Experiment: m.b. copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_tRNA48 and HP15_3017 are separated by 809 nucleotides HP15_3017 and HP15_3018 are separated by 102 nucleotides HP15_3018 and HP15_3019 are separated by 249 nucleotides
HP15_tRNA48: HP15_tRNA48 - tRNA-Phe, at 3,161,615 to 3,161,690
_tRNA48
HP15_3017: HP15_3017 - molybdenum-pterin-binding protein, at 3,162,500 to 3,162,928
_3017
HP15_3018: HP15_3018 - protein containing UspA domain, at 3,163,031 to 3,163,402
_3018
HP15_3019: HP15_3019 - Na+/Ca+ antiporter, CaCA family, at 3,163,652 to 3,164,623
_3019
Position (kb)
3162
3163 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3161.511 kb on - strand at 3161.753 kb on - strand at 3161.797 kb on - strand at 3161.899 kb on + strand at 3161.982 kb on + strand at 3162.086 kb on - strand at 3162.236 kb on - strand at 3162.236 kb on - strand at 3162.247 kb on + strand at 3162.416 kb on - strand at 3162.565 kb on + strand, within HP15_3017 at 3162.586 kb on + strand, within HP15_3017 at 3162.594 kb on - strand, within HP15_3017 at 3162.635 kb on - strand, within HP15_3017 at 3162.673 kb on + strand, within HP15_3017 at 3162.673 kb on + strand, within HP15_3017 at 3162.673 kb on + strand, within HP15_3017 at 3162.673 kb on + strand, within HP15_3017 at 3162.681 kb on - strand, within HP15_3017 at 3162.759 kb on - strand, within HP15_3017 at 3162.903 kb on + strand at 3163.055 kb on - strand at 3163.423 kb on + strand at 3163.506 kb on + strand at 3163.587 kb on - strand at 3163.713 kb on - strand at 3163.805 kb on - strand, within HP15_3019 at 3163.835 kb on - strand, within HP15_3019 at 3163.865 kb on + strand, within HP15_3019 at 3163.878 kb on - strand, within HP15_3019
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 1 mM remove 3,161,511 - +2.4 3,161,753 - +0.1 3,161,797 - +1.1 3,161,899 + -1.0 3,161,982 + -0.0 3,162,086 - -1.0 3,162,236 - -0.3 3,162,236 - -0.4 3,162,247 + +3.0 3,162,416 - -0.4 3,162,565 + HP15_3017 0.15 +1.0 3,162,586 + HP15_3017 0.20 -0.7 3,162,594 - HP15_3017 0.22 +0.2 3,162,635 - HP15_3017 0.31 +0.7 3,162,673 + HP15_3017 0.40 +0.5 3,162,673 + HP15_3017 0.40 -0.7 3,162,673 + HP15_3017 0.40 +0.9 3,162,673 + HP15_3017 0.40 +1.0 3,162,681 - HP15_3017 0.42 +0.6 3,162,759 - HP15_3017 0.60 +0.2 3,162,903 + -0.7 3,163,055 - -0.5 3,163,423 + +0.9 3,163,506 + -0.7 3,163,587 - -0.7 3,163,713 - -0.1 3,163,805 - HP15_3019 0.16 +0.3 3,163,835 - HP15_3019 0.19 -1.2 3,163,865 + HP15_3019 0.22 +0.9 3,163,878 - HP15_3019 0.23 +0.7
Or see this region's nucleotide sequence