Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0714 and Sama_0715 are separated by 56 nucleotides Sama_0715 and Sama_0716 are separated by 75 nucleotides Sama_0716 and Sama_0717 are separated by 85 nucleotides
Sama_0714: Sama_0714 - hypothetical protein (RefSeq), at 875,229 to 879,392
_0714
Sama_0715: Sama_0715 - hypothetical protein (RefSeq), at 879,449 to 879,919
_0715
Sama_0716: Sama_0716 - hypothetical protein (RefSeq), at 879,995 to 880,399
_0716
Sama_0717: Sama_0717 - hypothetical protein (RefSeq), at 880,485 to 882,251
_0717
Position (kb) 879
880 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 878.528 kb on - strand, within Sama_0714 at 878.528 kb on - strand, within Sama_0714 at 878.562 kb on - strand, within Sama_0714 at 878.582 kb on + strand, within Sama_0714 at 878.582 kb on + strand, within Sama_0714 at 878.582 kb on + strand, within Sama_0714 at 878.583 kb on - strand, within Sama_0714 at 878.613 kb on - strand, within Sama_0714 at 878.613 kb on - strand, within Sama_0714 at 878.662 kb on + strand, within Sama_0714 at 878.662 kb on + strand, within Sama_0714 at 878.663 kb on - strand, within Sama_0714 at 878.732 kb on + strand, within Sama_0714 at 878.732 kb on + strand, within Sama_0714 at 878.732 kb on + strand, within Sama_0714 at 878.732 kb on + strand, within Sama_0714 at 878.733 kb on - strand, within Sama_0714 at 878.733 kb on - strand, within Sama_0714 at 878.733 kb on - strand, within Sama_0714 at 878.733 kb on - strand, within Sama_0714 at 878.734 kb on + strand, within Sama_0714 at 878.734 kb on + strand, within Sama_0714 at 878.734 kb on + strand, within Sama_0714 at 878.735 kb on - strand, within Sama_0714 at 878.735 kb on - strand, within Sama_0714 at 878.735 kb on - strand, within Sama_0714 at 878.792 kb on + strand, within Sama_0714 at 878.917 kb on - strand, within Sama_0714 at 878.955 kb on + strand, within Sama_0714 at 878.955 kb on + strand, within Sama_0714 at 878.984 kb on + strand at 878.984 kb on + strand at 878.984 kb on + strand at 878.984 kb on + strand at 878.985 kb on - strand at 878.985 kb on - strand at 878.985 kb on - strand at 878.985 kb on - strand at 878.987 kb on + strand at 878.987 kb on + strand at 878.987 kb on + strand at 878.988 kb on - strand at 879.008 kb on + strand at 879.009 kb on - strand at 879.022 kb on + strand at 879.022 kb on + strand at 879.022 kb on + strand at 879.023 kb on - strand at 879.054 kb on + strand at 879.055 kb on - strand at 879.072 kb on - strand at 879.131 kb on + strand at 879.165 kb on + strand at 879.166 kb on - strand at 879.166 kb on - strand at 879.168 kb on + strand at 879.168 kb on + strand at 879.168 kb on + strand at 879.168 kb on + strand at 879.169 kb on - strand at 879.314 kb on + strand at 879.315 kb on - strand at 879.319 kb on + strand at 879.319 kb on + strand at 879.329 kb on - strand at 879.394 kb on - strand at 879.438 kb on + strand at 879.438 kb on + strand at 879.438 kb on + strand at 879.439 kb on - strand at 879.448 kb on + strand at 879.448 kb on + strand at 879.448 kb on + strand at 879.449 kb on - strand at 879.449 kb on - strand at 879.551 kb on - strand, within Sama_0715 at 879.567 kb on + strand, within Sama_0715 at 879.567 kb on + strand, within Sama_0715 at 879.568 kb on - strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.675 kb on + strand, within Sama_0715 at 879.675 kb on + strand, within Sama_0715 at 879.676 kb on - strand, within Sama_0715 at 879.683 kb on + strand, within Sama_0715 at 879.683 kb on + strand, within Sama_0715 at 879.684 kb on - strand, within Sama_0715 at 879.759 kb on + strand, within Sama_0715 at 879.759 kb on + strand, within Sama_0715 at 879.760 kb on - strand, within Sama_0715 at 879.760 kb on - strand, within Sama_0715 at 879.809 kb on + strand, within Sama_0715 at 879.809 kb on + strand, within Sama_0715 at 879.810 kb on - strand, within Sama_0715 at 879.810 kb on - strand, within Sama_0715 at 879.847 kb on + strand, within Sama_0715 at 879.896 kb on + strand at 879.896 kb on + strand at 879.896 kb on + strand at 879.897 kb on - strand at 879.897 kb on - strand at 879.897 kb on - strand at 879.902 kb on + strand at 879.902 kb on + strand at 879.903 kb on - strand at 879.903 kb on - strand at 879.903 kb on - strand at 879.918 kb on - strand at 879.931 kb on + strand at 879.932 kb on - strand at 879.932 kb on - strand at 879.933 kb on + strand at 879.947 kb on + strand at 879.950 kb on + strand at 880.007 kb on + strand at 880.007 kb on + strand at 880.007 kb on + strand at 880.007 kb on + strand at 880.008 kb on - strand at 880.202 kb on + strand, within Sama_0716 at 880.203 kb on - strand, within Sama_0716 at 880.203 kb on - strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.233 kb on - strand, within Sama_0716 at 880.262 kb on + strand, within Sama_0716 at 880.263 kb on - strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.276 kb on - strand, within Sama_0716 at 880.318 kb on + strand, within Sama_0716 at 880.319 kb on - strand, within Sama_0716 at 880.380 kb on + strand at 880.381 kb on - strand at 880.391 kb on + strand at 880.391 kb on + strand at 880.391 kb on + strand at 880.391 kb on + strand at 880.392 kb on - strand at 880.392 kb on - strand at 880.422 kb on - strand at 880.422 kb on - strand at 880.422 kb on - strand at 880.440 kb on - strand at 880.445 kb on + strand at 880.445 kb on + strand at 880.446 kb on - strand at 880.446 kb on - strand at 880.471 kb on + strand at 880.472 kb on - strand at 880.472 kb on - strand at 880.500 kb on + strand at 880.528 kb on + strand at 880.528 kb on + strand at 880.529 kb on - strand at 880.571 kb on + strand at 880.572 kb on - strand at 880.667 kb on - strand, within Sama_0717 at 880.667 kb on - strand, within Sama_0717 at 880.768 kb on - strand, within Sama_0717 at 880.768 kb on - strand, within Sama_0717
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 878,528 - Sama_0714 0.79 -1.0 878,528 - Sama_0714 0.79 +0.0 878,562 - Sama_0714 0.80 -0.4 878,582 + Sama_0714 0.81 +0.5 878,582 + Sama_0714 0.81 +1.4 878,582 + Sama_0714 0.81 +0.5 878,583 - Sama_0714 0.81 -0.9 878,613 - Sama_0714 0.81 +1.0 878,613 - Sama_0714 0.81 +0.0 878,662 + Sama_0714 0.82 -0.4 878,662 + Sama_0714 0.82 +1.2 878,663 - Sama_0714 0.82 +0.8 878,732 + Sama_0714 0.84 +1.4 878,732 + Sama_0714 0.84 +0.0 878,732 + Sama_0714 0.84 -1.6 878,732 + Sama_0714 0.84 -1.6 878,733 - Sama_0714 0.84 -1.5 878,733 - Sama_0714 0.84 -1.6 878,733 - Sama_0714 0.84 +2.9 878,733 - Sama_0714 0.84 +1.1 878,734 + Sama_0714 0.84 -0.5 878,734 + Sama_0714 0.84 -0.2 878,734 + Sama_0714 0.84 -0.5 878,735 - Sama_0714 0.84 -2.0 878,735 - Sama_0714 0.84 -0.6 878,735 - Sama_0714 0.84 -1.8 878,792 + Sama_0714 0.86 +0.0 878,917 - Sama_0714 0.89 -0.2 878,955 + Sama_0714 0.89 -0.1 878,955 + Sama_0714 0.89 +1.0 878,984 + -1.2 878,984 + +0.1 878,984 + -0.8 878,984 + -0.5 878,985 - -0.1 878,985 - +1.4 878,985 - +1.8 878,985 - -1.2 878,987 + +1.0 878,987 + -1.0 878,987 + -1.5 878,988 - -1.6 879,008 + +0.4 879,009 - -0.2 879,022 + -0.6 879,022 + -0.0 879,022 + +1.0 879,023 - +0.6 879,054 + -0.8 879,055 - -1.2 879,072 - -1.1 879,131 + +1.1 879,165 + +1.0 879,166 - +0.4 879,166 - +0.8 879,168 + -0.5 879,168 + +1.5 879,168 + -0.5 879,168 + -0.4 879,169 - -1.9 879,314 + -0.3 879,315 - -0.7 879,319 + -1.0 879,319 + +1.3 879,329 - -2.2 879,394 - -1.1 879,438 + -0.4 879,438 + -0.4 879,438 + -0.7 879,439 - -0.5 879,448 + +1.4 879,448 + -0.2 879,448 + -1.9 879,449 - -0.5 879,449 - +0.0 879,551 - Sama_0715 0.22 +1.8 879,567 + Sama_0715 0.25 -0.7 879,567 + Sama_0715 0.25 +0.8 879,568 - Sama_0715 0.25 +0.0 879,635 + Sama_0715 0.39 -0.4 879,635 + Sama_0715 0.39 -0.5 879,635 + Sama_0715 0.39 -0.9 879,635 + Sama_0715 0.39 -1.2 879,635 + Sama_0715 0.39 +1.4 879,635 + Sama_0715 0.39 +1.0 879,635 + Sama_0715 0.39 -0.0 879,635 + Sama_0715 0.39 -2.2 879,635 + Sama_0715 0.39 -0.1 879,635 + Sama_0715 0.39 -1.8 879,635 + Sama_0715 0.39 -1.2 879,635 + Sama_0715 0.39 +0.5 879,636 - Sama_0715 0.40 +0.0 879,636 - Sama_0715 0.40 -2.4 879,636 - Sama_0715 0.40 -1.0 879,636 - Sama_0715 0.40 +0.5 879,636 - Sama_0715 0.40 +0.4 879,636 - Sama_0715 0.40 -0.7 879,636 - Sama_0715 0.40 -0.5 879,675 + Sama_0715 0.48 -0.6 879,675 + Sama_0715 0.48 -0.1 879,676 - Sama_0715 0.48 +0.8 879,683 + Sama_0715 0.50 -0.9 879,683 + Sama_0715 0.50 -1.0 879,684 - Sama_0715 0.50 -0.3 879,759 + Sama_0715 0.66 -1.0 879,759 + Sama_0715 0.66 +0.6 879,760 - Sama_0715 0.66 +1.4 879,760 - Sama_0715 0.66 -0.8 879,809 + Sama_0715 0.76 +0.4 879,809 + Sama_0715 0.76 -0.8 879,810 - Sama_0715 0.77 +0.4 879,810 - Sama_0715 0.77 -1.0 879,847 + Sama_0715 0.85 -1.2 879,896 + +0.5 879,896 + +1.1 879,896 + -0.6 879,897 - -0.6 879,897 - +0.4 879,897 - +0.4 879,902 + -0.1 879,902 + -0.0 879,903 - +0.3 879,903 - +0.8 879,903 - -0.5 879,918 - -1.1 879,931 + -1.1 879,932 - +0.0 879,932 - +1.8 879,933 + -0.2 879,947 + +0.4 879,950 + -0.0 880,007 + +0.2 880,007 + -1.5 880,007 + -2.2 880,007 + -0.5 880,008 - +1.9 880,202 + Sama_0716 0.51 -0.2 880,203 - Sama_0716 0.51 -0.8 880,203 - Sama_0716 0.51 -0.1 880,232 + Sama_0716 0.59 -0.4 880,232 + Sama_0716 0.59 -0.6 880,232 + Sama_0716 0.59 -0.6 880,232 + Sama_0716 0.59 -0.3 880,233 - Sama_0716 0.59 +0.0 880,262 + Sama_0716 0.66 +0.4 880,263 - Sama_0716 0.66 -0.8 880,275 + Sama_0716 0.69 +0.0 880,275 + Sama_0716 0.69 +0.4 880,275 + Sama_0716 0.69 +0.2 880,275 + Sama_0716 0.69 -1.1 880,276 - Sama_0716 0.69 -0.5 880,318 + Sama_0716 0.80 -0.1 880,319 - Sama_0716 0.80 +0.2 880,380 + -0.9 880,381 - -0.7 880,391 + -1.1 880,391 + -0.8 880,391 + +0.6 880,391 + -0.0 880,392 - -0.5 880,392 - -1.1 880,422 - -0.4 880,422 - +0.2 880,422 - +0.5 880,440 - -0.2 880,445 + +0.4 880,445 + -1.6 880,446 - +1.0 880,446 - -0.2 880,471 + +0.3 880,472 - -0.0 880,472 - +0.2 880,500 + -0.7 880,528 + -1.9 880,528 + +0.0 880,529 - -1.2 880,571 + +0.3 880,572 - +0.8 880,667 - Sama_0717 0.10 -0.4 880,667 - Sama_0717 0.10 -0.3 880,768 - Sama_0717 0.16 +0.8 880,768 - Sama_0717 0.16 -1.7
Or see this region's nucleotide sequence