Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00310 and PGA1_262p00320 overlap by 4 nucleotides PGA1_262p00320 and PGA1_262p00330 are separated by 13 nucleotides PGA1_262p00330 and PGA1_262p00340 overlap by 4 nucleotides PGA1_262p00340 and PGA1_262p00350 overlap by 8 nucleotides
PGA1_262p00310: PGA1_262p00310 - glutathione transport system permease protein GsiC, at 35,068 to 36,009
_262p00310
PGA1_262p00320: PGA1_262p00320 - ABC transporter, inner membrane component, at 36,006 to 36,872
_262p00320
PGA1_262p00330: PGA1_262p00330 - oligopeptide ABC transporter, ATP binding protein, at 36,886 to 37,884
_262p00330
PGA1_262p00340: PGA1_262p00340 - oligopeptide ABC transporter, ATP binding protein, at 37,881 to 38,879
_262p00340
PGA1_262p00350: PGA1_262p00350 - metallopeptidase, family M24, at 38,872 to 40,674
_262p00350
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1
2
3 at 35.920 kb on + strand at 36.023 kb on + strand at 36.154 kb on + strand, within PGA1_262p00320 at 36.242 kb on - strand, within PGA1_262p00320 at 36.376 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.491 kb on - strand, within PGA1_262p00320 at 36.515 kb on - strand, within PGA1_262p00320 at 36.632 kb on - strand, within PGA1_262p00320 at 36.882 kb on + strand at 36.927 kb on + strand at 36.955 kb on + strand at 36.983 kb on + strand at 36.999 kb on + strand, within PGA1_262p00330 at 37.043 kb on - strand, within PGA1_262p00330 at 37.156 kb on + strand, within PGA1_262p00330 at 37.218 kb on + strand, within PGA1_262p00330 at 37.274 kb on - strand, within PGA1_262p00330 at 37.512 kb on - strand, within PGA1_262p00330 at 37.552 kb on + strand, within PGA1_262p00330 at 37.552 kb on + strand, within PGA1_262p00330 at 37.560 kb on - strand, within PGA1_262p00330 at 37.560 kb on - strand, within PGA1_262p00330 at 37.562 kb on + strand, within PGA1_262p00330 at 37.603 kb on - strand, within PGA1_262p00330 at 37.639 kb on - strand, within PGA1_262p00330 at 37.641 kb on + strand, within PGA1_262p00330 at 37.644 kb on - strand, within PGA1_262p00330 at 37.698 kb on + strand, within PGA1_262p00330 at 37.698 kb on + strand, within PGA1_262p00330 at 37.754 kb on + strand, within PGA1_262p00330 at 37.878 kb on + strand at 37.993 kb on + strand, within PGA1_262p00340 at 38.079 kb on - strand, within PGA1_262p00340 at 38.240 kb on + strand, within PGA1_262p00340 at 38.546 kb on + strand, within PGA1_262p00340 at 38.619 kb on - strand, within PGA1_262p00340 at 38.730 kb on + strand, within PGA1_262p00340 at 38.730 kb on + strand, within PGA1_262p00340 at 38.738 kb on - strand, within PGA1_262p00340
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 35,920 + -0.0 36,023 + -1.6 36,154 + PGA1_262p00320 0.17 +2.9 36,242 - PGA1_262p00320 0.27 -1.3 36,376 - PGA1_262p00320 0.43 -0.2 36,425 - PGA1_262p00320 0.48 +0.2 36,425 - PGA1_262p00320 0.48 +0.8 36,491 - PGA1_262p00320 0.56 +1.3 36,515 - PGA1_262p00320 0.59 +1.1 36,632 - PGA1_262p00320 0.72 -0.4 36,882 + +0.3 36,927 + +0.7 36,955 + +1.9 36,983 + -0.3 36,999 + PGA1_262p00330 0.11 +0.9 37,043 - PGA1_262p00330 0.16 +0.7 37,156 + PGA1_262p00330 0.27 +1.1 37,218 + PGA1_262p00330 0.33 +0.2 37,274 - PGA1_262p00330 0.39 -0.7 37,512 - PGA1_262p00330 0.63 -0.3 37,552 + PGA1_262p00330 0.67 -0.0 37,552 + PGA1_262p00330 0.67 -0.7 37,560 - PGA1_262p00330 0.67 +0.2 37,560 - PGA1_262p00330 0.67 +1.3 37,562 + PGA1_262p00330 0.68 -0.0 37,603 - PGA1_262p00330 0.72 +0.5 37,639 - PGA1_262p00330 0.75 -0.4 37,641 + PGA1_262p00330 0.76 -1.1 37,644 - PGA1_262p00330 0.76 -0.3 37,698 + PGA1_262p00330 0.81 +0.6 37,698 + PGA1_262p00330 0.81 +0.0 37,754 + PGA1_262p00330 0.87 +1.3 37,878 + +0.6 37,993 + PGA1_262p00340 0.11 -0.1 38,079 - PGA1_262p00340 0.20 -0.9 38,240 + PGA1_262p00340 0.36 -1.7 38,546 + PGA1_262p00340 0.67 -0.4 38,619 - PGA1_262p00340 0.74 -1.0 38,730 + PGA1_262p00340 0.85 -0.4 38,730 + PGA1_262p00340 0.85 +0.5 38,738 - PGA1_262p00340 0.86 -0.1
Or see this region's nucleotide sequence