Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03930 and PGA1_c03940 are separated by 234 nucleotides PGA1_c03940 and PGA1_c03950 are separated by 128 nucleotides
PGA1_c03930: PGA1_c03930 - Predicted permeases, at 379,540 to 380,463
_c03930
PGA1_c03940: PGA1_c03940 - putative permease protein, at 380,698 to 381,534
_c03940
PGA1_c03950: PGA1_c03950 - putative permease protein, at 381,663 to 382,757
_c03950
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 379.750 kb on + strand, within PGA1_c03930 at 379.826 kb on - strand, within PGA1_c03930 at 379.929 kb on - strand, within PGA1_c03930 at 379.934 kb on - strand, within PGA1_c03930 at 379.963 kb on - strand, within PGA1_c03930 at 380.125 kb on - strand, within PGA1_c03930 at 380.234 kb on - strand, within PGA1_c03930 at 380.468 kb on + strand at 380.468 kb on + strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.614 kb on - strand at 380.638 kb on - strand at 380.665 kb on + strand at 380.665 kb on + strand at 380.716 kb on + strand at 380.716 kb on + strand at 380.729 kb on + strand at 380.777 kb on + strand at 380.783 kb on + strand, within PGA1_c03940 at 380.803 kb on + strand, within PGA1_c03940 at 380.861 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.968 kb on - strand, within PGA1_c03940 at 380.980 kb on + strand, within PGA1_c03940 at 381.110 kb on - strand, within PGA1_c03940 at 381.179 kb on + strand, within PGA1_c03940 at 381.183 kb on - strand, within PGA1_c03940 at 381.188 kb on + strand, within PGA1_c03940 at 381.276 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.298 kb on - strand, within PGA1_c03940 at 381.314 kb on - strand, within PGA1_c03940 at 381.326 kb on + strand, within PGA1_c03940 at 381.339 kb on - strand, within PGA1_c03940 at 381.352 kb on + strand, within PGA1_c03940 at 381.391 kb on - strand, within PGA1_c03940 at 381.514 kb on + strand at 381.560 kb on + strand at 381.577 kb on + strand at 381.585 kb on - strand at 381.639 kb on - strand at 381.651 kb on - strand at 381.681 kb on - strand at 381.683 kb on + strand at 381.691 kb on - strand at 381.717 kb on - strand at 381.717 kb on - strand at 381.741 kb on - strand at 381.854 kb on + strand, within PGA1_c03950 at 381.881 kb on - strand, within PGA1_c03950 at 381.895 kb on - strand, within PGA1_c03950 at 381.961 kb on - strand, within PGA1_c03950 at 382.012 kb on - strand, within PGA1_c03950 at 382.250 kb on - strand, within PGA1_c03950 at 382.314 kb on - strand, within PGA1_c03950 at 382.345 kb on - strand, within PGA1_c03950 at 382.359 kb on - strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.390 kb on + strand, within PGA1_c03950 at 382.413 kb on - strand, within PGA1_c03950 at 382.475 kb on + strand, within PGA1_c03950 at 382.483 kb on - strand, within PGA1_c03950 at 382.488 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950 at 382.494 kb on + strand, within PGA1_c03950
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 379,750 + PGA1_c03930 0.23 +0.0 379,826 - PGA1_c03930 0.31 -1.0 379,929 - PGA1_c03930 0.42 +0.3 379,934 - PGA1_c03930 0.43 -1.3 379,963 - PGA1_c03930 0.46 +0.2 380,125 - PGA1_c03930 0.63 -0.9 380,234 - PGA1_c03930 0.75 -1.5 380,468 + -0.3 380,468 + -2.5 380,476 - +0.6 380,476 - -1.3 380,476 - -0.5 380,476 - +1.8 380,476 - -1.0 380,614 - -0.4 380,638 - +1.0 380,665 + -1.5 380,665 + -1.2 380,716 + -3.3 380,716 + -0.5 380,729 + -2.7 380,777 + +0.0 380,783 + PGA1_c03940 0.10 -2.1 380,803 + PGA1_c03940 0.13 -0.6 380,861 + PGA1_c03940 0.19 -0.3 380,960 + PGA1_c03940 0.31 +0.3 380,960 + PGA1_c03940 0.31 -0.1 380,968 - PGA1_c03940 0.32 +0.5 380,980 + PGA1_c03940 0.34 +1.0 381,110 - PGA1_c03940 0.49 +1.9 381,179 + PGA1_c03940 0.57 +0.8 381,183 - PGA1_c03940 0.58 +1.9 381,188 + PGA1_c03940 0.59 +1.3 381,276 + PGA1_c03940 0.69 -0.0 381,290 + PGA1_c03940 0.71 -0.6 381,290 + PGA1_c03940 0.71 +0.7 381,298 - PGA1_c03940 0.72 -0.5 381,314 - PGA1_c03940 0.74 -0.1 381,326 + PGA1_c03940 0.75 -0.0 381,339 - PGA1_c03940 0.77 +0.7 381,352 + PGA1_c03940 0.78 -2.5 381,391 - PGA1_c03940 0.83 +0.6 381,514 + -0.1 381,560 + +3.2 381,577 + +0.4 381,585 - -2.0 381,639 - +1.0 381,651 - +0.6 381,681 - +1.6 381,683 + +1.6 381,691 - -0.2 381,717 - +0.8 381,717 - -0.7 381,741 - +0.7 381,854 + PGA1_c03950 0.17 -0.8 381,881 - PGA1_c03950 0.20 +1.0 381,895 - PGA1_c03950 0.21 -0.8 381,961 - PGA1_c03950 0.27 +0.0 382,012 - PGA1_c03950 0.32 +0.3 382,250 - PGA1_c03950 0.54 -2.0 382,314 - PGA1_c03950 0.59 -2.4 382,345 - PGA1_c03950 0.62 -0.5 382,359 - PGA1_c03950 0.64 -2.5 382,390 + PGA1_c03950 0.66 -0.2 382,390 + PGA1_c03950 0.66 +0.6 382,390 + PGA1_c03950 0.66 -1.1 382,390 + PGA1_c03950 0.66 +0.3 382,390 + PGA1_c03950 0.66 -2.3 382,390 + PGA1_c03950 0.66 -2.3 382,390 + PGA1_c03950 0.66 +1.3 382,390 + PGA1_c03950 0.66 -1.7 382,390 + PGA1_c03950 0.66 -2.0 382,413 - PGA1_c03950 0.68 -0.1 382,475 + PGA1_c03950 0.74 -0.8 382,483 - PGA1_c03950 0.75 +1.9 382,488 + PGA1_c03950 0.75 -0.1 382,494 + PGA1_c03950 0.76 -2.0 382,494 + PGA1_c03950 0.76 -1.7
Or see this region's nucleotide sequence