Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00360 and PGA1_c00370 are separated by 52 nucleotides PGA1_c00370 and PGA1_c00380 are separated by 44 nucleotides PGA1_c00380 and PGA1_c00390 are separated by 51 nucleotides
PGA1_c00360: PGA1_c00360 - oxygen-independent coproporphyrinogen III oxidase HemN, at 41,128 to 42,483
_c00360
PGA1_c00370: PGA1_c00370 - putative nnrU protein, at 42,536 to 43,231
_c00370
PGA1_c00380: PGA1_c00380 - putative maleylacetoacetate isomerase, at 43,276 to 43,962
_c00380
PGA1_c00390: PGA1_c00390 - glyoxalase-like protein, at 44,014 to 44,556
_c00390
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.536 kb on + strand, within PGA1_c00360 at 41.544 kb on - strand, within PGA1_c00360 at 41.546 kb on + strand, within PGA1_c00360 at 41.560 kb on - strand, within PGA1_c00360 at 41.592 kb on + strand, within PGA1_c00360 at 41.593 kb on + strand, within PGA1_c00360 at 41.593 kb on + strand, within PGA1_c00360 at 41.601 kb on - strand, within PGA1_c00360 at 41.622 kb on + strand, within PGA1_c00360 at 41.627 kb on + strand, within PGA1_c00360 at 41.668 kb on + strand, within PGA1_c00360 at 41.676 kb on - strand, within PGA1_c00360 at 41.709 kb on + strand, within PGA1_c00360 at 41.717 kb on - strand, within PGA1_c00360 at 41.747 kb on + strand, within PGA1_c00360 at 41.777 kb on + strand, within PGA1_c00360 at 41.785 kb on - strand, within PGA1_c00360 at 41.794 kb on + strand, within PGA1_c00360 at 41.794 kb on + strand, within PGA1_c00360 at 41.813 kb on - strand, within PGA1_c00360 at 41.854 kb on + strand, within PGA1_c00360 at 41.883 kb on - strand, within PGA1_c00360 at 41.883 kb on - strand, within PGA1_c00360 at 41.883 kb on - strand, within PGA1_c00360 at 41.990 kb on - strand, within PGA1_c00360 at 41.992 kb on + strand, within PGA1_c00360 at 41.992 kb on + strand, within PGA1_c00360 at 41.992 kb on + strand, within PGA1_c00360 at 42.085 kb on - strand, within PGA1_c00360 at 42.143 kb on - strand, within PGA1_c00360 at 42.236 kb on - strand, within PGA1_c00360 at 42.248 kb on + strand, within PGA1_c00360 at 42.248 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.249 kb on + strand, within PGA1_c00360 at 42.256 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.257 kb on - strand, within PGA1_c00360 at 42.278 kb on - strand, within PGA1_c00360 at 42.281 kb on + strand, within PGA1_c00360 at 42.290 kb on - strand, within PGA1_c00360 at 42.325 kb on + strand, within PGA1_c00360 at 42.327 kb on - strand, within PGA1_c00360 at 42.331 kb on + strand, within PGA1_c00360 at 42.333 kb on - strand, within PGA1_c00360 at 42.336 kb on + strand, within PGA1_c00360 at 42.339 kb on - strand, within PGA1_c00360 at 42.341 kb on + strand, within PGA1_c00360 at 42.344 kb on - strand, within PGA1_c00360 at 42.347 kb on - strand, within PGA1_c00360 at 42.347 kb on - strand, within PGA1_c00360 at 42.349 kb on - strand at 42.375 kb on + strand at 42.383 kb on - strand at 42.388 kb on - strand at 42.402 kb on - strand at 42.404 kb on + strand at 42.410 kb on - strand at 42.420 kb on - strand at 42.421 kb on - strand at 42.422 kb on - strand at 42.422 kb on - strand at 42.430 kb on - strand at 42.501 kb on + strand at 42.501 kb on + strand at 42.511 kb on + strand at 42.511 kb on + strand at 42.511 kb on + strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.542 kb on + strand at 42.542 kb on + strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.550 kb on - strand at 42.558 kb on + strand at 42.591 kb on + strand at 42.622 kb on + strand, within PGA1_c00370 at 42.630 kb on - strand, within PGA1_c00370 at 42.630 kb on - strand, within PGA1_c00370 at 42.630 kb on - strand, within PGA1_c00370 at 42.677 kb on + strand, within PGA1_c00370 at 42.720 kb on + strand, within PGA1_c00370 at 42.721 kb on - strand, within PGA1_c00370 at 42.749 kb on + strand, within PGA1_c00370 at 42.749 kb on + strand, within PGA1_c00370 at 42.757 kb on - strand, within PGA1_c00370 at 42.827 kb on + strand, within PGA1_c00370 at 42.860 kb on - strand, within PGA1_c00370 at 42.860 kb on - strand, within PGA1_c00370 at 42.865 kb on + strand, within PGA1_c00370 at 42.885 kb on + strand, within PGA1_c00370 at 42.893 kb on - strand, within PGA1_c00370 at 42.899 kb on - strand, within PGA1_c00370 at 42.901 kb on + strand, within PGA1_c00370 at 42.933 kb on + strand, within PGA1_c00370 at 42.939 kb on - strand, within PGA1_c00370 at 42.939 kb on - strand, within PGA1_c00370 at 42.964 kb on - strand, within PGA1_c00370 at 43.033 kb on + strand, within PGA1_c00370 at 43.033 kb on + strand, within PGA1_c00370 at 43.041 kb on - strand, within PGA1_c00370 at 43.098 kb on - strand, within PGA1_c00370 at 43.099 kb on - strand, within PGA1_c00370 at 43.213 kb on - strand at 43.249 kb on + strand at 43.267 kb on - strand at 43.306 kb on + strand at 43.316 kb on + strand at 43.316 kb on + strand at 43.316 kb on + strand at 43.357 kb on + strand, within PGA1_c00380 at 43.370 kb on - strand, within PGA1_c00380 at 43.401 kb on + strand, within PGA1_c00380 at 43.401 kb on + strand, within PGA1_c00380 at 43.405 kb on + strand, within PGA1_c00380 at 43.415 kb on + strand, within PGA1_c00380 at 43.418 kb on + strand, within PGA1_c00380 at 43.439 kb on - strand, within PGA1_c00380 at 43.452 kb on + strand, within PGA1_c00380 at 43.458 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.469 kb on + strand, within PGA1_c00380 at 43.477 kb on - strand, within PGA1_c00380 at 43.477 kb on - strand, within PGA1_c00380 at 43.507 kb on + strand, within PGA1_c00380 at 43.507 kb on + strand, within PGA1_c00380 at 43.513 kb on - strand, within PGA1_c00380 at 43.528 kb on - strand, within PGA1_c00380 at 43.585 kb on - strand, within PGA1_c00380 at 43.585 kb on - strand, within PGA1_c00380 at 43.585 kb on - strand, within PGA1_c00380 at 43.600 kb on - strand, within PGA1_c00380 at 43.658 kb on + strand, within PGA1_c00380 at 43.666 kb on - strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.695 kb on + strand, within PGA1_c00380 at 43.697 kb on + strand, within PGA1_c00380 at 43.734 kb on + strand, within PGA1_c00380 at 43.744 kb on + strand, within PGA1_c00380 at 43.752 kb on - strand, within PGA1_c00380 at 43.754 kb on + strand, within PGA1_c00380 at 43.770 kb on + strand, within PGA1_c00380 at 43.786 kb on + strand, within PGA1_c00380 at 43.803 kb on + strand, within PGA1_c00380 at 43.804 kb on + strand, within PGA1_c00380 at 43.804 kb on + strand, within PGA1_c00380 at 43.804 kb on + strand, within PGA1_c00380 at 43.827 kb on + strand, within PGA1_c00380 at 43.835 kb on - strand, within PGA1_c00380 at 43.837 kb on + strand, within PGA1_c00380 at 43.840 kb on - strand, within PGA1_c00380 at 43.842 kb on + strand, within PGA1_c00380 at 43.847 kb on + strand, within PGA1_c00380 at 43.894 kb on + strand at 43.902 kb on - strand at 43.904 kb on + strand at 43.919 kb on - strand at 43.986 kb on + strand at 43.999 kb on + strand at 43.999 kb on + strand at 44.002 kb on - strand at 44.007 kb on - strand at 44.013 kb on + strand at 44.019 kb on - strand at 44.044 kb on - strand at 44.066 kb on + strand at 44.073 kb on + strand, within PGA1_c00390 at 44.127 kb on - strand, within PGA1_c00390 at 44.150 kb on - strand, within PGA1_c00390 at 44.165 kb on - strand, within PGA1_c00390 at 44.171 kb on - strand, within PGA1_c00390 at 44.173 kb on - strand, within PGA1_c00390 at 44.229 kb on + strand, within PGA1_c00390 at 44.229 kb on + strand, within PGA1_c00390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 41,536 + PGA1_c00360 0.30 +0.3 41,536 + PGA1_c00360 0.30 +1.3 41,536 + PGA1_c00360 0.30 -2.3 41,536 + PGA1_c00360 0.30 +0.3 41,536 + PGA1_c00360 0.30 -1.3 41,544 - PGA1_c00360 0.31 -2.5 41,546 + PGA1_c00360 0.31 +0.1 41,560 - PGA1_c00360 0.32 -0.2 41,592 + PGA1_c00360 0.34 -1.1 41,593 + PGA1_c00360 0.34 +0.9 41,593 + PGA1_c00360 0.34 +0.5 41,601 - PGA1_c00360 0.35 +0.5 41,622 + PGA1_c00360 0.36 -2.1 41,627 + PGA1_c00360 0.37 -2.4 41,668 + PGA1_c00360 0.40 +0.4 41,676 - PGA1_c00360 0.40 +0.0 41,709 + PGA1_c00360 0.43 -1.2 41,717 - PGA1_c00360 0.43 +0.2 41,747 + PGA1_c00360 0.46 +0.6 41,777 + PGA1_c00360 0.48 -1.4 41,785 - PGA1_c00360 0.48 +0.3 41,794 + PGA1_c00360 0.49 +1.4 41,794 + PGA1_c00360 0.49 -0.7 41,813 - PGA1_c00360 0.51 -1.3 41,854 + PGA1_c00360 0.54 +0.1 41,883 - PGA1_c00360 0.56 -0.5 41,883 - PGA1_c00360 0.56 +0.3 41,883 - PGA1_c00360 0.56 -0.3 41,990 - PGA1_c00360 0.64 +0.5 41,992 + PGA1_c00360 0.64 -0.3 41,992 + PGA1_c00360 0.64 -0.2 41,992 + PGA1_c00360 0.64 -0.8 42,085 - PGA1_c00360 0.71 -0.2 42,143 - PGA1_c00360 0.75 -0.6 42,236 - PGA1_c00360 0.82 +0.3 42,248 + PGA1_c00360 0.83 +0.5 42,248 + PGA1_c00360 0.83 -1.6 42,249 + PGA1_c00360 0.83 -0.5 42,249 + PGA1_c00360 0.83 +0.8 42,249 + PGA1_c00360 0.83 -0.2 42,249 + PGA1_c00360 0.83 -1.1 42,249 + PGA1_c00360 0.83 +0.8 42,249 + PGA1_c00360 0.83 +0.6 42,256 - PGA1_c00360 0.83 -1.1 42,257 - PGA1_c00360 0.83 -0.4 42,257 - PGA1_c00360 0.83 +0.4 42,257 - PGA1_c00360 0.83 +1.6 42,257 - PGA1_c00360 0.83 +1.6 42,257 - PGA1_c00360 0.83 -0.1 42,257 - PGA1_c00360 0.83 -0.8 42,257 - PGA1_c00360 0.83 +2.1 42,257 - PGA1_c00360 0.83 +0.1 42,257 - PGA1_c00360 0.83 -0.8 42,257 - PGA1_c00360 0.83 -0.9 42,257 - PGA1_c00360 0.83 +1.7 42,257 - PGA1_c00360 0.83 +0.5 42,278 - PGA1_c00360 0.85 +0.2 42,281 + PGA1_c00360 0.85 -3.0 42,290 - PGA1_c00360 0.86 +0.5 42,325 + PGA1_c00360 0.88 +0.1 42,327 - PGA1_c00360 0.88 +0.7 42,331 + PGA1_c00360 0.89 +1.1 42,333 - PGA1_c00360 0.89 +0.6 42,336 + PGA1_c00360 0.89 -0.1 42,339 - PGA1_c00360 0.89 -1.3 42,341 + PGA1_c00360 0.89 -0.8 42,344 - PGA1_c00360 0.90 -0.7 42,347 - PGA1_c00360 0.90 +2.2 42,347 - PGA1_c00360 0.90 -0.9 42,349 - +0.5 42,375 + +0.9 42,383 - +0.3 42,388 - -0.5 42,402 - +0.2 42,404 + -1.2 42,410 - +3.7 42,420 - -0.5 42,421 - -0.2 42,422 - -2.3 42,422 - -0.3 42,430 - -0.8 42,501 + +1.5 42,501 + +1.0 42,511 + +1.3 42,511 + -0.6 42,511 + +0.4 42,519 - -2.5 42,519 - -1.0 42,519 - +0.5 42,519 - -0.3 42,542 + -0.7 42,542 + +0.5 42,550 - +1.3 42,550 - -1.5 42,550 - -0.4 42,550 - +0.5 42,550 - -0.4 42,550 - +1.2 42,550 - +3.9 42,550 - +2.5 42,558 + -1.1 42,591 + +1.4 42,622 + PGA1_c00370 0.12 -0.1 42,630 - PGA1_c00370 0.14 -0.5 42,630 - PGA1_c00370 0.14 -1.1 42,630 - PGA1_c00370 0.14 -0.1 42,677 + PGA1_c00370 0.20 -0.8 42,720 + PGA1_c00370 0.26 -3.3 42,721 - PGA1_c00370 0.27 +1.8 42,749 + PGA1_c00370 0.31 -0.6 42,749 + PGA1_c00370 0.31 -0.4 42,757 - PGA1_c00370 0.32 -0.1 42,827 + PGA1_c00370 0.42 -0.6 42,860 - PGA1_c00370 0.47 +0.2 42,860 - PGA1_c00370 0.47 -1.5 42,865 + PGA1_c00370 0.47 +0.1 42,885 + PGA1_c00370 0.50 +0.2 42,893 - PGA1_c00370 0.51 -0.7 42,899 - PGA1_c00370 0.52 +0.8 42,901 + PGA1_c00370 0.52 -2.5 42,933 + PGA1_c00370 0.57 -1.0 42,939 - PGA1_c00370 0.58 -0.6 42,939 - PGA1_c00370 0.58 -0.9 42,964 - PGA1_c00370 0.61 -0.9 43,033 + PGA1_c00370 0.71 -1.5 43,033 + PGA1_c00370 0.71 -0.7 43,041 - PGA1_c00370 0.73 -0.4 43,098 - PGA1_c00370 0.81 +0.1 43,099 - PGA1_c00370 0.81 +0.1 43,213 - -1.7 43,249 + +0.8 43,267 - +0.7 43,306 + -0.6 43,316 + +0.7 43,316 + -0.2 43,316 + -1.5 43,357 + PGA1_c00380 0.12 +1.1 43,370 - PGA1_c00380 0.14 -0.0 43,401 + PGA1_c00380 0.18 -0.3 43,401 + PGA1_c00380 0.18 -0.9 43,405 + PGA1_c00380 0.19 -2.6 43,415 + PGA1_c00380 0.20 -0.8 43,418 + PGA1_c00380 0.21 -0.6 43,439 - PGA1_c00380 0.24 +0.3 43,452 + PGA1_c00380 0.26 +0.1 43,458 + PGA1_c00380 0.26 -0.9 43,469 + PGA1_c00380 0.28 +0.1 43,469 + PGA1_c00380 0.28 +0.7 43,469 + PGA1_c00380 0.28 -1.1 43,477 - PGA1_c00380 0.29 -0.1 43,477 - PGA1_c00380 0.29 +1.2 43,507 + PGA1_c00380 0.34 -0.1 43,507 + PGA1_c00380 0.34 -0.2 43,513 - PGA1_c00380 0.34 +0.5 43,528 - PGA1_c00380 0.37 +1.7 43,585 - PGA1_c00380 0.45 -0.5 43,585 - PGA1_c00380 0.45 -0.2 43,585 - PGA1_c00380 0.45 -0.2 43,600 - PGA1_c00380 0.47 -1.0 43,658 + PGA1_c00380 0.56 +0.7 43,666 - PGA1_c00380 0.57 +0.8 43,695 + PGA1_c00380 0.61 -0.1 43,695 + PGA1_c00380 0.61 +0.4 43,695 + PGA1_c00380 0.61 +0.2 43,695 + PGA1_c00380 0.61 -0.6 43,697 + PGA1_c00380 0.61 +1.1 43,734 + PGA1_c00380 0.67 +0.8 43,744 + PGA1_c00380 0.68 -3.1 43,752 - PGA1_c00380 0.69 +0.1 43,754 + PGA1_c00380 0.70 +1.3 43,770 + PGA1_c00380 0.72 +0.4 43,786 + PGA1_c00380 0.74 +0.1 43,803 + PGA1_c00380 0.77 +0.0 43,804 + PGA1_c00380 0.77 -1.3 43,804 + PGA1_c00380 0.77 +0.5 43,804 + PGA1_c00380 0.77 +0.5 43,827 + PGA1_c00380 0.80 +1.4 43,835 - PGA1_c00380 0.81 -0.8 43,837 + PGA1_c00380 0.82 +0.1 43,840 - PGA1_c00380 0.82 +0.3 43,842 + PGA1_c00380 0.82 +2.0 43,847 + PGA1_c00380 0.83 +0.5 43,894 + -2.0 43,902 - +0.6 43,904 + -0.5 43,919 - +0.2 43,986 + -0.3 43,999 + +1.7 43,999 + -1.1 44,002 - -0.1 44,007 - -0.0 44,013 + +0.5 44,019 - -0.4 44,044 - -1.4 44,066 + +0.5 44,073 + PGA1_c00390 0.11 +1.0 44,127 - PGA1_c00390 0.21 +1.2 44,150 - PGA1_c00390 0.25 -2.6 44,165 - PGA1_c00390 0.28 +1.1 44,171 - PGA1_c00390 0.29 +0.7 44,173 - PGA1_c00390 0.29 +1.3 44,229 + PGA1_c00390 0.40 +0.9 44,229 + PGA1_c00390 0.40 +0.7
Or see this region's nucleotide sequence