Experiment: m.b. Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13180 and PGA1_c13190 are separated by 11 nucleotides PGA1_c13190 and PGA1_c13200 are separated by 9 nucleotides PGA1_c13200 and PGA1_c13210 are separated by 116 nucleotides
PGA1_c13180: PGA1_c13180 - ABC transporter for D-Sorbitol, ATPase component (from data) , at 1,363,835 to 1,364,839
_c13180
PGA1_c13190: PGA1_c13190 - ABC transporter for D-Sorbitol, permease component 1 (from data) , at 1,364,851 to 1,365,681
_c13190
PGA1_c13200: PGA1_c13200 - ABC transporter for D-Sorbitol, permease component 2 (from data) , at 1,365,691 to 1,366,557
_c13200
PGA1_c13210: PGA1_c13210 - ABC transporter for D-Sorbitol, periplasmic substrate-binding component (from data) , at 1,366,674 to 1,367,975
_c13210
Position (kb)
1365
1366
1367 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1364.823 kb on + strand at 1364.831 kb on - strand at 1364.831 kb on - strand at 1364.833 kb on + strand at 1364.841 kb on - strand at 1364.842 kb on - strand at 1364.869 kb on + strand at 1364.869 kb on + strand at 1364.869 kb on + strand at 1364.877 kb on - strand at 1364.877 kb on - strand at 1364.902 kb on - strand at 1364.919 kb on - strand at 1364.953 kb on - strand, within PGA1_c13190 at 1364.957 kb on + strand, within PGA1_c13190 at 1364.957 kb on + strand, within PGA1_c13190 at 1364.960 kb on - strand, within PGA1_c13190 at 1364.965 kb on - strand, within PGA1_c13190 at 1364.970 kb on - strand, within PGA1_c13190 at 1365.061 kb on - strand, within PGA1_c13190 at 1365.082 kb on + strand, within PGA1_c13190 at 1365.083 kb on + strand, within PGA1_c13190 at 1365.119 kb on + strand, within PGA1_c13190 at 1365.141 kb on + strand, within PGA1_c13190 at 1365.145 kb on + strand, within PGA1_c13190 at 1365.149 kb on + strand, within PGA1_c13190 at 1365.172 kb on - strand, within PGA1_c13190 at 1365.199 kb on + strand, within PGA1_c13190 at 1365.199 kb on + strand, within PGA1_c13190 at 1365.199 kb on + strand, within PGA1_c13190 at 1365.207 kb on - strand, within PGA1_c13190 at 1365.310 kb on + strand, within PGA1_c13190 at 1365.364 kb on - strand, within PGA1_c13190 at 1365.551 kb on + strand, within PGA1_c13190 at 1365.559 kb on - strand, within PGA1_c13190 at 1365.561 kb on + strand, within PGA1_c13190 at 1365.569 kb on + strand, within PGA1_c13190 at 1365.580 kb on + strand, within PGA1_c13190 at 1365.580 kb on + strand, within PGA1_c13190 at 1365.590 kb on + strand, within PGA1_c13190 at 1365.590 kb on + strand, within PGA1_c13190 at 1365.626 kb on + strand at 1365.626 kb on + strand at 1365.626 kb on + strand at 1365.626 kb on + strand at 1365.626 kb on + strand at 1365.626 kb on + strand at 1365.626 kb on + strand at 1365.626 kb on + strand at 1365.626 kb on + strand at 1365.634 kb on - strand at 1365.634 kb on - strand at 1365.634 kb on - strand at 1365.634 kb on - strand at 1365.634 kb on - strand at 1365.634 kb on - strand at 1365.634 kb on - strand at 1365.639 kb on - strand at 1365.649 kb on - strand at 1365.690 kb on + strand at 1365.826 kb on + strand, within PGA1_c13200 at 1365.849 kb on + strand, within PGA1_c13200 at 1365.995 kb on + strand, within PGA1_c13200 at 1365.995 kb on + strand, within PGA1_c13200 at 1366.003 kb on - strand, within PGA1_c13200 at 1366.003 kb on - strand, within PGA1_c13200 at 1366.003 kb on - strand, within PGA1_c13200 at 1366.039 kb on + strand, within PGA1_c13200 at 1366.047 kb on - strand, within PGA1_c13200 at 1366.100 kb on + strand, within PGA1_c13200 at 1366.100 kb on + strand, within PGA1_c13200 at 1366.103 kb on + strand, within PGA1_c13200 at 1366.117 kb on + strand, within PGA1_c13200 at 1366.197 kb on + strand, within PGA1_c13200 at 1366.311 kb on - strand, within PGA1_c13200 at 1366.344 kb on - strand, within PGA1_c13200 at 1366.347 kb on + strand, within PGA1_c13200 at 1366.355 kb on - strand, within PGA1_c13200 at 1366.401 kb on + strand, within PGA1_c13200 at 1366.411 kb on + strand, within PGA1_c13200 at 1366.411 kb on + strand, within PGA1_c13200 at 1366.424 kb on - strand, within PGA1_c13200 at 1366.427 kb on + strand, within PGA1_c13200 at 1366.480 kb on - strand at 1366.629 kb on + strand at 1366.633 kb on - strand at 1366.653 kb on + strand at 1366.661 kb on - strand at 1366.688 kb on + strand at 1366.705 kb on - strand at 1366.717 kb on + strand at 1366.778 kb on - strand at 1366.778 kb on - strand at 1366.778 kb on - strand at 1366.784 kb on + strand at 1366.821 kb on - strand, within PGA1_c13210 at 1366.868 kb on - strand, within PGA1_c13210 at 1366.889 kb on - strand, within PGA1_c13210 at 1366.913 kb on - strand, within PGA1_c13210 at 1366.920 kb on - strand, within PGA1_c13210 at 1366.928 kb on - strand, within PGA1_c13210 at 1366.991 kb on + strand, within PGA1_c13210 at 1366.991 kb on + strand, within PGA1_c13210 at 1366.999 kb on - strand, within PGA1_c13210 at 1366.999 kb on - strand, within PGA1_c13210 at 1367.021 kb on + strand, within PGA1_c13210 at 1367.111 kb on - strand, within PGA1_c13210 at 1367.212 kb on + strand, within PGA1_c13210 at 1367.212 kb on + strand, within PGA1_c13210 at 1367.322 kb on + strand, within PGA1_c13210 at 1367.330 kb on - strand, within PGA1_c13210 at 1367.402 kb on - strand, within PGA1_c13210 at 1367.510 kb on - strand, within PGA1_c13210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM remove 1,364,823 + -0.4 1,364,831 - -0.5 1,364,831 - +0.5 1,364,833 + +0.4 1,364,841 - +0.2 1,364,842 - +0.0 1,364,869 + +0.6 1,364,869 + -0.1 1,364,869 + +3.5 1,364,877 - -1.2 1,364,877 - +0.6 1,364,902 - -0.4 1,364,919 - -0.1 1,364,953 - PGA1_c13190 0.12 -0.1 1,364,957 + PGA1_c13190 0.13 -0.7 1,364,957 + PGA1_c13190 0.13 -0.1 1,364,960 - PGA1_c13190 0.13 -0.3 1,364,965 - PGA1_c13190 0.14 +0.2 1,364,970 - PGA1_c13190 0.14 -0.6 1,365,061 - PGA1_c13190 0.25 +0.9 1,365,082 + PGA1_c13190 0.28 -2.0 1,365,083 + PGA1_c13190 0.28 -2.9 1,365,119 + PGA1_c13190 0.32 -0.2 1,365,141 + PGA1_c13190 0.35 +0.6 1,365,145 + PGA1_c13190 0.35 -2.6 1,365,149 + PGA1_c13190 0.36 -0.7 1,365,172 - PGA1_c13190 0.39 -0.6 1,365,199 + PGA1_c13190 0.42 +0.6 1,365,199 + PGA1_c13190 0.42 -1.9 1,365,199 + PGA1_c13190 0.42 +0.2 1,365,207 - PGA1_c13190 0.43 +0.4 1,365,310 + PGA1_c13190 0.55 -0.7 1,365,364 - PGA1_c13190 0.62 -0.9 1,365,551 + PGA1_c13190 0.84 +0.6 1,365,559 - PGA1_c13190 0.85 +1.5 1,365,561 + PGA1_c13190 0.85 -1.3 1,365,569 + PGA1_c13190 0.86 +0.7 1,365,580 + PGA1_c13190 0.88 -0.2 1,365,580 + PGA1_c13190 0.88 +0.1 1,365,590 + PGA1_c13190 0.89 +0.6 1,365,590 + PGA1_c13190 0.89 -0.4 1,365,626 + +1.9 1,365,626 + +0.4 1,365,626 + -2.0 1,365,626 + +0.4 1,365,626 + -1.1 1,365,626 + -0.3 1,365,626 + -1.2 1,365,626 + +0.6 1,365,626 + -0.1 1,365,634 - -0.6 1,365,634 - +0.7 1,365,634 - -1.9 1,365,634 - +0.2 1,365,634 - +0.0 1,365,634 - +0.3 1,365,634 - +0.6 1,365,639 - +0.6 1,365,649 - +1.5 1,365,690 + -0.5 1,365,826 + PGA1_c13200 0.16 -0.1 1,365,849 + PGA1_c13200 0.18 -0.3 1,365,995 + PGA1_c13200 0.35 +0.0 1,365,995 + PGA1_c13200 0.35 +0.6 1,366,003 - PGA1_c13200 0.36 +0.5 1,366,003 - PGA1_c13200 0.36 -0.0 1,366,003 - PGA1_c13200 0.36 +0.5 1,366,039 + PGA1_c13200 0.40 +2.5 1,366,047 - PGA1_c13200 0.41 -0.2 1,366,100 + PGA1_c13200 0.47 -0.2 1,366,100 + PGA1_c13200 0.47 -0.3 1,366,103 + PGA1_c13200 0.48 +0.9 1,366,117 + PGA1_c13200 0.49 +0.1 1,366,197 + PGA1_c13200 0.58 +1.5 1,366,311 - PGA1_c13200 0.72 +1.6 1,366,344 - PGA1_c13200 0.75 -1.6 1,366,347 + PGA1_c13200 0.76 +0.1 1,366,355 - PGA1_c13200 0.77 -0.1 1,366,401 + PGA1_c13200 0.82 +1.0 1,366,411 + PGA1_c13200 0.83 +0.3 1,366,411 + PGA1_c13200 0.83 +1.0 1,366,424 - PGA1_c13200 0.85 +1.6 1,366,427 + PGA1_c13200 0.85 +0.3 1,366,480 - -1.1 1,366,629 + -1.0 1,366,633 - +0.0 1,366,653 + +1.7 1,366,661 - -0.4 1,366,688 + -0.9 1,366,705 - -2.9 1,366,717 + -0.3 1,366,778 - +0.8 1,366,778 - -1.0 1,366,778 - -0.4 1,366,784 + -0.4 1,366,821 - PGA1_c13210 0.11 +1.2 1,366,868 - PGA1_c13210 0.15 +0.1 1,366,889 - PGA1_c13210 0.17 -0.9 1,366,913 - PGA1_c13210 0.18 -0.3 1,366,920 - PGA1_c13210 0.19 -0.5 1,366,928 - PGA1_c13210 0.20 -1.3 1,366,991 + PGA1_c13210 0.24 +0.0 1,366,991 + PGA1_c13210 0.24 +1.0 1,366,999 - PGA1_c13210 0.25 -0.6 1,366,999 - PGA1_c13210 0.25 +0.6 1,367,021 + PGA1_c13210 0.27 -0.3 1,367,111 - PGA1_c13210 0.34 -0.7 1,367,212 + PGA1_c13210 0.41 -1.9 1,367,212 + PGA1_c13210 0.41 +0.9 1,367,322 + PGA1_c13210 0.50 -1.5 1,367,330 - PGA1_c13210 0.50 -0.6 1,367,402 - PGA1_c13210 0.56 +0.5 1,367,510 - PGA1_c13210 0.64 -0.2
Or see this region's nucleotide sequence