 0.74 -0.7 499,610 + PGA1_c05060 0.74 -0.2 499,654 - PGA1_c05060 0.80 +0.1 499,665 + PGA1_c05060 0.82 +0.4 499,683 - PGA1_c05060 0.85 +0.2 499,685 + PGA1_c05060 0.85 +0.1 499,685 + PGA1_c05060 0.85 +0.7 499,685 + PGA1_c05060 0.85 +0.5 499,685 + PGA1_c05060 0.85 -0.7 499,685 + PGA1_c05060 0.85 -0.0 499,685 + PGA1_c05060 0.85 -0.2 499,685 + PGA1_c05060 0.85 -0.3 499,685 + PGA1_c05060 0.85 +0.4 499,685 + PGA1_c05060 0.85 +0.5 499,685 + PGA1_c05060 0.85 -0.6 499,685 + PGA1_c05060 0.85 -0.4 499,685 + PGA1_c05060 0.85 -0.2 499,685 + PGA1_c05060 0.85 -0.7 499,685 + PGA1_c05060 0.85 -0.4 499,685 + PGA1_c05060 0.85 -0.4 499,685 + PGA1_c05060 0.85 -0.0 499,685 + PGA1_c05060 0.85 -1.6 499,685 + PGA1_c05060 0.85 +0.1 499,685 + PGA1_c05060 0.85 -0.6 499,685 + PGA1_c05060 0.85 +0.3 499,690 - PGA1_c05060 0.86 -0.0 499,693 - PGA1_c05060 0.86 +0.7 499,693 - PGA1_c05060 0.86 -1.7 499,693 - PGA1_c05060 0.86 -0.3 499,693 - PGA1_c05060 0.86 +0.0 499,693 - PGA1_c05060 0.86 +0.1 499,693 - PGA1_c05060 0.86 -0.5 499,693 - PGA1_c05060 0.86 -0.4 499,693 - PGA1_c05060 0.86 -1.5 499,693 - PGA1_c05060 0.86 +1.4 499,693 - PGA1_c05060 0.86 -0.8 499,693 - PGA1_c05060 0.86 +0.4 499,730 + +2.3 499,738 + +0.0 499,738 + -0.4 499,738 + +0.1 499,738 + -0.6 499,738 + -0.3 499,746 - +0.7 499,783 + -1.7 499,801 - +0.7 499,809 + -2.2 499,830 - +0.5 499,865 - -0.1 499,867 - -0.8 499,867 - -0.1 499,867 - -1.4 499,872 - -1.5 499,972 + PGA1_c05070 0.15 +1.4 499,977 + PGA1_c05070 0.15 -0.6 499,977 + PGA1_c05070 0.15 -1.6 499,982 + PGA1_c05070 0.16 -0.7 499,985 - PGA1_c05070 0.16 -0.3 500,040 + PGA1_c05070 0.21 -0.5 500,104 + PGA1_c05070 0.27 +0.2 500,114 + PGA1_c05070 0.28 -1.2 500,176 - PGA1_c05070 0.33 -1.8 500,211 + PGA1_c05070 0.36 -1.9 500,225 + PGA1_c05070 0.38 -0.4 500,225 + PGA1_c05070 0.38 -1.7 500,293 + PGA1_c05070 0.44 -0.4 500,293 + PGA1_c05070 0.44 -2.1 500,359 + PGA1_c05070 0.50 +0.1 500,367 - PGA1_c05070 0.51 -0.3 500,449 + PGA1_c05070 0.58 +0.1 500,449 + PGA1_c05070 0.58 -3.1 500,457 - PGA1_c05070 0.59 -0.9 500,520 + PGA1_c05070 0.65 -0.8 500,543 + PGA1_c05070 0.67 -4.2 500,589 + PGA1_c05070 0.71 -0.0 500,611 + PGA1_c05070 0.73 -3.1 500,622 + PGA1_c05070 0.74 -0.4 500,631 + PGA1_c05070 0.75 -2.1 500,640 - PGA1_c05070 0.76 -0.5 500,684 - PGA1_c05070 0.80 -0.4 500,713 + PGA1_c05070 0.82 -0.9 500,740 + PGA1_c05070 0.85 -1.7 500,748 - PGA1_c05070 0.85 -0.7 500,748 - PGA1_c05070 0.85 -0.8 500,750 + PGA1_c05070 0.86 -0.8 500,787 + PGA1_c05070 0.89 -2.5
Or see this region's nucleotide sequence