Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06230 and PGA1_c06240 are separated by 319 nucleotides PGA1_c06240 and PGA1_c06250 are separated by 199 nucleotides
PGA1_c06230: PGA1_c06230 - putative protein Smf, at 637,888 to 639,126
_c06230
PGA1_c06240: PGA1_c06240 - protein TldD, at 639,446 to 640,867
_c06240
PGA1_c06250: PGA1_c06250 - cytochrome c oxidase subunit 2, at 641,067 to 641,906
_c06250
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 638.492 kb on + strand, within PGA1_c06230 at 638.492 kb on + strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.531 kb on - strand, within PGA1_c06230 at 638.569 kb on - strand, within PGA1_c06230 at 638.569 kb on - strand, within PGA1_c06230 at 638.592 kb on + strand, within PGA1_c06230 at 638.652 kb on + strand, within PGA1_c06230 at 638.675 kb on + strand, within PGA1_c06230 at 638.677 kb on - strand, within PGA1_c06230 at 638.772 kb on - strand, within PGA1_c06230 at 638.785 kb on - strand, within PGA1_c06230 at 638.930 kb on + strand, within PGA1_c06230 at 638.954 kb on + strand, within PGA1_c06230 at 638.962 kb on - strand, within PGA1_c06230 at 638.977 kb on + strand, within PGA1_c06230 at 639.032 kb on + strand at 639.088 kb on - strand at 639.089 kb on + strand at 639.090 kb on - strand at 639.095 kb on - strand at 639.097 kb on - strand at 639.116 kb on - strand at 639.130 kb on - strand at 639.155 kb on + strand at 639.158 kb on - strand at 639.160 kb on + strand at 639.163 kb on + strand at 639.168 kb on - strand at 639.171 kb on + strand at 639.277 kb on + strand at 639.301 kb on + strand at 639.431 kb on - strand at 639.443 kb on + strand at 639.443 kb on + strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.451 kb on - strand at 639.479 kb on + strand at 639.515 kb on + strand at 639.516 kb on + strand at 639.516 kb on + strand at 639.551 kb on + strand at 639.624 kb on + strand, within PGA1_c06240 at 639.632 kb on - strand, within PGA1_c06240 at 639.632 kb on - strand, within PGA1_c06240 at 639.672 kb on + strand, within PGA1_c06240 at 639.732 kb on + strand, within PGA1_c06240 at 639.753 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.790 kb on + strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.798 kb on - strand, within PGA1_c06240 at 639.811 kb on - strand, within PGA1_c06240 at 639.868 kb on - strand, within PGA1_c06240 at 639.918 kb on + strand, within PGA1_c06240 at 640.038 kb on + strand, within PGA1_c06240 at 640.090 kb on + strand, within PGA1_c06240 at 640.258 kb on - strand, within PGA1_c06240 at 640.258 kb on - strand, within PGA1_c06240 at 640.258 kb on - strand, within PGA1_c06240 at 640.262 kb on - strand, within PGA1_c06240 at 640.572 kb on + strand, within PGA1_c06240 at 640.643 kb on + strand, within PGA1_c06240 at 640.650 kb on - strand, within PGA1_c06240 at 640.749 kb on - strand at 640.816 kb on - strand at 640.821 kb on + strand at 640.860 kb on - strand at 640.868 kb on + strand at 640.916 kb on + strand at 641.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 638,492 + PGA1_c06230 0.49 +0.1 638,492 + PGA1_c06230 0.49 -0.3 638,531 - PGA1_c06230 0.52 -1.0 638,531 - PGA1_c06230 0.52 -0.9 638,531 - PGA1_c06230 0.52 +1.1 638,531 - PGA1_c06230 0.52 +1.4 638,569 - PGA1_c06230 0.55 +0.4 638,569 - PGA1_c06230 0.55 +0.2 638,592 + PGA1_c06230 0.57 -0.0 638,652 + PGA1_c06230 0.62 -0.2 638,675 + PGA1_c06230 0.64 +1.6 638,677 - PGA1_c06230 0.64 +1.0 638,772 - PGA1_c06230 0.71 +1.4 638,785 - PGA1_c06230 0.72 -2.5 638,930 + PGA1_c06230 0.84 +2.9 638,954 + PGA1_c06230 0.86 -0.1 638,962 - PGA1_c06230 0.87 +0.4 638,977 + PGA1_c06230 0.88 -0.2 639,032 + +0.1 639,088 - -2.3 639,089 + -0.1 639,090 - +1.0 639,095 - -0.0 639,097 - +0.3 639,116 - +0.3 639,130 - +2.2 639,155 + -2.3 639,158 - +0.5 639,160 + -0.6 639,163 + -0.4 639,168 - +1.7 639,171 + -0.8 639,277 + -0.8 639,301 + +2.0 639,431 - +1.2 639,443 + +0.8 639,443 + -2.2 639,451 - +0.6 639,451 - -0.6 639,451 - -1.4 639,451 - +0.5 639,451 - +2.5 639,479 + -1.0 639,515 + -0.6 639,516 + -1.6 639,516 + -1.6 639,551 + +2.0 639,624 + PGA1_c06240 0.13 -2.7 639,632 - PGA1_c06240 0.13 -0.5 639,632 - PGA1_c06240 0.13 -0.6 639,672 + PGA1_c06240 0.16 -1.2 639,732 + PGA1_c06240 0.20 -1.6 639,753 + PGA1_c06240 0.22 +2.0 639,790 + PGA1_c06240 0.24 +0.7 639,790 + PGA1_c06240 0.24 -1.1 639,790 + PGA1_c06240 0.24 +0.2 639,790 + PGA1_c06240 0.24 -1.8 639,790 + PGA1_c06240 0.24 -0.7 639,798 - PGA1_c06240 0.25 -2.7 639,798 - PGA1_c06240 0.25 +1.0 639,798 - PGA1_c06240 0.25 -1.6 639,798 - PGA1_c06240 0.25 -3.0 639,811 - PGA1_c06240 0.26 +1.0 639,868 - PGA1_c06240 0.30 +1.0 639,918 + PGA1_c06240 0.33 -3.2 640,038 + PGA1_c06240 0.42 -1.0 640,090 + PGA1_c06240 0.45 -0.4 640,258 - PGA1_c06240 0.57 -1.2 640,258 - PGA1_c06240 0.57 -3.4 640,258 - PGA1_c06240 0.57 -0.6 640,262 - PGA1_c06240 0.57 -2.8 640,572 + PGA1_c06240 0.79 +0.5 640,643 + PGA1_c06240 0.84 +1.2 640,650 - PGA1_c06240 0.85 +0.3 640,749 - +1.7 640,816 - -1.6 640,821 + +1.0 640,860 - +1.3 640,868 + -2.0 640,916 + -0.4 641,061 - +1.4
Or see this region's nucleotide sequence