Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00490

Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00480 and PGA1_c00490 overlap by 14 nucleotidesPGA1_c00490 and PGA1_c00500 are separated by 219 nucleotidesPGA1_c00500 and PGA1_c00510 are separated by 11 nucleotides PGA1_c00480: PGA1_c00480 - CAAX prenyl protease-related protein, at 52,543 to 54,171 _c00480 PGA1_c00490: PGA1_c00490 - ATPases involved in chromosome partitioning, at 54,158 to 54,967 _c00490 PGA1_c00500: PGA1_c00500 - 50S ribosomal protein L31, at 55,187 to 55,408 _c00500 PGA1_c00510: PGA1_c00510 - 50S ribosomal protein L19, at 55,420 to 55,791 _c00510 Position (kb) 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 53.206 kb on + strand, within PGA1_c00480at 53.239 kb on + strand, within PGA1_c00480at 53.263 kb on + strand, within PGA1_c00480at 53.273 kb on + strand, within PGA1_c00480at 53.282 kb on + strand, within PGA1_c00480at 53.329 kb on + strand, within PGA1_c00480at 53.334 kb on + strand, within PGA1_c00480at 53.342 kb on - strand, within PGA1_c00480at 53.349 kb on - strand, within PGA1_c00480at 53.362 kb on + strand, within PGA1_c00480at 53.375 kb on - strand, within PGA1_c00480at 53.424 kb on + strand, within PGA1_c00480at 53.457 kb on - strand, within PGA1_c00480at 53.520 kb on + strand, within PGA1_c00480at 53.520 kb on + strand, within PGA1_c00480at 53.545 kb on + strand, within PGA1_c00480at 53.568 kb on + strand, within PGA1_c00480at 53.633 kb on + strand, within PGA1_c00480at 53.633 kb on + strand, within PGA1_c00480at 53.633 kb on + strand, within PGA1_c00480at 53.633 kb on + strand, within PGA1_c00480at 53.633 kb on + strand, within PGA1_c00480at 53.636 kb on - strand, within PGA1_c00480at 53.641 kb on - strand, within PGA1_c00480at 53.641 kb on - strand, within PGA1_c00480at 53.641 kb on - strand, within PGA1_c00480at 53.641 kb on - strand, within PGA1_c00480at 53.641 kb on - strand, within PGA1_c00480at 53.641 kb on - strand, within PGA1_c00480at 53.663 kb on - strand, within PGA1_c00480at 53.669 kb on - strand, within PGA1_c00480at 53.673 kb on + strand, within PGA1_c00480at 53.673 kb on + strand, within PGA1_c00480at 53.681 kb on - strand, within PGA1_c00480at 53.694 kb on - strand, within PGA1_c00480at 53.812 kb on - strand, within PGA1_c00480at 53.864 kb on + strand, within PGA1_c00480at 53.882 kb on - strand, within PGA1_c00480at 53.886 kb on + strand, within PGA1_c00480at 53.957 kb on - strand, within PGA1_c00480at 53.975 kb on + strand, within PGA1_c00480at 53.993 kb on + strand, within PGA1_c00480at 53.998 kb on + strand, within PGA1_c00480at 53.998 kb on + strand, within PGA1_c00480at 53.998 kb on + strand, within PGA1_c00480at 53.998 kb on + strand, within PGA1_c00480at 53.998 kb on + strand, within PGA1_c00480at 54.006 kb on - strand, within PGA1_c00480at 54.006 kb on - strand, within PGA1_c00480at 54.006 kb on - strand, within PGA1_c00480at 54.006 kb on - strand, within PGA1_c00480at 54.042 kb on + strandat 54.145 kb on + strandat 54.151 kb on + strandat 54.211 kb on + strandat 54.211 kb on + strandat 54.220 kb on - strandat 54.237 kb on + strandat 54.285 kb on - strand, within PGA1_c00490at 54.296 kb on - strand, within PGA1_c00490at 54.361 kb on + strand, within PGA1_c00490at 54.480 kb on + strand, within PGA1_c00490at 54.652 kb on - strand, within PGA1_c00490at 54.724 kb on + strand, within PGA1_c00490at 54.724 kb on + strand, within PGA1_c00490at 54.732 kb on - strand, within PGA1_c00490at 54.776 kb on - strand, within PGA1_c00490at 54.779 kb on + strand, within PGA1_c00490at 54.855 kb on - strand, within PGA1_c00490at 54.913 kb on + strandat 54.984 kb on - strandat 54.986 kb on - strandat 54.986 kb on - strandat 54.995 kb on + strandat 55.077 kb on - strandat 55.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml
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53,206 + PGA1_c00480 0.41 +1.5
53,239 + PGA1_c00480 0.43 -1.2
53,263 + PGA1_c00480 0.44 +0.9
53,273 + PGA1_c00480 0.45 +0.0
53,282 + PGA1_c00480 0.45 -0.2
53,329 + PGA1_c00480 0.48 +0.0
53,334 + PGA1_c00480 0.49 -1.5
53,342 - PGA1_c00480 0.49 -0.8
53,349 - PGA1_c00480 0.49 +0.8
53,362 + PGA1_c00480 0.50 -2.7
53,375 - PGA1_c00480 0.51 +0.4
53,424 + PGA1_c00480 0.54 +1.4
53,457 - PGA1_c00480 0.56 +0.3
53,520 + PGA1_c00480 0.60 +0.4
53,520 + PGA1_c00480 0.60 -1.7
53,545 + PGA1_c00480 0.62 -0.2
53,568 + PGA1_c00480 0.63 +2.0
53,633 + PGA1_c00480 0.67 +1.2
53,633 + PGA1_c00480 0.67 -2.2
53,633 + PGA1_c00480 0.67 +0.1
53,633 + PGA1_c00480 0.67 -0.3
53,633 + PGA1_c00480 0.67 -0.3
53,636 - PGA1_c00480 0.67 -0.9
53,641 - PGA1_c00480 0.67 +0.2
53,641 - PGA1_c00480 0.67 -0.1
53,641 - PGA1_c00480 0.67 +0.6
53,641 - PGA1_c00480 0.67 -2.3
53,641 - PGA1_c00480 0.67 -0.2
53,641 - PGA1_c00480 0.67 +0.1
53,663 - PGA1_c00480 0.69 +0.6
53,669 - PGA1_c00480 0.69 -0.1
53,673 + PGA1_c00480 0.69 -2.7
53,673 + PGA1_c00480 0.69 -0.2
53,681 - PGA1_c00480 0.70 -1.9
53,694 - PGA1_c00480 0.71 +0.2
53,812 - PGA1_c00480 0.78 +0.5
53,864 + PGA1_c00480 0.81 +0.2
53,882 - PGA1_c00480 0.82 -2.8
53,886 + PGA1_c00480 0.82 +0.3
53,957 - PGA1_c00480 0.87 -1.6
53,975 + PGA1_c00480 0.88 +0.5
53,993 + PGA1_c00480 0.89 +1.8
53,998 + PGA1_c00480 0.89 -0.0
53,998 + PGA1_c00480 0.89 -0.8
53,998 + PGA1_c00480 0.89 +0.1
53,998 + PGA1_c00480 0.89 -1.2
53,998 + PGA1_c00480 0.89 +0.0
54,006 - PGA1_c00480 0.90 -1.5
54,006 - PGA1_c00480 0.90 +0.5
54,006 - PGA1_c00480 0.90 -0.7
54,006 - PGA1_c00480 0.90 -0.6
54,042 + +1.7
54,145 + +1.0
54,151 + -0.1
54,211 + +0.3
54,211 + -2.1
54,220 - -2.4
54,237 + -0.9
54,285 - PGA1_c00490 0.16 -3.2
54,296 - PGA1_c00490 0.17 -3.5
54,361 + PGA1_c00490 0.25 -1.5
54,480 + PGA1_c00490 0.40 -1.7
54,652 - PGA1_c00490 0.61 -1.5
54,724 + PGA1_c00490 0.70 -2.2
54,724 + PGA1_c00490 0.70 -0.5
54,732 - PGA1_c00490 0.71 +0.1
54,776 - PGA1_c00490 0.76 -3.1
54,779 + PGA1_c00490 0.77 -0.9
54,855 - PGA1_c00490 0.86 -2.1
54,913 + -1.2
54,984 - -1.1
54,986 - -1.4
54,986 - -0.1
54,995 + -0.2
55,077 - -0.4
55,087 - -1.1

Or see this region's nucleotide sequence