Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00750 and PGA1_c00760 are separated by 36 nucleotides PGA1_c00760 and PGA1_c00770 are separated by 158 nucleotides PGA1_c00770 and PGA1_c00780 are separated by 123 nucleotides
PGA1_c00750: PGA1_c00750 - UDP-N-acetylglucosamine acyltransferase-like protein, at 72,913 to 73,662
_c00750
PGA1_c00760: PGA1_c00760 - putative pyruvate dehydrogenase complex repressor, at 73,699 to 74,469
_c00760
PGA1_c00770: PGA1_c00770 - hypothetical protein, at 74,628 to 74,966
_c00770
PGA1_c00780: PGA1_c00780 - putative chromosome segregation protein SMC, at 75,090 to 78,545
_c00780
Position (kb) 74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 73.658 kb on - strand at 73.674 kb on - strand at 73.703 kb on - strand at 73.710 kb on - strand at 73.712 kb on + strand at 73.740 kb on + strand at 73.782 kb on + strand, within PGA1_c00760 at 73.782 kb on + strand, within PGA1_c00760 at 73.790 kb on - strand, within PGA1_c00760 at 73.790 kb on - strand, within PGA1_c00760 at 73.800 kb on - strand, within PGA1_c00760 at 73.800 kb on - strand, within PGA1_c00760 at 73.801 kb on + strand, within PGA1_c00760 at 73.864 kb on + strand, within PGA1_c00760 at 73.864 kb on + strand, within PGA1_c00760 at 73.864 kb on + strand, within PGA1_c00760 at 73.939 kb on - strand, within PGA1_c00760 at 74.037 kb on + strand, within PGA1_c00760 at 74.045 kb on - strand, within PGA1_c00760 at 74.045 kb on - strand, within PGA1_c00760 at 74.045 kb on - strand, within PGA1_c00760 at 74.064 kb on + strand, within PGA1_c00760 at 74.064 kb on + strand, within PGA1_c00760 at 74.231 kb on + strand, within PGA1_c00760 at 74.246 kb on - strand, within PGA1_c00760 at 74.346 kb on + strand, within PGA1_c00760 at 74.363 kb on + strand, within PGA1_c00760 at 74.364 kb on - strand, within PGA1_c00760 at 74.381 kb on + strand, within PGA1_c00760 at 74.381 kb on + strand, within PGA1_c00760 at 74.381 kb on + strand, within PGA1_c00760 at 74.389 kb on - strand, within PGA1_c00760 at 74.400 kb on + strand at 74.424 kb on + strand at 74.424 kb on + strand at 74.432 kb on - strand at 74.432 kb on - strand at 74.437 kb on + strand at 74.448 kb on + strand at 74.473 kb on - strand at 74.473 kb on - strand at 74.504 kb on - strand at 74.525 kb on - strand at 74.525 kb on - strand at 74.535 kb on + strand at 74.536 kb on - strand at 74.536 kb on - strand at 74.536 kb on - strand at 74.573 kb on + strand at 74.586 kb on - strand at 74.619 kb on + strand at 74.619 kb on + strand at 74.619 kb on + strand at 74.622 kb on + strand at 74.622 kb on - strand at 74.627 kb on - strand at 74.628 kb on - strand at 74.628 kb on - strand at 74.628 kb on - strand at 74.629 kb on + strand at 74.647 kb on - strand at 74.660 kb on - strand at 74.696 kb on - strand, within PGA1_c00770 at 74.710 kb on + strand, within PGA1_c00770 at 74.754 kb on + strand, within PGA1_c00770 at 74.754 kb on - strand, within PGA1_c00770 at 74.762 kb on - strand, within PGA1_c00770 at 74.764 kb on - strand, within PGA1_c00770 at 74.775 kb on - strand, within PGA1_c00770 at 74.801 kb on + strand, within PGA1_c00770 at 74.834 kb on + strand, within PGA1_c00770 at 74.892 kb on - strand, within PGA1_c00770 at 74.892 kb on - strand, within PGA1_c00770 at 74.901 kb on + strand, within PGA1_c00770 at 74.901 kb on + strand, within PGA1_c00770 at 74.909 kb on - strand, within PGA1_c00770 at 74.909 kb on - strand, within PGA1_c00770 at 74.948 kb on + strand at 75.001 kb on - strand at 75.012 kb on + strand at 75.200 kb on + strand at 75.224 kb on - strand at 75.307 kb on - strand at 75.333 kb on - strand at 75.404 kb on - strand at 75.445 kb on + strand, within PGA1_c00780 at 75.445 kb on + strand, within PGA1_c00780 at 75.513 kb on + strand, within PGA1_c00780 at 75.822 kb on - strand, within PGA1_c00780 at 75.829 kb on - strand, within PGA1_c00780 at 75.847 kb on - strand, within PGA1_c00780 at 75.878 kb on - strand, within PGA1_c00780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 73,658 - +1.1 73,674 - -1.0 73,703 - +1.3 73,710 - -1.2 73,712 + -0.8 73,740 + -0.2 73,782 + PGA1_c00760 0.11 +0.3 73,782 + PGA1_c00760 0.11 -1.8 73,790 - PGA1_c00760 0.12 -0.2 73,790 - PGA1_c00760 0.12 -1.2 73,800 - PGA1_c00760 0.13 -0.5 73,800 - PGA1_c00760 0.13 +1.5 73,801 + PGA1_c00760 0.13 +0.5 73,864 + PGA1_c00760 0.21 -0.5 73,864 + PGA1_c00760 0.21 +1.4 73,864 + PGA1_c00760 0.21 -0.1 73,939 - PGA1_c00760 0.31 +0.3 74,037 + PGA1_c00760 0.44 -2.3 74,045 - PGA1_c00760 0.45 -0.8 74,045 - PGA1_c00760 0.45 +0.5 74,045 - PGA1_c00760 0.45 +0.9 74,064 + PGA1_c00760 0.47 +0.9 74,064 + PGA1_c00760 0.47 -2.6 74,231 + PGA1_c00760 0.69 +0.2 74,246 - PGA1_c00760 0.71 +1.1 74,346 + PGA1_c00760 0.84 +1.1 74,363 + PGA1_c00760 0.86 -2.8 74,364 - PGA1_c00760 0.86 +1.3 74,381 + PGA1_c00760 0.88 +1.1 74,381 + PGA1_c00760 0.88 -1.2 74,381 + PGA1_c00760 0.88 +0.2 74,389 - PGA1_c00760 0.89 +0.4 74,400 + +0.5 74,424 + +2.7 74,424 + -2.2 74,432 - +1.2 74,432 - -2.7 74,437 + -0.9 74,448 + -1.7 74,473 - +1.0 74,473 - -0.1 74,504 - +0.3 74,525 - -0.3 74,525 - +0.2 74,535 + +0.4 74,536 - +1.3 74,536 - -2.7 74,536 - +1.2 74,573 + -3.3 74,586 - +0.4 74,619 + +0.6 74,619 + +2.1 74,619 + +0.5 74,622 + +0.5 74,622 - +0.7 74,627 - -0.5 74,628 - +0.7 74,628 - -1.2 74,628 - +0.3 74,629 + -2.6 74,647 - -0.3 74,660 - +0.8 74,696 - PGA1_c00770 0.20 -1.9 74,710 + PGA1_c00770 0.24 -0.6 74,754 + PGA1_c00770 0.37 +0.5 74,754 - PGA1_c00770 0.37 -0.5 74,762 - PGA1_c00770 0.40 +0.0 74,764 - PGA1_c00770 0.40 +0.3 74,775 - PGA1_c00770 0.43 -2.2 74,801 + PGA1_c00770 0.51 +0.4 74,834 + PGA1_c00770 0.61 +0.5 74,892 - PGA1_c00770 0.78 +0.2 74,892 - PGA1_c00770 0.78 -2.0 74,901 + PGA1_c00770 0.81 -0.9 74,901 + PGA1_c00770 0.81 -0.5 74,909 - PGA1_c00770 0.83 +1.4 74,909 - PGA1_c00770 0.83 -1.4 74,948 + +0.7 75,001 - +0.5 75,012 + +1.1 75,200 + -1.6 75,224 - -1.2 75,307 - +0.8 75,333 - +0.1 75,404 - -1.4 75,445 + PGA1_c00780 0.10 +1.1 75,445 + PGA1_c00780 0.10 -2.1 75,513 + PGA1_c00780 0.12 -2.1 75,822 - PGA1_c00780 0.21 -1.3 75,829 - PGA1_c00780 0.21 +0.3 75,847 - PGA1_c00780 0.22 -1.6 75,878 - PGA1_c00780 0.23 +0.1
Or see this region's nucleotide sequence