Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00530 and PGA1_c00540 are separated by 5 nucleotides PGA1_c00540 and PGA1_c00550 are separated by 150 nucleotides PGA1_c00550 and PGA1_c00570 are separated by 4 nucleotides PGA1_c00570 and PGA1_c00590 are separated by 41 nucleotides PGA1_c00590 and PGA1_c00600 are separated by 57 nucleotides
PGA1_c00530: PGA1_c00530 - Phosphotransferase enzyme family., at 56,962 to 57,990
_c00530
PGA1_c00540: PGA1_c00540 - putative 16S rRNA-processing protein RimM, at 57,996 to 58,499
_c00540
PGA1_c00550: PGA1_c00550 - putative cob(II)yrinic acid a,c-diamide reductase, at 58,650 to 59,291
_c00550
PGA1_c00570: PGA1_c00570 - 30S ribosomal protein S16, at 59,296 to 59,655
_c00570
PGA1_c00590: PGA1_c00590 - chorismate mutase, at 59,697 to 60,005
_c00590
PGA1_c00600: PGA1_c00600 - putative acetyltransferase, at 60,063 to 60,665
_c00600
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 57.664 kb on - strand, within PGA1_c00530 at 57.737 kb on + strand, within PGA1_c00530 at 57.737 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.806 kb on + strand, within PGA1_c00530 at 57.816 kb on + strand, within PGA1_c00530 at 57.816 kb on + strand, within PGA1_c00530 at 57.824 kb on - strand, within PGA1_c00530 at 57.824 kb on - strand, within PGA1_c00530 at 57.885 kb on + strand, within PGA1_c00530 at 57.887 kb on + strand, within PGA1_c00530 at 57.887 kb on + strand, within PGA1_c00530 at 57.890 kb on - strand at 57.892 kb on + strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.900 kb on - strand at 57.979 kb on + strand at 57.987 kb on - strand at 57.994 kb on + strand at 58.002 kb on - strand at 58.002 kb on - strand at 58.510 kb on - strand at 58.520 kb on - strand at 58.528 kb on - strand at 58.530 kb on - strand at 58.543 kb on - strand at 58.556 kb on + strand at 58.564 kb on - strand at 58.591 kb on - strand at 58.633 kb on + strand at 58.640 kb on + strand at 58.643 kb on - strand at 58.682 kb on + strand at 58.690 kb on - strand at 58.830 kb on + strand, within PGA1_c00550 at 58.832 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.850 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.880 kb on + strand, within PGA1_c00550 at 58.908 kb on + strand, within PGA1_c00550 at 59.000 kb on + strand, within PGA1_c00550 at 59.010 kb on + strand, within PGA1_c00550 at 59.159 kb on + strand, within PGA1_c00550 at 59.190 kb on - strand, within PGA1_c00550 at 60.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 57,664 - PGA1_c00530 0.68 -3.1 57,737 + PGA1_c00530 0.75 +0.2 57,737 - PGA1_c00530 0.75 +0.2 57,745 - PGA1_c00530 0.76 -0.6 57,745 - PGA1_c00530 0.76 -0.8 57,745 - PGA1_c00530 0.76 -0.1 57,806 + PGA1_c00530 0.82 -0.1 57,816 + PGA1_c00530 0.83 +0.9 57,816 + PGA1_c00530 0.83 +0.9 57,824 - PGA1_c00530 0.84 -0.2 57,824 - PGA1_c00530 0.84 +0.1 57,885 + PGA1_c00530 0.90 -1.5 57,887 + PGA1_c00530 0.90 +0.5 57,887 + PGA1_c00530 0.90 -1.9 57,890 - +1.9 57,892 + -1.7 57,895 - -3.3 57,895 - -0.7 57,895 - +0.1 57,895 - -0.8 57,895 - -2.4 57,895 - +0.6 57,895 - +1.4 57,900 - -0.3 57,979 + -0.3 57,987 - -2.7 57,994 + +0.5 58,002 - +1.7 58,002 - -0.0 58,510 - +0.3 58,520 - +0.6 58,528 - +0.3 58,530 - -0.5 58,543 - -0.3 58,556 + +0.5 58,564 - +0.4 58,591 - +0.1 58,633 + +0.5 58,640 + +1.0 58,643 - -0.8 58,682 + +1.7 58,690 - +0.2 58,830 + PGA1_c00550 0.28 +0.3 58,832 - PGA1_c00550 0.28 +0.2 58,837 - PGA1_c00550 0.29 -1.1 58,837 - PGA1_c00550 0.29 +1.1 58,850 + PGA1_c00550 0.31 +1.3 58,855 + PGA1_c00550 0.32 +0.3 58,855 + PGA1_c00550 0.32 -2.2 58,855 + PGA1_c00550 0.32 +1.1 58,863 - PGA1_c00550 0.33 +0.7 58,863 - PGA1_c00550 0.33 +1.0 58,863 - PGA1_c00550 0.33 +1.1 58,880 + PGA1_c00550 0.36 +1.1 58,908 + PGA1_c00550 0.40 -1.6 59,000 + PGA1_c00550 0.55 +0.8 59,010 + PGA1_c00550 0.56 +1.4 59,159 + PGA1_c00550 0.79 +0.7 59,190 - PGA1_c00550 0.84 +0.2 60,055 - +1.1
Or see this region's nucleotide sequence