Strain Fitness in Marinobacter adhaerens HP15 around HP15_3821

Experiment: m.b. copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3820 and HP15_3821 are separated by 162 nucleotidesHP15_3821 and HP15_3822 are separated by 3 nucleotides HP15_3820: HP15_3820 - major facilitator superfamily MFS_1, at 4,046,125 to 4,047,408 _3820 HP15_3821: HP15_3821 - transcriptional regulator, MarR family, at 4,047,571 to 4,047,996 _3821 HP15_3822: HP15_3822 - drug resistance transporter, EmrB/QacA family, at 4,048,000 to 4,049,391 _3822 Position (kb) 4047 4048Strain fitness (log2 ratio) -2 -1 0 1 2at 4046.670 kb on + strand, within HP15_3820at 4046.688 kb on - strand, within HP15_3820at 4046.748 kb on + strand, within HP15_3820at 4046.803 kb on - strand, within HP15_3820at 4046.803 kb on - strand, within HP15_3820at 4046.816 kb on + strand, within HP15_3820at 4046.922 kb on + strand, within HP15_3820at 4046.960 kb on + strand, within HP15_3820at 4046.960 kb on + strand, within HP15_3820at 4046.991 kb on + strand, within HP15_3820at 4046.999 kb on - strand, within HP15_3820at 4047.001 kb on + strand, within HP15_3820at 4047.015 kb on + strand, within HP15_3820at 4047.024 kb on + strand, within HP15_3820at 4047.119 kb on - strand, within HP15_3820at 4047.119 kb on - strand, within HP15_3820at 4047.165 kb on + strand, within HP15_3820at 4047.259 kb on - strand, within HP15_3820at 4047.285 kb on - strandat 4047.383 kb on + strandat 4047.715 kb on - strand, within HP15_3821at 4047.715 kb on - strand, within HP15_3821at 4047.774 kb on - strand, within HP15_3821at 4047.776 kb on + strand, within HP15_3821at 4047.776 kb on + strand, within HP15_3821at 4047.784 kb on - strand, within HP15_3821at 4047.896 kb on - strand, within HP15_3821at 4047.934 kb on - strand, within HP15_3821at 4047.975 kb on - strandat 4048.055 kb on + strandat 4048.073 kb on - strandat 4048.093 kb on + strandat 4048.106 kb on + strandat 4048.216 kb on - strand, within HP15_3822at 4048.241 kb on + strand, within HP15_3822at 4048.242 kb on + strand, within HP15_3822at 4048.280 kb on + strand, within HP15_3822at 4048.337 kb on - strand, within HP15_3822at 4048.377 kb on + strand, within HP15_3822at 4048.385 kb on - strand, within HP15_3822at 4048.431 kb on + strand, within HP15_3822at 4048.439 kb on - strand, within HP15_3822at 4048.460 kb on + strand, within HP15_3822at 4048.604 kb on - strand, within HP15_3822at 4048.639 kb on - strand, within HP15_3822at 4048.672 kb on + strand, within HP15_3822at 4048.672 kb on + strand, within HP15_3822at 4048.699 kb on + strand, within HP15_3822at 4048.748 kb on - strand, within HP15_3822at 4048.796 kb on + strand, within HP15_3822at 4048.866 kb on + strand, within HP15_3822at 4048.874 kb on - strand, within HP15_3822at 4048.874 kb on - strand, within HP15_3822at 4048.875 kb on + strand, within HP15_3822at 4048.914 kb on - strand, within HP15_3822at 4048.914 kb on - strand, within HP15_3822at 4048.919 kb on - strand, within HP15_3822at 4048.923 kb on + strand, within HP15_3822

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 1 mM
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4,046,670 + HP15_3820 0.42 +0.8
4,046,688 - HP15_3820 0.44 +0.0
4,046,748 + HP15_3820 0.49 -0.8
4,046,803 - HP15_3820 0.53 +0.4
4,046,803 - HP15_3820 0.53 -0.1
4,046,816 + HP15_3820 0.54 +0.0
4,046,922 + HP15_3820 0.62 +1.3
4,046,960 + HP15_3820 0.65 -0.8
4,046,960 + HP15_3820 0.65 -0.4
4,046,991 + HP15_3820 0.67 +0.1
4,046,999 - HP15_3820 0.68 -0.4
4,047,001 + HP15_3820 0.68 -0.4
4,047,015 + HP15_3820 0.69 +0.4
4,047,024 + HP15_3820 0.70 +0.5
4,047,119 - HP15_3820 0.77 +0.2
4,047,119 - HP15_3820 0.77 +0.1
4,047,165 + HP15_3820 0.81 +1.8
4,047,259 - HP15_3820 0.88 -0.6
4,047,285 - -0.1
4,047,383 + +1.0
4,047,715 - HP15_3821 0.34 +0.6
4,047,715 - HP15_3821 0.34 -1.5
4,047,774 - HP15_3821 0.48 -0.7
4,047,776 + HP15_3821 0.48 +0.1
4,047,776 + HP15_3821 0.48 -0.5
4,047,784 - HP15_3821 0.50 -2.0
4,047,896 - HP15_3821 0.76 -0.7
4,047,934 - HP15_3821 0.85 -0.9
4,047,975 - -0.2
4,048,055 + -0.9
4,048,073 - +0.7
4,048,093 + +0.3
4,048,106 + +0.2
4,048,216 - HP15_3822 0.16 +0.1
4,048,241 + HP15_3822 0.17 -0.1
4,048,242 + HP15_3822 0.17 +0.5
4,048,280 + HP15_3822 0.20 +1.4
4,048,337 - HP15_3822 0.24 -0.1
4,048,377 + HP15_3822 0.27 -0.5
4,048,385 - HP15_3822 0.28 -0.4
4,048,431 + HP15_3822 0.31 +0.7
4,048,439 - HP15_3822 0.32 +0.2
4,048,460 + HP15_3822 0.33 +1.9
4,048,604 - HP15_3822 0.43 +0.3
4,048,639 - HP15_3822 0.46 -1.7
4,048,672 + HP15_3822 0.48 -2.1
4,048,672 + HP15_3822 0.48 +0.9
4,048,699 + HP15_3822 0.50 -0.5
4,048,748 - HP15_3822 0.54 +0.2
4,048,796 + HP15_3822 0.57 +0.6
4,048,866 + HP15_3822 0.62 +0.1
4,048,874 - HP15_3822 0.63 +0.6
4,048,874 - HP15_3822 0.63 -0.3
4,048,875 + HP15_3822 0.63 -0.3
4,048,914 - HP15_3822 0.66 +0.0
4,048,914 - HP15_3822 0.66 -0.7
4,048,919 - HP15_3822 0.66 +0.2
4,048,923 + HP15_3822 0.66 +0.2

Or see this region's nucleotide sequence