Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05800

Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05790 and PGA1_c05800 are separated by 132 nucleotidesPGA1_c05800 and PGA1_c05810 are separated by 130 nucleotides PGA1_c05790: PGA1_c05790 - primosomal protein N, at 592,337 to 594,532 _c05790 PGA1_c05800: PGA1_c05800 - YeeE/YedE family (DUF395)., at 594,665 to 595,729 _c05800 PGA1_c05810: PGA1_c05810 - putative transporter protein, MFS family, at 595,860 to 597,095 _c05810 Position (kb) 594 595 596Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 594.603 kb on + strandat 594.611 kb on - strandat 594.681 kb on + strandat 594.712 kb on + strandat 594.717 kb on + strandat 594.809 kb on - strand, within PGA1_c05800at 594.811 kb on + strand, within PGA1_c05800at 594.842 kb on + strand, within PGA1_c05800at 594.919 kb on - strand, within PGA1_c05800at 594.926 kb on + strand, within PGA1_c05800at 595.016 kb on - strand, within PGA1_c05800at 595.021 kb on - strand, within PGA1_c05800at 595.093 kb on + strand, within PGA1_c05800at 595.221 kb on + strand, within PGA1_c05800at 595.246 kb on + strand, within PGA1_c05800at 595.246 kb on + strand, within PGA1_c05800at 595.246 kb on + strand, within PGA1_c05800at 595.254 kb on - strand, within PGA1_c05800at 595.254 kb on - strand, within PGA1_c05800at 595.254 kb on - strand, within PGA1_c05800at 595.365 kb on - strand, within PGA1_c05800at 595.398 kb on + strand, within PGA1_c05800at 595.400 kb on - strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.532 kb on - strand, within PGA1_c05800at 595.691 kb on - strandat 595.693 kb on + strandat 595.693 kb on + strandat 595.701 kb on - strandat 595.711 kb on - strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.805 kb on - strandat 595.805 kb on - strandat 595.805 kb on - strandat 595.805 kb on - strandat 595.838 kb on - strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.870 kb on - strandat 595.913 kb on + strandat 595.938 kb on + strandat 595.938 kb on + strandat 595.938 kb on + strandat 595.938 kb on + strandat 595.945 kb on - strandat 595.946 kb on - strandat 595.964 kb on - strandat 595.966 kb on + strandat 596.032 kb on - strand, within PGA1_c05810at 596.033 kb on + strand, within PGA1_c05810at 596.036 kb on + strand, within PGA1_c05810at 596.036 kb on - strand, within PGA1_c05810at 596.041 kb on - strand, within PGA1_c05810at 596.051 kb on - strand, within PGA1_c05810at 596.081 kb on - strand, within PGA1_c05810at 596.087 kb on + strand, within PGA1_c05810at 596.116 kb on - strand, within PGA1_c05810at 596.128 kb on - strand, within PGA1_c05810at 596.173 kb on + strand, within PGA1_c05810at 596.186 kb on + strand, within PGA1_c05810at 596.191 kb on + strand, within PGA1_c05810at 596.194 kb on - strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.209 kb on - strand, within PGA1_c05810at 596.278 kb on - strand, within PGA1_c05810at 596.299 kb on - strand, within PGA1_c05810at 596.336 kb on - strand, within PGA1_c05810at 596.359 kb on - strand, within PGA1_c05810at 596.359 kb on - strand, within PGA1_c05810at 596.369 kb on - strand, within PGA1_c05810at 596.473 kb on + strand, within PGA1_c05810at 596.507 kb on + strand, within PGA1_c05810at 596.507 kb on + strand, within PGA1_c05810at 596.517 kb on + strand, within PGA1_c05810at 596.565 kb on + strand, within PGA1_c05810at 596.565 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.627 kb on - strand, within PGA1_c05810at 596.714 kb on + strand, within PGA1_c05810at 596.719 kb on + strand, within PGA1_c05810at 596.724 kb on + strand, within PGA1_c05810at 596.727 kb on - strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml
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594,603 + -2.6
594,611 - +0.7
594,681 + +0.4
594,712 + +1.0
594,717 + -1.0
594,809 - PGA1_c05800 0.14 -0.8
594,811 + PGA1_c05800 0.14 -1.8
594,842 + PGA1_c05800 0.17 +0.5
594,919 - PGA1_c05800 0.24 +0.6
594,926 + PGA1_c05800 0.25 +0.1
595,016 - PGA1_c05800 0.33 +0.3
595,021 - PGA1_c05800 0.33 -1.0
595,093 + PGA1_c05800 0.40 -0.1
595,221 + PGA1_c05800 0.52 -0.3
595,246 + PGA1_c05800 0.55 +3.0
595,246 + PGA1_c05800 0.55 -0.8
595,246 + PGA1_c05800 0.55 -2.2
595,254 - PGA1_c05800 0.55 +0.5
595,254 - PGA1_c05800 0.55 +0.4
595,254 - PGA1_c05800 0.55 +0.5
595,365 - PGA1_c05800 0.66 -2.4
595,398 + PGA1_c05800 0.69 -0.7
595,400 - PGA1_c05800 0.69 +1.7
595,524 + PGA1_c05800 0.81 -1.2
595,524 + PGA1_c05800 0.81 -1.6
595,524 + PGA1_c05800 0.81 -0.6
595,524 + PGA1_c05800 0.81 -0.6
595,532 - PGA1_c05800 0.81 +0.1
595,691 - +1.3
595,693 + +2.0
595,693 + +0.3
595,701 - -1.1
595,711 - -0.5
595,797 + -1.3
595,797 + +0.7
595,797 + -0.3
595,797 + -1.8
595,797 + +0.1
595,797 + +0.1
595,805 - +2.0
595,805 - +1.3
595,805 - +0.6
595,805 - -1.9
595,838 - +0.7
595,862 + -0.1
595,862 + -0.1
595,870 - +0.0
595,913 + -0.6
595,938 + -1.2
595,938 + +0.0
595,938 + +1.6
595,938 + +1.8
595,945 - +0.5
595,946 - -1.2
595,964 - -1.7
595,966 + +1.0
596,032 - PGA1_c05810 0.14 -2.0
596,033 + PGA1_c05810 0.14 +0.6
596,036 + PGA1_c05810 0.14 +1.6
596,036 - PGA1_c05810 0.14 -0.2
596,041 - PGA1_c05810 0.15 +1.5
596,051 - PGA1_c05810 0.15 +0.0
596,081 - PGA1_c05810 0.18 +1.5
596,087 + PGA1_c05810 0.18 +0.2
596,116 - PGA1_c05810 0.21 +0.0
596,128 - PGA1_c05810 0.22 +1.0
596,173 + PGA1_c05810 0.25 +2.6
596,186 + PGA1_c05810 0.26 -0.4
596,191 + PGA1_c05810 0.27 -0.6
596,194 - PGA1_c05810 0.27 -0.4
596,201 + PGA1_c05810 0.28 +0.2
596,201 + PGA1_c05810 0.28 +1.0
596,201 + PGA1_c05810 0.28 -0.3
596,201 + PGA1_c05810 0.28 +0.5
596,201 + PGA1_c05810 0.28 +1.2
596,209 - PGA1_c05810 0.28 -2.4
596,278 - PGA1_c05810 0.34 +1.4
596,299 - PGA1_c05810 0.36 +0.0
596,336 - PGA1_c05810 0.39 +0.3
596,359 - PGA1_c05810 0.40 +1.2
596,359 - PGA1_c05810 0.40 +0.0
596,369 - PGA1_c05810 0.41 -1.8
596,473 + PGA1_c05810 0.50 -0.1
596,507 + PGA1_c05810 0.52 -0.4
596,507 + PGA1_c05810 0.52 +0.2
596,517 + PGA1_c05810 0.53 +1.4
596,565 + PGA1_c05810 0.57 -0.9
596,565 + PGA1_c05810 0.57 +0.4
596,614 + PGA1_c05810 0.61 +0.8
596,614 + PGA1_c05810 0.61 +2.2
596,614 + PGA1_c05810 0.61 -0.6
596,614 + PGA1_c05810 0.61 -0.6
596,622 - PGA1_c05810 0.62 -0.4
596,622 - PGA1_c05810 0.62 +1.0
596,622 - PGA1_c05810 0.62 +0.3
596,622 - PGA1_c05810 0.62 +0.5
596,622 - PGA1_c05810 0.62 -0.6
596,627 - PGA1_c05810 0.62 +0.2
596,714 + PGA1_c05810 0.69 +2.0
596,719 + PGA1_c05810 0.69 +0.2
596,724 + PGA1_c05810 0.70 +2.0
596,727 - PGA1_c05810 0.70 +0.7
596,729 + PGA1_c05810 0.70 -0.7
596,729 + PGA1_c05810 0.70 +0.7
596,729 + PGA1_c05810 0.70 -2.9

Or see this region's nucleotide sequence