Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04720 and PGA1_c04730 are separated by 11 nucleotides PGA1_c04730 and PGA1_c04740 are separated by 153 nucleotides PGA1_c04740 and PGA1_c04750 are separated by 123 nucleotides PGA1_c04750 and PGA1_c04760 are separated by 5 nucleotides
PGA1_c04720: PGA1_c04720 - outer membrane protein OmpA-domain containing protein, at 464,609 to 465,160
_c04720
PGA1_c04730: PGA1_c04730 - hypothetical protein, at 465,172 to 465,474
_c04730
PGA1_c04740: PGA1_c04740 - phoH-like protein, at 465,628 to 466,635
_c04740
PGA1_c04750: PGA1_c04750 - metalloprotein, YbeY/UPF0054 family, at 466,759 to 467,289
_c04750
PGA1_c04760: PGA1_c04760 - magnesium and cobalt efflux protein corC-like protein, at 467,295 to 468,194
_c04760
Position (kb) 465
466
467 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.638 kb on - strand at 464.638 kb on - strand at 464.638 kb on - strand at 464.666 kb on - strand, within PGA1_c04720 at 464.666 kb on - strand, within PGA1_c04720 at 464.688 kb on + strand, within PGA1_c04720 at 464.696 kb on - strand, within PGA1_c04720 at 464.717 kb on - strand, within PGA1_c04720 at 464.730 kb on - strand, within PGA1_c04720 at 464.730 kb on - strand, within PGA1_c04720 at 464.757 kb on - strand, within PGA1_c04720 at 464.778 kb on + strand, within PGA1_c04720 at 464.833 kb on + strand, within PGA1_c04720 at 464.841 kb on + strand, within PGA1_c04720 at 464.868 kb on - strand, within PGA1_c04720 at 464.897 kb on + strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.976 kb on + strand, within PGA1_c04720 at 464.984 kb on - strand, within PGA1_c04720 at 465.025 kb on + strand, within PGA1_c04720 at 465.057 kb on + strand, within PGA1_c04720 at 465.065 kb on - strand, within PGA1_c04720 at 465.070 kb on + strand, within PGA1_c04720 at 465.078 kb on - strand, within PGA1_c04720 at 465.130 kb on - strand at 465.154 kb on + strand at 465.162 kb on - strand at 465.162 kb on - strand at 465.164 kb on + strand at 465.195 kb on + strand at 465.201 kb on - strand at 465.267 kb on + strand, within PGA1_c04730 at 465.282 kb on - strand, within PGA1_c04730 at 465.287 kb on - strand, within PGA1_c04730 at 465.350 kb on + strand, within PGA1_c04730 at 465.401 kb on + strand, within PGA1_c04730 at 465.455 kb on + strand at 465.473 kb on + strand at 465.481 kb on - strand at 465.481 kb on - strand at 465.481 kb on - strand at 465.481 kb on - strand at 465.483 kb on + strand at 465.491 kb on - strand at 465.517 kb on + strand at 465.574 kb on - strand at 465.574 kb on - strand at 465.676 kb on - strand at 465.853 kb on + strand, within PGA1_c04740 at 465.872 kb on - strand, within PGA1_c04740 at 465.881 kb on + strand, within PGA1_c04740 at 465.889 kb on - strand, within PGA1_c04740 at 465.928 kb on - strand, within PGA1_c04740 at 465.941 kb on - strand, within PGA1_c04740 at 465.960 kb on + strand, within PGA1_c04740 at 465.984 kb on - strand, within PGA1_c04740 at 466.008 kb on + strand, within PGA1_c04740 at 466.080 kb on + strand, within PGA1_c04740 at 466.094 kb on + strand, within PGA1_c04740 at 466.151 kb on + strand, within PGA1_c04740 at 466.174 kb on + strand, within PGA1_c04740 at 466.253 kb on - strand, within PGA1_c04740 at 466.311 kb on + strand, within PGA1_c04740 at 466.343 kb on + strand, within PGA1_c04740 at 466.343 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.353 kb on + strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.361 kb on - strand, within PGA1_c04740 at 466.371 kb on + strand, within PGA1_c04740 at 466.436 kb on - strand, within PGA1_c04740 at 466.457 kb on - strand, within PGA1_c04740 at 466.469 kb on + strand, within PGA1_c04740 at 466.493 kb on + strand, within PGA1_c04740 at 466.501 kb on - strand, within PGA1_c04740 at 466.521 kb on + strand, within PGA1_c04740 at 466.578 kb on + strand at 466.665 kb on + strand at 466.673 kb on - strand at 466.721 kb on - strand at 467.244 kb on + strand at 467.260 kb on - strand at 467.350 kb on - strand at 467.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 464,630 + -0.3 464,630 + +1.9 464,630 + -2.1 464,630 + +0.9 464,638 - +2.1 464,638 - -2.2 464,638 - -0.7 464,666 - PGA1_c04720 0.10 -0.0 464,666 - PGA1_c04720 0.10 +0.4 464,688 + PGA1_c04720 0.14 +0.4 464,696 - PGA1_c04720 0.16 -2.1 464,717 - PGA1_c04720 0.20 +0.3 464,730 - PGA1_c04720 0.22 -0.7 464,730 - PGA1_c04720 0.22 +0.7 464,757 - PGA1_c04720 0.27 +0.8 464,778 + PGA1_c04720 0.31 +1.4 464,833 + PGA1_c04720 0.41 -1.1 464,841 + PGA1_c04720 0.42 +0.1 464,868 - PGA1_c04720 0.47 +0.2 464,897 + PGA1_c04720 0.52 +0.5 464,905 - PGA1_c04720 0.54 -0.5 464,905 - PGA1_c04720 0.54 +1.1 464,905 - PGA1_c04720 0.54 -0.7 464,905 - PGA1_c04720 0.54 -2.5 464,905 - PGA1_c04720 0.54 -1.0 464,976 + PGA1_c04720 0.66 +1.5 464,984 - PGA1_c04720 0.68 +0.7 465,025 + PGA1_c04720 0.75 +0.3 465,057 + PGA1_c04720 0.81 -0.3 465,065 - PGA1_c04720 0.83 +0.4 465,070 + PGA1_c04720 0.84 -0.4 465,078 - PGA1_c04720 0.85 +1.4 465,130 - +0.9 465,154 + -0.3 465,162 - +0.9 465,162 - +1.9 465,164 + +1.9 465,195 + -0.4 465,201 - -0.2 465,267 + PGA1_c04730 0.31 -0.6 465,282 - PGA1_c04730 0.36 +1.4 465,287 - PGA1_c04730 0.38 +0.9 465,350 + PGA1_c04730 0.59 +1.6 465,401 + PGA1_c04730 0.76 -2.2 465,455 + +0.1 465,473 + +0.5 465,481 - +0.3 465,481 - -1.6 465,481 - -0.8 465,481 - -0.7 465,483 + -0.8 465,491 - -0.5 465,517 + +1.6 465,574 - -0.1 465,574 - -0.3 465,676 - +0.2 465,853 + PGA1_c04740 0.22 -0.0 465,872 - PGA1_c04740 0.24 -0.1 465,881 + PGA1_c04740 0.25 -0.4 465,889 - PGA1_c04740 0.26 +0.7 465,928 - PGA1_c04740 0.30 -0.8 465,941 - PGA1_c04740 0.31 -0.8 465,960 + PGA1_c04740 0.33 -0.3 465,984 - PGA1_c04740 0.35 -1.3 466,008 + PGA1_c04740 0.38 +0.4 466,080 + PGA1_c04740 0.45 +0.5 466,094 + PGA1_c04740 0.46 -2.3 466,151 + PGA1_c04740 0.52 -1.7 466,174 + PGA1_c04740 0.54 +0.0 466,253 - PGA1_c04740 0.62 -0.4 466,311 + PGA1_c04740 0.68 +1.5 466,343 + PGA1_c04740 0.71 +1.1 466,343 + PGA1_c04740 0.71 -0.3 466,353 + PGA1_c04740 0.72 -1.7 466,353 + PGA1_c04740 0.72 -1.6 466,353 + PGA1_c04740 0.72 -0.0 466,353 + PGA1_c04740 0.72 -1.9 466,361 - PGA1_c04740 0.73 +0.6 466,361 - PGA1_c04740 0.73 +0.6 466,361 - PGA1_c04740 0.73 -0.3 466,361 - PGA1_c04740 0.73 +0.9 466,371 + PGA1_c04740 0.74 -0.4 466,436 - PGA1_c04740 0.80 +1.3 466,457 - PGA1_c04740 0.82 +1.2 466,469 + PGA1_c04740 0.83 -3.5 466,493 + PGA1_c04740 0.86 -0.4 466,501 - PGA1_c04740 0.87 -0.2 466,521 + PGA1_c04740 0.89 -1.9 466,578 + +0.3 466,665 + -0.7 466,673 - +0.4 466,721 - -0.9 467,244 + -0.4 467,260 - -0.3 467,350 - -0.9 467,368 - -0.2
Or see this region's nucleotide sequence