Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04110

Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04100 and PGA1_c04110 are separated by 278 nucleotidesPGA1_c04110 and PGA1_c04120 are separated by 1 nucleotides PGA1_c04100: PGA1_c04100 - sulfatase, at 395,134 to 396,780 _c04100 PGA1_c04110: PGA1_c04110 - putative fatty acid oxidation complex subunit alpha, at 397,059 to 399,152 _c04110 PGA1_c04120: PGA1_c04120 - 3-ketoacyl-CoA thiolase FadA, at 399,154 to 400,329 _c04120 Position (kb) 397 398 399 400Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 396.064 kb on - strand, within PGA1_c04100at 396.085 kb on + strand, within PGA1_c04100at 396.110 kb on + strand, within PGA1_c04100at 396.110 kb on + strand, within PGA1_c04100at 396.118 kb on - strand, within PGA1_c04100at 396.118 kb on - strand, within PGA1_c04100at 396.298 kb on - strand, within PGA1_c04100at 396.325 kb on - strand, within PGA1_c04100at 396.388 kb on + strand, within PGA1_c04100at 396.388 kb on + strand, within PGA1_c04100at 396.388 kb on + strand, within PGA1_c04100at 396.462 kb on + strand, within PGA1_c04100at 396.550 kb on + strand, within PGA1_c04100at 396.561 kb on + strand, within PGA1_c04100at 396.563 kb on - strand, within PGA1_c04100at 396.563 kb on - strand, within PGA1_c04100at 396.568 kb on - strand, within PGA1_c04100at 396.594 kb on - strand, within PGA1_c04100at 396.600 kb on - strand, within PGA1_c04100at 396.644 kb on - strandat 396.657 kb on - strandat 396.707 kb on + strandat 396.715 kb on - strandat 396.744 kb on + strandat 396.811 kb on - strandat 397.203 kb on + strandat 397.208 kb on + strandat 397.208 kb on + strandat 397.216 kb on - strandat 397.216 kb on - strandat 397.345 kb on + strand, within PGA1_c04110at 397.350 kb on + strand, within PGA1_c04110at 397.353 kb on - strand, within PGA1_c04110at 397.358 kb on - strand, within PGA1_c04110at 397.358 kb on - strand, within PGA1_c04110at 397.362 kb on + strand, within PGA1_c04110at 397.488 kb on + strand, within PGA1_c04110at 397.488 kb on + strand, within PGA1_c04110at 397.500 kb on + strand, within PGA1_c04110at 397.604 kb on + strand, within PGA1_c04110at 397.612 kb on - strand, within PGA1_c04110at 397.613 kb on - strand, within PGA1_c04110at 397.753 kb on - strand, within PGA1_c04110at 397.755 kb on + strand, within PGA1_c04110at 397.755 kb on + strand, within PGA1_c04110at 397.773 kb on + strand, within PGA1_c04110at 397.826 kb on + strand, within PGA1_c04110at 397.848 kb on + strand, within PGA1_c04110at 397.848 kb on + strand, within PGA1_c04110at 397.848 kb on + strand, within PGA1_c04110at 397.856 kb on - strand, within PGA1_c04110at 397.856 kb on - strand, within PGA1_c04110at 397.875 kb on - strand, within PGA1_c04110at 397.892 kb on + strand, within PGA1_c04110at 397.948 kb on - strand, within PGA1_c04110at 397.985 kb on + strand, within PGA1_c04110at 397.993 kb on - strand, within PGA1_c04110at 398.069 kb on - strand, within PGA1_c04110at 398.081 kb on - strand, within PGA1_c04110at 398.084 kb on + strand, within PGA1_c04110at 398.154 kb on + strand, within PGA1_c04110at 398.299 kb on - strand, within PGA1_c04110at 398.520 kb on + strand, within PGA1_c04110at 398.537 kb on - strand, within PGA1_c04110at 398.539 kb on + strand, within PGA1_c04110at 398.597 kb on + strand, within PGA1_c04110at 398.762 kb on + strand, within PGA1_c04110at 398.826 kb on - strand, within PGA1_c04110at 398.836 kb on - strand, within PGA1_c04110at 398.888 kb on + strand, within PGA1_c04110at 398.941 kb on - strand, within PGA1_c04110at 398.981 kb on + strandat 398.981 kb on + strandat 398.981 kb on + strandat 398.981 kb on + strandat 398.981 kb on + strandat 398.981 kb on + strandat 398.981 kb on + strandat 398.981 kb on + strandat 398.981 kb on + strandat 398.981 kb on + strandat 398.989 kb on - strandat 399.009 kb on + strandat 399.066 kb on + strandat 399.092 kb on - strandat 399.121 kb on + strandat 399.121 kb on + strandat 399.121 kb on + strandat 399.129 kb on - strandat 399.129 kb on - strandat 399.142 kb on - strandat 399.233 kb on + strandat 399.276 kb on + strand, within PGA1_c04120at 399.281 kb on + strand, within PGA1_c04120at 399.281 kb on + strand, within PGA1_c04120at 399.281 kb on + strand, within PGA1_c04120at 399.281 kb on + strand, within PGA1_c04120at 399.281 kb on + strand, within PGA1_c04120at 399.281 kb on + strand, within PGA1_c04120at 399.289 kb on - strand, within PGA1_c04120at 399.353 kb on - strand, within PGA1_c04120at 399.440 kb on + strand, within PGA1_c04120at 399.448 kb on - strand, within PGA1_c04120at 399.513 kb on - strand, within PGA1_c04120at 399.520 kb on + strand, within PGA1_c04120at 399.577 kb on - strand, within PGA1_c04120at 399.577 kb on - strand, within PGA1_c04120at 399.650 kb on + strand, within PGA1_c04120at 399.650 kb on + strand, within PGA1_c04120at 399.650 kb on + strand, within PGA1_c04120at 399.650 kb on + strand, within PGA1_c04120at 399.650 kb on + strand, within PGA1_c04120at 399.650 kb on + strand, within PGA1_c04120at 399.650 kb on + strand, within PGA1_c04120at 399.650 kb on + strand, within PGA1_c04120at 399.656 kb on - strand, within PGA1_c04120at 399.658 kb on - strand, within PGA1_c04120at 399.658 kb on - strand, within PGA1_c04120at 399.658 kb on - strand, within PGA1_c04120at 399.658 kb on - strand, within PGA1_c04120at 399.658 kb on - strand, within PGA1_c04120at 399.658 kb on - strand, within PGA1_c04120at 399.766 kb on - strand, within PGA1_c04120at 399.828 kb on - strand, within PGA1_c04120at 399.839 kb on + strand, within PGA1_c04120at 399.894 kb on + strand, within PGA1_c04120at 399.895 kb on + strand, within PGA1_c04120at 399.902 kb on - strand, within PGA1_c04120at 399.916 kb on + strand, within PGA1_c04120at 399.934 kb on + strand, within PGA1_c04120at 399.953 kb on + strand, within PGA1_c04120at 399.961 kb on - strand, within PGA1_c04120at 399.961 kb on - strand, within PGA1_c04120at 399.961 kb on - strand, within PGA1_c04120at 399.961 kb on - strand, within PGA1_c04120at 400.051 kb on + strand, within PGA1_c04120at 400.061 kb on + strand, within PGA1_c04120at 400.093 kb on - strand, within PGA1_c04120at 400.103 kb on - strand, within PGA1_c04120at 400.103 kb on - strand, within PGA1_c04120at 400.104 kb on - strand, within PGA1_c04120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml
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396,064 - PGA1_c04100 0.56 -1.7
396,085 + PGA1_c04100 0.58 -0.5
396,110 + PGA1_c04100 0.59 -2.1
396,110 + PGA1_c04100 0.59 -1.7
396,118 - PGA1_c04100 0.60 -1.2
396,118 - PGA1_c04100 0.60 -0.8
396,298 - PGA1_c04100 0.71 +1.8
396,325 - PGA1_c04100 0.72 +1.5
396,388 + PGA1_c04100 0.76 +0.3
396,388 + PGA1_c04100 0.76 +0.2
396,388 + PGA1_c04100 0.76 -0.7
396,462 + PGA1_c04100 0.81 +0.5
396,550 + PGA1_c04100 0.86 +0.8
396,561 + PGA1_c04100 0.87 -0.3
396,563 - PGA1_c04100 0.87 +0.3
396,563 - PGA1_c04100 0.87 +1.5
396,568 - PGA1_c04100 0.87 -0.5
396,594 - PGA1_c04100 0.89 -0.6
396,600 - PGA1_c04100 0.89 +0.6
396,644 - -0.2
396,657 - +0.2
396,707 + -0.4
396,715 - +0.6
396,744 + -0.1
396,811 - +1.0
397,203 + +0.6
397,208 + +0.3
397,208 + -1.5
397,216 - +1.7
397,216 - +0.9
397,345 + PGA1_c04110 0.14 +1.2
397,350 + PGA1_c04110 0.14 +1.2
397,353 - PGA1_c04110 0.14 +3.7
397,358 - PGA1_c04110 0.14 -1.0
397,358 - PGA1_c04110 0.14 +1.5
397,362 + PGA1_c04110 0.14 +1.8
397,488 + PGA1_c04110 0.20 -0.5
397,488 + PGA1_c04110 0.20 +0.9
397,500 + PGA1_c04110 0.21 -2.5
397,604 + PGA1_c04110 0.26 +0.5
397,612 - PGA1_c04110 0.26 +1.2
397,613 - PGA1_c04110 0.26 +1.3
397,753 - PGA1_c04110 0.33 +0.7
397,755 + PGA1_c04110 0.33 -1.0
397,755 + PGA1_c04110 0.33 +2.0
397,773 + PGA1_c04110 0.34 -0.1
397,826 + PGA1_c04110 0.37 +0.1
397,848 + PGA1_c04110 0.38 +1.0
397,848 + PGA1_c04110 0.38 +0.9
397,848 + PGA1_c04110 0.38 +2.7
397,856 - PGA1_c04110 0.38 -0.2
397,856 - PGA1_c04110 0.38 +1.2
397,875 - PGA1_c04110 0.39 +1.4
397,892 + PGA1_c04110 0.40 +2.9
397,948 - PGA1_c04110 0.42 -2.3
397,985 + PGA1_c04110 0.44 +0.8
397,993 - PGA1_c04110 0.45 +0.6
398,069 - PGA1_c04110 0.48 +2.6
398,081 - PGA1_c04110 0.49 +0.2
398,084 + PGA1_c04110 0.49 +1.9
398,154 + PGA1_c04110 0.52 -0.3
398,299 - PGA1_c04110 0.59 +2.3
398,520 + PGA1_c04110 0.70 +1.7
398,537 - PGA1_c04110 0.71 +1.3
398,539 + PGA1_c04110 0.71 +2.2
398,597 + PGA1_c04110 0.73 +1.0
398,762 + PGA1_c04110 0.81 +0.1
398,826 - PGA1_c04110 0.84 +0.5
398,836 - PGA1_c04110 0.85 +1.0
398,888 + PGA1_c04110 0.87 +1.3
398,941 - PGA1_c04110 0.90 +0.7
398,981 + +0.9
398,981 + +2.9
398,981 + -0.4
398,981 + +0.5
398,981 + +2.3
398,981 + +0.9
398,981 + +2.2
398,981 + -0.9
398,981 + +0.6
398,981 + +1.6
398,989 - +1.8
399,009 + +2.3
399,066 + +3.7
399,092 - +1.5
399,121 + -1.9
399,121 + -0.9
399,121 + -0.9
399,129 - +1.5
399,129 - -2.9
399,142 - -2.8
399,233 + -0.0
399,276 + PGA1_c04120 0.10 +1.1
399,281 + PGA1_c04120 0.11 +0.4
399,281 + PGA1_c04120 0.11 +0.2
399,281 + PGA1_c04120 0.11 -1.4
399,281 + PGA1_c04120 0.11 +3.4
399,281 + PGA1_c04120 0.11 -2.3
399,281 + PGA1_c04120 0.11 -0.5
399,289 - PGA1_c04120 0.11 -1.5
399,353 - PGA1_c04120 0.17 +0.3
399,440 + PGA1_c04120 0.24 -0.2
399,448 - PGA1_c04120 0.25 +0.3
399,513 - PGA1_c04120 0.31 -0.6
399,520 + PGA1_c04120 0.31 -1.4
399,577 - PGA1_c04120 0.36 +1.4
399,577 - PGA1_c04120 0.36 +0.5
399,650 + PGA1_c04120 0.42 -0.9
399,650 + PGA1_c04120 0.42 +0.3
399,650 + PGA1_c04120 0.42 -0.6
399,650 + PGA1_c04120 0.42 -0.8
399,650 + PGA1_c04120 0.42 -0.1
399,650 + PGA1_c04120 0.42 -0.6
399,650 + PGA1_c04120 0.42 -0.4
399,650 + PGA1_c04120 0.42 -1.8
399,656 - PGA1_c04120 0.43 -2.2
399,658 - PGA1_c04120 0.43 -0.7
399,658 - PGA1_c04120 0.43 +0.6
399,658 - PGA1_c04120 0.43 -0.5
399,658 - PGA1_c04120 0.43 -1.1
399,658 - PGA1_c04120 0.43 -1.2
399,658 - PGA1_c04120 0.43 -2.6
399,766 - PGA1_c04120 0.52 +1.5
399,828 - PGA1_c04120 0.57 +1.1
399,839 + PGA1_c04120 0.58 +0.4
399,894 + PGA1_c04120 0.63 +1.8
399,895 + PGA1_c04120 0.63 +0.3
399,902 - PGA1_c04120 0.64 -0.3
399,916 + PGA1_c04120 0.65 +0.4
399,934 + PGA1_c04120 0.66 +0.1
399,953 + PGA1_c04120 0.68 +1.1
399,961 - PGA1_c04120 0.69 +0.5
399,961 - PGA1_c04120 0.69 +0.0
399,961 - PGA1_c04120 0.69 -0.3
399,961 - PGA1_c04120 0.69 +0.5
400,051 + PGA1_c04120 0.76 +1.4
400,061 + PGA1_c04120 0.77 -1.1
400,093 - PGA1_c04120 0.80 -0.0
400,103 - PGA1_c04120 0.81 +0.2
400,103 - PGA1_c04120 0.81 +0.8
400,104 - PGA1_c04120 0.81 -0.5

Or see this region's nucleotide sequence