Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09210 and PGA1_c09220 are separated by 392 nucleotides PGA1_c09220 and PGA1_c09230 are separated by 238 nucleotides PGA1_c09230 and PGA1_c09240 overlap by 4 nucleotides
PGA1_c09210: PGA1_c09210 - hypothetical protein, at 945,240 to 945,803
_c09210
PGA1_c09220: PGA1_c09220 - Predicted CoA-binding protein, at 946,196 to 946,666
_c09220
PGA1_c09230: PGA1_c09230 - phosphoribosyl-ATP pyrophosphatase HisE, at 946,905 to 947,222
_c09230
PGA1_c09240: PGA1_c09240 - imidazole glycerol phosphate synthase subunit HisF, at 947,219 to 947,980
_c09240
Position (kb) 946
947 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.221 kb on - strand at 945.292 kb on + strand at 945.298 kb on - strand, within PGA1_c09210 at 945.310 kb on - strand, within PGA1_c09210 at 945.320 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.347 kb on + strand, within PGA1_c09210 at 945.347 kb on - strand, within PGA1_c09210 at 945.347 kb on - strand, within PGA1_c09210 at 945.354 kb on - strand, within PGA1_c09210 at 945.368 kb on - strand, within PGA1_c09210 at 945.549 kb on - strand, within PGA1_c09210 at 945.649 kb on - strand, within PGA1_c09210 at 945.649 kb on - strand, within PGA1_c09210 at 945.701 kb on - strand, within PGA1_c09210 at 945.844 kb on - strand at 945.864 kb on + strand at 945.876 kb on + strand at 945.884 kb on - strand at 946.013 kb on - strand at 946.022 kb on + strand at 946.030 kb on - strand at 946.085 kb on - strand at 946.124 kb on + strand at 946.204 kb on - strand at 946.266 kb on - strand, within PGA1_c09220 at 946.269 kb on + strand, within PGA1_c09220 at 946.329 kb on - strand, within PGA1_c09220 at 946.371 kb on - strand, within PGA1_c09220 at 946.382 kb on + strand, within PGA1_c09220 at 946.451 kb on - strand, within PGA1_c09220 at 946.483 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.528 kb on + strand, within PGA1_c09220 at 946.546 kb on + strand, within PGA1_c09220 at 946.567 kb on - strand, within PGA1_c09220 at 946.616 kb on + strand, within PGA1_c09220 at 946.878 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 945,221 - +0.1 945,292 + -0.8 945,298 - PGA1_c09210 0.10 +0.0 945,310 - PGA1_c09210 0.12 +0.0 945,320 + PGA1_c09210 0.14 +1.0 945,339 + PGA1_c09210 0.18 -0.4 945,339 + PGA1_c09210 0.18 -1.6 945,339 + PGA1_c09210 0.18 +1.0 945,347 + PGA1_c09210 0.19 +0.4 945,347 - PGA1_c09210 0.19 -0.8 945,347 - PGA1_c09210 0.19 +0.7 945,354 - PGA1_c09210 0.20 +1.0 945,368 - PGA1_c09210 0.23 -0.6 945,549 - PGA1_c09210 0.55 +1.4 945,649 - PGA1_c09210 0.73 -0.4 945,649 - PGA1_c09210 0.73 -0.2 945,701 - PGA1_c09210 0.82 -1.9 945,844 - +2.5 945,864 + -2.1 945,876 + -0.6 945,884 - -1.3 946,013 - -1.6 946,022 + +2.2 946,030 - -0.4 946,085 - +0.4 946,124 + +0.6 946,204 - -0.6 946,266 - PGA1_c09220 0.15 -1.0 946,269 + PGA1_c09220 0.15 -2.6 946,329 - PGA1_c09220 0.28 -2.4 946,371 - PGA1_c09220 0.37 -0.5 946,382 + PGA1_c09220 0.39 -0.1 946,451 - PGA1_c09220 0.54 +0.4 946,483 + PGA1_c09220 0.61 +0.5 946,518 + PGA1_c09220 0.68 -0.1 946,518 + PGA1_c09220 0.68 +0.2 946,518 + PGA1_c09220 0.68 +2.0 946,528 + PGA1_c09220 0.70 -0.1 946,546 + PGA1_c09220 0.74 -1.6 946,567 - PGA1_c09220 0.79 -0.6 946,616 + PGA1_c09220 0.89 -0.7 946,878 + +0.8
Or see this region's nucleotide sequence