Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13200

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13180 and PGA1_c13190 are separated by 11 nucleotidesPGA1_c13190 and PGA1_c13200 are separated by 9 nucleotidesPGA1_c13200 and PGA1_c13210 are separated by 116 nucleotides PGA1_c13180: PGA1_c13180 - ABC transporter for D-Sorbitol, ATPase component (from data), at 1,363,835 to 1,364,839 _c13180 PGA1_c13190: PGA1_c13190 - ABC transporter for D-Sorbitol, permease component 1 (from data), at 1,364,851 to 1,365,681 _c13190 PGA1_c13200: PGA1_c13200 - ABC transporter for D-Sorbitol, permease component 2 (from data), at 1,365,691 to 1,366,557 _c13200 PGA1_c13210: PGA1_c13210 - ABC transporter for D-Sorbitol, periplasmic substrate-binding component (from data), at 1,366,674 to 1,367,975 _c13210 Position (kb) 1365 1366 1367Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1364.823 kb on + strandat 1364.831 kb on - strandat 1364.831 kb on - strandat 1364.833 kb on + strandat 1364.841 kb on - strandat 1364.842 kb on - strandat 1364.869 kb on + strandat 1364.869 kb on + strandat 1364.869 kb on + strandat 1364.877 kb on - strandat 1364.877 kb on - strandat 1364.902 kb on - strandat 1364.919 kb on - strandat 1364.953 kb on - strand, within PGA1_c13190at 1364.957 kb on + strand, within PGA1_c13190at 1364.957 kb on + strand, within PGA1_c13190at 1364.960 kb on - strand, within PGA1_c13190at 1364.965 kb on - strand, within PGA1_c13190at 1364.970 kb on - strand, within PGA1_c13190at 1365.061 kb on - strand, within PGA1_c13190at 1365.082 kb on + strand, within PGA1_c13190at 1365.083 kb on + strand, within PGA1_c13190at 1365.119 kb on + strand, within PGA1_c13190at 1365.141 kb on + strand, within PGA1_c13190at 1365.145 kb on + strand, within PGA1_c13190at 1365.149 kb on + strand, within PGA1_c13190at 1365.172 kb on - strand, within PGA1_c13190at 1365.199 kb on + strand, within PGA1_c13190at 1365.199 kb on + strand, within PGA1_c13190at 1365.199 kb on + strand, within PGA1_c13190at 1365.207 kb on - strand, within PGA1_c13190at 1365.310 kb on + strand, within PGA1_c13190at 1365.364 kb on - strand, within PGA1_c13190at 1365.551 kb on + strand, within PGA1_c13190at 1365.559 kb on - strand, within PGA1_c13190at 1365.561 kb on + strand, within PGA1_c13190at 1365.569 kb on + strand, within PGA1_c13190at 1365.580 kb on + strand, within PGA1_c13190at 1365.580 kb on + strand, within PGA1_c13190at 1365.590 kb on + strand, within PGA1_c13190at 1365.590 kb on + strand, within PGA1_c13190at 1365.626 kb on + strandat 1365.626 kb on + strandat 1365.626 kb on + strandat 1365.626 kb on + strandat 1365.626 kb on + strandat 1365.626 kb on + strandat 1365.626 kb on + strandat 1365.626 kb on + strandat 1365.626 kb on + strandat 1365.634 kb on - strandat 1365.634 kb on - strandat 1365.634 kb on - strandat 1365.634 kb on - strandat 1365.634 kb on - strandat 1365.634 kb on - strandat 1365.634 kb on - strandat 1365.639 kb on - strandat 1365.649 kb on - strandat 1365.690 kb on + strandat 1365.826 kb on + strand, within PGA1_c13200at 1365.849 kb on + strand, within PGA1_c13200at 1365.995 kb on + strand, within PGA1_c13200at 1365.995 kb on + strand, within PGA1_c13200at 1366.003 kb on - strand, within PGA1_c13200at 1366.003 kb on - strand, within PGA1_c13200at 1366.003 kb on - strand, within PGA1_c13200at 1366.039 kb on + strand, within PGA1_c13200at 1366.047 kb on - strand, within PGA1_c13200at 1366.100 kb on + strand, within PGA1_c13200at 1366.100 kb on + strand, within PGA1_c13200at 1366.103 kb on + strand, within PGA1_c13200at 1366.117 kb on + strand, within PGA1_c13200at 1366.197 kb on + strand, within PGA1_c13200at 1366.311 kb on - strand, within PGA1_c13200at 1366.344 kb on - strand, within PGA1_c13200at 1366.347 kb on + strand, within PGA1_c13200at 1366.355 kb on - strand, within PGA1_c13200at 1366.401 kb on + strand, within PGA1_c13200at 1366.411 kb on + strand, within PGA1_c13200at 1366.411 kb on + strand, within PGA1_c13200at 1366.424 kb on - strand, within PGA1_c13200at 1366.427 kb on + strand, within PGA1_c13200at 1366.480 kb on - strandat 1366.629 kb on + strandat 1366.633 kb on - strandat 1366.653 kb on + strandat 1366.661 kb on - strandat 1366.688 kb on + strandat 1366.705 kb on - strandat 1366.717 kb on + strandat 1366.778 kb on - strandat 1366.778 kb on - strandat 1366.778 kb on - strandat 1366.784 kb on + strandat 1366.821 kb on - strand, within PGA1_c13210at 1366.868 kb on - strand, within PGA1_c13210at 1366.889 kb on - strand, within PGA1_c13210at 1366.913 kb on - strand, within PGA1_c13210at 1366.920 kb on - strand, within PGA1_c13210at 1366.928 kb on - strand, within PGA1_c13210at 1366.991 kb on + strand, within PGA1_c13210at 1366.991 kb on + strand, within PGA1_c13210at 1366.999 kb on - strand, within PGA1_c13210at 1366.999 kb on - strand, within PGA1_c13210at 1367.021 kb on + strand, within PGA1_c13210at 1367.111 kb on - strand, within PGA1_c13210at 1367.212 kb on + strand, within PGA1_c13210at 1367.212 kb on + strand, within PGA1_c13210at 1367.322 kb on + strand, within PGA1_c13210at 1367.330 kb on - strand, within PGA1_c13210at 1367.402 kb on - strand, within PGA1_c13210at 1367.510 kb on - strand, within PGA1_c13210

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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1,364,823 + -0.4
1,364,831 - -0.5
1,364,831 - +0.5
1,364,833 + +0.4
1,364,841 - +0.2
1,364,842 - +0.0
1,364,869 + +0.6
1,364,869 + -0.1
1,364,869 + +3.5
1,364,877 - -1.2
1,364,877 - +0.6
1,364,902 - -0.4
1,364,919 - -0.1
1,364,953 - PGA1_c13190 0.12 -0.1
1,364,957 + PGA1_c13190 0.13 -0.7
1,364,957 + PGA1_c13190 0.13 -0.1
1,364,960 - PGA1_c13190 0.13 -0.3
1,364,965 - PGA1_c13190 0.14 +0.2
1,364,970 - PGA1_c13190 0.14 -0.6
1,365,061 - PGA1_c13190 0.25 +0.9
1,365,082 + PGA1_c13190 0.28 -2.0
1,365,083 + PGA1_c13190 0.28 -2.9
1,365,119 + PGA1_c13190 0.32 -0.2
1,365,141 + PGA1_c13190 0.35 +0.6
1,365,145 + PGA1_c13190 0.35 -2.6
1,365,149 + PGA1_c13190 0.36 -0.7
1,365,172 - PGA1_c13190 0.39 -0.6
1,365,199 + PGA1_c13190 0.42 +0.6
1,365,199 + PGA1_c13190 0.42 -1.9
1,365,199 + PGA1_c13190 0.42 +0.2
1,365,207 - PGA1_c13190 0.43 +0.4
1,365,310 + PGA1_c13190 0.55 -0.7
1,365,364 - PGA1_c13190 0.62 -0.9
1,365,551 + PGA1_c13190 0.84 +0.6
1,365,559 - PGA1_c13190 0.85 +1.5
1,365,561 + PGA1_c13190 0.85 -1.3
1,365,569 + PGA1_c13190 0.86 +0.7
1,365,580 + PGA1_c13190 0.88 -0.2
1,365,580 + PGA1_c13190 0.88 +0.1
1,365,590 + PGA1_c13190 0.89 +0.6
1,365,590 + PGA1_c13190 0.89 -0.4
1,365,626 + +1.9
1,365,626 + +0.4
1,365,626 + -2.0
1,365,626 + +0.4
1,365,626 + -1.1
1,365,626 + -0.3
1,365,626 + -1.2
1,365,626 + +0.6
1,365,626 + -0.1
1,365,634 - -0.6
1,365,634 - +0.7
1,365,634 - -1.9
1,365,634 - +0.2
1,365,634 - +0.0
1,365,634 - +0.3
1,365,634 - +0.6
1,365,639 - +0.6
1,365,649 - +1.5
1,365,690 + -0.5
1,365,826 + PGA1_c13200 0.16 -0.1
1,365,849 + PGA1_c13200 0.18 -0.3
1,365,995 + PGA1_c13200 0.35 +0.0
1,365,995 + PGA1_c13200 0.35 +0.6
1,366,003 - PGA1_c13200 0.36 +0.5
1,366,003 - PGA1_c13200 0.36 -0.0
1,366,003 - PGA1_c13200 0.36 +0.5
1,366,039 + PGA1_c13200 0.40 +2.5
1,366,047 - PGA1_c13200 0.41 -0.2
1,366,100 + PGA1_c13200 0.47 -0.2
1,366,100 + PGA1_c13200 0.47 -0.3
1,366,103 + PGA1_c13200 0.48 +0.9
1,366,117 + PGA1_c13200 0.49 +0.1
1,366,197 + PGA1_c13200 0.58 +1.5
1,366,311 - PGA1_c13200 0.72 +1.6
1,366,344 - PGA1_c13200 0.75 -1.6
1,366,347 + PGA1_c13200 0.76 +0.1
1,366,355 - PGA1_c13200 0.77 -0.1
1,366,401 + PGA1_c13200 0.82 +1.0
1,366,411 + PGA1_c13200 0.83 +0.3
1,366,411 + PGA1_c13200 0.83 +1.0
1,366,424 - PGA1_c13200 0.85 +1.6
1,366,427 + PGA1_c13200 0.85 +0.3
1,366,480 - -1.1
1,366,629 + -1.0
1,366,633 - +0.0
1,366,653 + +1.7
1,366,661 - -0.4
1,366,688 + -0.9
1,366,705 - -2.9
1,366,717 + -0.3
1,366,778 - +0.8
1,366,778 - -1.0
1,366,778 - -0.4
1,366,784 + -0.4
1,366,821 - PGA1_c13210 0.11 +1.2
1,366,868 - PGA1_c13210 0.15 +0.1
1,366,889 - PGA1_c13210 0.17 -0.9
1,366,913 - PGA1_c13210 0.18 -0.3
1,366,920 - PGA1_c13210 0.19 -0.5
1,366,928 - PGA1_c13210 0.20 -1.3
1,366,991 + PGA1_c13210 0.24 +0.0
1,366,991 + PGA1_c13210 0.24 +1.0
1,366,999 - PGA1_c13210 0.25 -0.6
1,366,999 - PGA1_c13210 0.25 +0.6
1,367,021 + PGA1_c13210 0.27 -0.3
1,367,111 - PGA1_c13210 0.34 -0.7
1,367,212 + PGA1_c13210 0.41 -1.9
1,367,212 + PGA1_c13210 0.41 +0.9
1,367,322 + PGA1_c13210 0.50 -1.5
1,367,330 - PGA1_c13210 0.50 -0.6
1,367,402 - PGA1_c13210 0.56 +0.5
1,367,510 - PGA1_c13210 0.64 -0.2

Or see this region's nucleotide sequence