Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16440

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16420 and PGA1_c16430 overlap by 4 nucleotidesPGA1_c16430 and PGA1_c16440 are separated by 92 nucleotidesPGA1_c16440 and PGA1_c16450 are separated by 86 nucleotidesPGA1_c16450 and PGA1_c16460 overlap by 1 nucleotides PGA1_c16420: PGA1_c16420 - putative phospholipase / carboxylesterase, at 1,702,873 to 1,703,538 _c16420 PGA1_c16430: PGA1_c16430 - putative DNA repair protein, at 1,703,535 to 1,704,203 _c16430 PGA1_c16440: PGA1_c16440 - MFS transporter, at 1,704,296 to 1,705,522 _c16440 PGA1_c16450: PGA1_c16450 - Phytoene/squalene synthetase, at 1,705,609 to 1,706,388 _c16450 PGA1_c16460: PGA1_c16460 - 2-isopropylmalate synthase/homocitrate synthase-like protein, at 1,706,388 to 1,708,019 _c16460 Position (kb) 1704 1705 1706Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1703.392 kb on + strand, within PGA1_c16420at 1703.520 kb on - strandat 1703.556 kb on - strandat 1703.597 kb on - strandat 1703.644 kb on + strand, within PGA1_c16430at 1703.644 kb on + strand, within PGA1_c16430at 1703.683 kb on + strand, within PGA1_c16430at 1703.691 kb on - strand, within PGA1_c16430at 1703.691 kb on - strand, within PGA1_c16430at 1703.709 kb on + strand, within PGA1_c16430at 1703.819 kb on + strand, within PGA1_c16430at 1703.827 kb on - strand, within PGA1_c16430at 1703.827 kb on - strand, within PGA1_c16430at 1703.851 kb on + strand, within PGA1_c16430at 1703.857 kb on - strand, within PGA1_c16430at 1703.888 kb on + strand, within PGA1_c16430at 1703.888 kb on + strand, within PGA1_c16430at 1703.940 kb on + strand, within PGA1_c16430at 1704.061 kb on + strand, within PGA1_c16430at 1704.071 kb on + strand, within PGA1_c16430at 1704.072 kb on - strand, within PGA1_c16430at 1704.252 kb on + strandat 1704.266 kb on - strandat 1704.410 kb on - strandat 1704.419 kb on + strand, within PGA1_c16440at 1704.487 kb on - strand, within PGA1_c16440at 1704.520 kb on + strand, within PGA1_c16440at 1704.567 kb on + strand, within PGA1_c16440at 1704.756 kb on - strand, within PGA1_c16440at 1704.796 kb on - strand, within PGA1_c16440at 1704.917 kb on - strand, within PGA1_c16440at 1704.924 kb on + strand, within PGA1_c16440at 1704.985 kb on - strand, within PGA1_c16440at 1705.278 kb on + strand, within PGA1_c16440at 1705.286 kb on - strand, within PGA1_c16440at 1705.298 kb on + strand, within PGA1_c16440at 1705.337 kb on - strand, within PGA1_c16440at 1705.398 kb on + strand, within PGA1_c16440at 1705.415 kb on + strandat 1705.488 kb on - strandat 1705.498 kb on + strandat 1705.607 kb on + strandat 1705.613 kb on - strandat 1705.636 kb on + strandat 1705.649 kb on - strandat 1705.839 kb on + strand, within PGA1_c16450at 1706.105 kb on + strand, within PGA1_c16450at 1706.230 kb on + strand, within PGA1_c16450at 1706.230 kb on + strand, within PGA1_c16450at 1706.232 kb on - strand, within PGA1_c16450

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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1,703,392 + PGA1_c16420 0.78 +1.2
1,703,520 - +0.3
1,703,556 - -0.3
1,703,597 - +0.3
1,703,644 + PGA1_c16430 0.16 +2.1
1,703,644 + PGA1_c16430 0.16 +0.5
1,703,683 + PGA1_c16430 0.22 +0.4
1,703,691 - PGA1_c16430 0.23 +0.2
1,703,691 - PGA1_c16430 0.23 +0.0
1,703,709 + PGA1_c16430 0.26 +2.1
1,703,819 + PGA1_c16430 0.42 +0.1
1,703,827 - PGA1_c16430 0.44 -0.9
1,703,827 - PGA1_c16430 0.44 +0.1
1,703,851 + PGA1_c16430 0.47 +2.2
1,703,857 - PGA1_c16430 0.48 -0.2
1,703,888 + PGA1_c16430 0.53 +0.8
1,703,888 + PGA1_c16430 0.53 +0.9
1,703,940 + PGA1_c16430 0.61 -1.2
1,704,061 + PGA1_c16430 0.79 -2.7
1,704,071 + PGA1_c16430 0.80 -1.5
1,704,072 - PGA1_c16430 0.80 +1.1
1,704,252 + -1.8
1,704,266 - -0.2
1,704,410 - -1.0
1,704,419 + PGA1_c16440 0.10 -0.8
1,704,487 - PGA1_c16440 0.16 -0.7
1,704,520 + PGA1_c16440 0.18 +0.1
1,704,567 + PGA1_c16440 0.22 -0.9
1,704,756 - PGA1_c16440 0.37 -0.9
1,704,796 - PGA1_c16440 0.41 -0.9
1,704,917 - PGA1_c16440 0.51 -3.0
1,704,924 + PGA1_c16440 0.51 +0.7
1,704,985 - PGA1_c16440 0.56 -1.1
1,705,278 + PGA1_c16440 0.80 +0.1
1,705,286 - PGA1_c16440 0.81 -2.1
1,705,298 + PGA1_c16440 0.82 -0.8
1,705,337 - PGA1_c16440 0.85 -0.3
1,705,398 + PGA1_c16440 0.90 -1.0
1,705,415 + -0.6
1,705,488 - +0.9
1,705,498 + +1.8
1,705,607 + -1.3
1,705,613 - +0.2
1,705,636 + -1.9
1,705,649 - -1.7
1,705,839 + PGA1_c16450 0.29 +0.1
1,706,105 + PGA1_c16450 0.64 -2.7
1,706,230 + PGA1_c16450 0.80 +1.2
1,706,230 + PGA1_c16450 0.80 +0.1
1,706,232 - PGA1_c16450 0.80 -1.7

Or see this region's nucleotide sequence