Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06110 and PGA1_c06120 are separated by 29 nucleotides PGA1_c06120 and PGA1_c06130 are separated by 200 nucleotides PGA1_c06130 and PGA1_c06140 are separated by 19 nucleotides
PGA1_c06110: PGA1_c06110 - Flp pilus assembly protein, ATPase CpaF, at 624,826 to 626,271
_c06110
PGA1_c06120: PGA1_c06120 - Flp pilus assembly protein, ATPase CpaE, at 626,301 to 627,533
_c06120
PGA1_c06130: PGA1_c06130 - outer membrane protein OmpA-like protein, at 627,734 to 628,360
_c06130
PGA1_c06140: PGA1_c06140 - putative bacterial type II/III secretion system protein, at 628,380 to 629,834
_c06140
Position (kb) 626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 625.482 kb on - strand, within PGA1_c06110 at 625.511 kb on - strand, within PGA1_c06110 at 625.559 kb on - strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.586 kb on + strand, within PGA1_c06110 at 625.597 kb on - strand, within PGA1_c06110 at 625.783 kb on + strand, within PGA1_c06110 at 625.795 kb on + strand, within PGA1_c06110 at 625.830 kb on + strand, within PGA1_c06110 at 625.851 kb on - strand, within PGA1_c06110 at 625.878 kb on + strand, within PGA1_c06110 at 625.937 kb on - strand, within PGA1_c06110 at 625.941 kb on + strand, within PGA1_c06110 at 626.016 kb on - strand, within PGA1_c06110 at 626.157 kb on - strand at 626.157 kb on - strand at 626.259 kb on + strand at 626.327 kb on - strand at 626.341 kb on + strand at 626.418 kb on + strand at 626.419 kb on - strand at 626.499 kb on + strand, within PGA1_c06120 at 626.499 kb on + strand, within PGA1_c06120 at 626.507 kb on - strand, within PGA1_c06120 at 626.507 kb on - strand, within PGA1_c06120 at 626.507 kb on - strand, within PGA1_c06120 at 626.535 kb on + strand, within PGA1_c06120 at 626.538 kb on - strand, within PGA1_c06120 at 626.538 kb on - strand, within PGA1_c06120 at 626.570 kb on - strand, within PGA1_c06120 at 626.595 kb on - strand, within PGA1_c06120 at 626.687 kb on - strand, within PGA1_c06120 at 626.687 kb on - strand, within PGA1_c06120 at 626.725 kb on + strand, within PGA1_c06120 at 626.742 kb on - strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.819 kb on + strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.969 kb on - strand, within PGA1_c06120 at 627.050 kb on - strand, within PGA1_c06120 at 627.115 kb on - strand, within PGA1_c06120 at 627.117 kb on + strand, within PGA1_c06120 at 627.178 kb on + strand, within PGA1_c06120 at 627.216 kb on + strand, within PGA1_c06120 at 627.234 kb on + strand, within PGA1_c06120 at 627.239 kb on + strand, within PGA1_c06120 at 627.242 kb on - strand, within PGA1_c06120 at 627.338 kb on - strand, within PGA1_c06120 at 627.420 kb on - strand at 627.455 kb on + strand at 627.463 kb on - strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.478 kb on - strand at 627.504 kb on + strand at 627.536 kb on + strand at 627.544 kb on - strand at 627.551 kb on - strand at 627.567 kb on - strand at 627.590 kb on + strand at 627.625 kb on - strand at 627.663 kb on - strand at 627.689 kb on - strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.694 kb on - strand at 627.701 kb on + strand at 627.701 kb on + strand at 627.709 kb on - strand at 627.720 kb on - strand at 627.722 kb on + strand at 627.777 kb on + strand at 627.785 kb on - strand at 627.811 kb on + strand, within PGA1_c06130 at 627.982 kb on - strand, within PGA1_c06130 at 627.992 kb on + strand, within PGA1_c06130 at 628.000 kb on - strand, within PGA1_c06130 at 628.013 kb on + strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.157 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.323 kb on + strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.333 kb on + strand at 628.413 kb on + strand at 628.476 kb on - strand at 628.508 kb on - strand at 628.518 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 625,482 - PGA1_c06110 0.45 -1.8 625,511 - PGA1_c06110 0.47 -0.6 625,559 - PGA1_c06110 0.51 -1.6 625,576 + PGA1_c06110 0.52 -0.0 625,576 + PGA1_c06110 0.52 -0.0 625,586 + PGA1_c06110 0.53 +2.0 625,597 - PGA1_c06110 0.53 +1.0 625,783 + PGA1_c06110 0.66 -1.0 625,795 + PGA1_c06110 0.67 +1.0 625,830 + PGA1_c06110 0.69 +1.0 625,851 - PGA1_c06110 0.71 -0.0 625,878 + PGA1_c06110 0.73 -0.3 625,937 - PGA1_c06110 0.77 -0.6 625,941 + PGA1_c06110 0.77 +1.0 626,016 - PGA1_c06110 0.82 -0.6 626,157 - -0.0 626,157 - -0.9 626,259 + +0.5 626,327 - +1.0 626,341 + +1.0 626,418 + -0.0 626,419 - -0.6 626,499 + PGA1_c06120 0.16 -0.0 626,499 + PGA1_c06120 0.16 -0.3 626,507 - PGA1_c06120 0.17 +2.6 626,507 - PGA1_c06120 0.17 +1.0 626,507 - PGA1_c06120 0.17 +2.0 626,535 + PGA1_c06120 0.19 -2.0 626,538 - PGA1_c06120 0.19 +1.0 626,538 - PGA1_c06120 0.19 +4.2 626,570 - PGA1_c06120 0.22 -0.0 626,595 - PGA1_c06120 0.24 +2.0 626,687 - PGA1_c06120 0.31 +1.0 626,687 - PGA1_c06120 0.31 +1.0 626,725 + PGA1_c06120 0.34 +1.0 626,742 - PGA1_c06120 0.36 +2.0 626,800 + PGA1_c06120 0.40 -0.2 626,800 + PGA1_c06120 0.40 -0.0 626,819 + PGA1_c06120 0.42 -1.0 626,917 - PGA1_c06120 0.50 -0.6 626,917 - PGA1_c06120 0.50 +1.0 626,919 + PGA1_c06120 0.50 +0.7 626,919 + PGA1_c06120 0.50 -0.6 626,969 - PGA1_c06120 0.54 -0.6 627,050 - PGA1_c06120 0.61 +2.0 627,115 - PGA1_c06120 0.66 +1.0 627,117 + PGA1_c06120 0.66 +0.3 627,178 + PGA1_c06120 0.71 +0.3 627,216 + PGA1_c06120 0.74 +1.0 627,234 + PGA1_c06120 0.76 +0.3 627,239 + PGA1_c06120 0.76 -0.0 627,242 - PGA1_c06120 0.76 -0.0 627,338 - PGA1_c06120 0.84 +1.6 627,420 - -2.0 627,455 + +0.7 627,463 - +0.8 627,470 + -0.0 627,470 + -0.9 627,470 + -1.6 627,478 - +1.3 627,504 + -1.6 627,536 + +2.2 627,544 - -0.6 627,551 - +1.0 627,567 - +0.3 627,590 + +1.0 627,625 - +1.6 627,663 - -2.5 627,689 - -0.2 627,691 + +2.7 627,691 + +2.8 627,691 + +2.0 627,694 - +1.4 627,701 + +0.4 627,701 + +3.3 627,709 - +2.0 627,720 - +2.6 627,722 + +1.0 627,777 + -0.0 627,785 - +1.0 627,811 + PGA1_c06130 0.12 -3.0 627,982 - PGA1_c06130 0.40 +0.6 627,992 + PGA1_c06130 0.41 +1.6 628,000 - PGA1_c06130 0.42 -1.3 628,013 + PGA1_c06130 0.44 +0.3 628,136 - PGA1_c06130 0.64 -0.6 628,136 - PGA1_c06130 0.64 +0.6 628,157 + PGA1_c06130 0.67 -0.0 628,268 + PGA1_c06130 0.85 +0.1 628,268 + PGA1_c06130 0.85 -0.3 628,291 - PGA1_c06130 0.89 +0.4 628,291 - PGA1_c06130 0.89 -1.3 628,323 + +1.0 628,331 - -0.0 628,331 - -0.0 628,331 - +2.0 628,333 + +1.0 628,413 + +0.2 628,476 - -1.3 628,508 - +2.2 628,518 + +1.0
Or see this region's nucleotide sequence