Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00360

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00350 and PGA1_65p00360 are separated by 148 nucleotidesPGA1_65p00360 and PGA1_65p00370 are separated by 77 nucleotidesPGA1_65p00370 and PGA1_65p00380 overlap by 4 nucleotides PGA1_65p00350: PGA1_65p00350 - hemolysin-like protein, at 46,966 to 48,567 _65p00350 PGA1_65p00360: PGA1_65p00360 - glycosyl transferase domain-containing protein, at 48,716 to 51,433 _65p00360 PGA1_65p00370: PGA1_65p00370 - putative glycosyl transferase, at 51,511 to 52,428 _65p00370 PGA1_65p00380: PGA1_65p00380 - hypothetical protein, at 52,425 to 53,744 _65p00380 Position (kb) 48 49 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3at 47.764 kb on + strand, within PGA1_65p00350at 48.034 kb on + strand, within PGA1_65p00350at 48.034 kb on + strand, within PGA1_65p00350at 48.184 kb on - strand, within PGA1_65p00350at 48.272 kb on - strand, within PGA1_65p00350at 48.431 kb on - strandat 48.431 kb on - strandat 48.511 kb on - strandat 48.535 kb on + strandat 48.584 kb on - strandat 48.590 kb on - strandat 48.714 kb on + strandat 48.714 kb on + strandat 48.721 kb on - strandat 48.722 kb on - strandat 48.722 kb on - strandat 48.722 kb on - strandat 48.886 kb on + strandat 49.051 kb on + strand, within PGA1_65p00360at 49.059 kb on - strand, within PGA1_65p00360at 49.097 kb on + strand, within PGA1_65p00360at 49.153 kb on + strand, within PGA1_65p00360at 49.368 kb on - strand, within PGA1_65p00360at 49.398 kb on - strand, within PGA1_65p00360at 49.455 kb on + strand, within PGA1_65p00360at 49.455 kb on + strand, within PGA1_65p00360at 49.809 kb on - strand, within PGA1_65p00360at 49.818 kb on - strand, within PGA1_65p00360at 49.818 kb on - strand, within PGA1_65p00360at 49.820 kb on + strand, within PGA1_65p00360at 49.865 kb on - strand, within PGA1_65p00360at 50.095 kb on + strand, within PGA1_65p00360at 50.118 kb on - strand, within PGA1_65p00360at 50.464 kb on - strand, within PGA1_65p00360at 50.531 kb on + strand, within PGA1_65p00360at 50.631 kb on - strand, within PGA1_65p00360at 50.908 kb on + strand, within PGA1_65p00360at 51.076 kb on + strand, within PGA1_65p00360at 51.135 kb on - strand, within PGA1_65p00360at 51.146 kb on + strand, within PGA1_65p00360at 51.337 kb on + strandat 51.481 kb on + strandat 51.557 kb on - strandat 51.665 kb on - strand, within PGA1_65p00370at 51.670 kb on - strand, within PGA1_65p00370at 51.675 kb on - strand, within PGA1_65p00370at 51.675 kb on - strand, within PGA1_65p00370at 51.736 kb on + strand, within PGA1_65p00370at 51.800 kb on - strand, within PGA1_65p00370at 51.817 kb on + strand, within PGA1_65p00370at 51.830 kb on + strand, within PGA1_65p00370at 51.913 kb on - strand, within PGA1_65p00370at 51.965 kb on - strand, within PGA1_65p00370at 51.990 kb on - strand, within PGA1_65p00370at 52.135 kb on - strand, within PGA1_65p00370at 52.135 kb on - strand, within PGA1_65p00370at 52.344 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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47,764 + PGA1_65p00350 0.50 +0.8
48,034 + PGA1_65p00350 0.67 +0.3
48,034 + PGA1_65p00350 0.67 -0.5
48,184 - PGA1_65p00350 0.76 -0.3
48,272 - PGA1_65p00350 0.82 -0.7
48,431 - -0.1
48,431 - +0.3
48,511 - +0.3
48,535 + +2.3
48,584 - +0.5
48,590 - +1.1
48,714 + -2.1
48,714 + +0.5
48,721 - -0.3
48,722 - +1.1
48,722 - +0.3
48,722 - +1.4
48,886 + +1.3
49,051 + PGA1_65p00360 0.12 -2.7
49,059 - PGA1_65p00360 0.13 -0.2
49,097 + PGA1_65p00360 0.14 -1.1
49,153 + PGA1_65p00360 0.16 +1.0
49,368 - PGA1_65p00360 0.24 -1.7
49,398 - PGA1_65p00360 0.25 -0.3
49,455 + PGA1_65p00360 0.27 -2.7
49,455 + PGA1_65p00360 0.27 -0.7
49,809 - PGA1_65p00360 0.40 +0.3
49,818 - PGA1_65p00360 0.41 -1.7
49,818 - PGA1_65p00360 0.41 -1.2
49,820 + PGA1_65p00360 0.41 -1.7
49,865 - PGA1_65p00360 0.42 -1.7
50,095 + PGA1_65p00360 0.51 +1.1
50,118 - PGA1_65p00360 0.52 +1.8
50,464 - PGA1_65p00360 0.64 +0.3
50,531 + PGA1_65p00360 0.67 +1.3
50,631 - PGA1_65p00360 0.70 -1.0
50,908 + PGA1_65p00360 0.81 -0.7
51,076 + PGA1_65p00360 0.87 +1.8
51,135 - PGA1_65p00360 0.89 +0.3
51,146 + PGA1_65p00360 0.89 -1.2
51,337 + -1.3
51,481 + -0.5
51,557 - -0.1
51,665 - PGA1_65p00370 0.17 -1.3
51,670 - PGA1_65p00370 0.17 +1.6
51,675 - PGA1_65p00370 0.18 +1.0
51,675 - PGA1_65p00370 0.18 -0.9
51,736 + PGA1_65p00370 0.25 +1.3
51,800 - PGA1_65p00370 0.31 +0.3
51,817 + PGA1_65p00370 0.33 +3.1
51,830 + PGA1_65p00370 0.35 -0.6
51,913 - PGA1_65p00370 0.44 +0.3
51,965 - PGA1_65p00370 0.49 +0.6
51,990 - PGA1_65p00370 0.52 +2.0
52,135 - PGA1_65p00370 0.68 +0.3
52,135 - PGA1_65p00370 0.68 +1.8
52,344 - +0.8

Or see this region's nucleotide sequence