Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05870 and PGA1_c05880 are separated by 309 nucleotides PGA1_c05880 and PGA1_c05890 are separated by 25 nucleotides PGA1_c05890 and PGA1_c05900 are separated by 114 nucleotides
PGA1_c05870: PGA1_c05870 - holliday junction ATP-dependent DNA helicase RuvB, at 600,592 to 601,641
_c05870
PGA1_c05880: PGA1_c05880 - hypothetical protein, at 601,951 to 602,619
_c05880
PGA1_c05890: PGA1_c05890 - thioesterase domain-containing protein, at 602,645 to 603,031
_c05890
PGA1_c05900: PGA1_c05900 - protein TolQ, at 603,146 to 603,841
_c05900
Position (kb) 601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 601.124 kb on - strand, within PGA1_c05870 at 601.351 kb on - strand, within PGA1_c05870 at 601.378 kb on + strand, within PGA1_c05870 at 601.461 kb on - strand, within PGA1_c05870 at 601.593 kb on - strand at 601.595 kb on + strand at 601.595 kb on + strand at 601.603 kb on - strand at 601.603 kb on - strand at 601.686 kb on + strand at 601.723 kb on + strand at 601.770 kb on - strand at 601.770 kb on - strand at 601.780 kb on + strand at 601.780 kb on - strand at 601.803 kb on - strand at 601.877 kb on + strand at 601.910 kb on + strand at 601.910 kb on + strand at 601.918 kb on - strand at 601.986 kb on - strand at 602.118 kb on + strand, within PGA1_c05880 at 602.158 kb on - strand, within PGA1_c05880 at 602.177 kb on + strand, within PGA1_c05880 at 602.195 kb on - strand, within PGA1_c05880 at 602.276 kb on - strand, within PGA1_c05880 at 602.338 kb on + strand, within PGA1_c05880 at 602.383 kb on + strand, within PGA1_c05880 at 602.383 kb on + strand, within PGA1_c05880 at 602.405 kb on - strand, within PGA1_c05880 at 602.500 kb on + strand, within PGA1_c05880 at 602.548 kb on - strand, within PGA1_c05880 at 602.613 kb on + strand at 602.627 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.648 kb on + strand at 602.682 kb on + strand at 602.737 kb on + strand, within PGA1_c05890 at 602.753 kb on - strand, within PGA1_c05890 at 602.779 kb on - strand, within PGA1_c05890 at 602.795 kb on + strand, within PGA1_c05890 at 602.799 kb on - strand, within PGA1_c05890 at 602.800 kb on + strand, within PGA1_c05890 at 602.800 kb on + strand, within PGA1_c05890 at 602.827 kb on + strand, within PGA1_c05890 at 602.843 kb on + strand, within PGA1_c05890 at 602.879 kb on - strand, within PGA1_c05890 at 602.887 kb on + strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 603.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 601,124 - PGA1_c05870 0.51 -1.6 601,351 - PGA1_c05870 0.72 -0.4 601,378 + PGA1_c05870 0.75 +0.0 601,461 - PGA1_c05870 0.83 -1.8 601,593 - -1.3 601,595 + +0.4 601,595 + -1.0 601,603 - +0.0 601,603 - +0.0 601,686 + -1.0 601,723 + -0.6 601,770 - -1.3 601,770 - -0.1 601,780 + -1.6 601,780 - -0.7 601,803 - +1.8 601,877 + -2.0 601,910 + +0.6 601,910 + +0.4 601,918 - +1.0 601,986 - +0.5 602,118 + PGA1_c05880 0.25 +2.0 602,158 - PGA1_c05880 0.31 -0.6 602,177 + PGA1_c05880 0.34 -0.3 602,195 - PGA1_c05880 0.36 +0.3 602,276 - PGA1_c05880 0.49 -0.4 602,338 + PGA1_c05880 0.58 +1.3 602,383 + PGA1_c05880 0.65 +1.0 602,383 + PGA1_c05880 0.65 +0.0 602,405 - PGA1_c05880 0.68 +1.5 602,500 + PGA1_c05880 0.82 -0.7 602,548 - PGA1_c05880 0.89 -2.8 602,613 + -0.4 602,627 + -1.8 602,634 + -0.7 602,634 + -2.0 602,634 + +2.0 602,634 + +1.4 602,634 + -0.6 602,648 + -1.8 602,682 + -1.0 602,737 + PGA1_c05890 0.24 -0.7 602,753 - PGA1_c05890 0.28 -0.2 602,779 - PGA1_c05890 0.35 +0.4 602,795 + PGA1_c05890 0.39 -0.5 602,799 - PGA1_c05890 0.40 -2.8 602,800 + PGA1_c05890 0.40 -1.3 602,800 + PGA1_c05890 0.40 -0.5 602,827 + PGA1_c05890 0.47 -0.6 602,843 + PGA1_c05890 0.51 -0.6 602,879 - PGA1_c05890 0.60 -1.8 602,887 + PGA1_c05890 0.63 +1.0 602,895 - PGA1_c05890 0.65 -1.9 602,895 - PGA1_c05890 0.65 +0.7 602,895 - PGA1_c05890 0.65 -1.0 602,900 - PGA1_c05890 0.66 -2.0 602,900 - PGA1_c05890 0.66 +0.0 602,900 - PGA1_c05890 0.66 -1.6 603,086 - +1.0
Or see this region's nucleotide sequence