Experiment: m.b. Cobalt chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3530 and HP15_3531 are separated by 23 nucleotides HP15_3531 and HP15_3532 are separated by 250 nucleotides HP15_3532 and HP15_3533 are separated by 97 nucleotides
HP15_3530: HP15_3530 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase, at 3,717,261 to 3,717,635
_3530
HP15_3531: HP15_3531 - hypothetical protein, at 3,717,659 to 3,718,096
_3531
HP15_3532: HP15_3532 - Metal-dependent phosphohydrolase, HD subdomain protein, at 3,718,347 to 3,719,519
_3532
HP15_3533: HP15_3533 - response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 3,719,617 to 3,721,842
_3533
Position (kb)
3718
3719
3720 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3717.384 kb on - strand, within HP15_3530 at 3717.386 kb on + strand, within HP15_3530 at 3717.405 kb on + strand, within HP15_3530 at 3717.406 kb on + strand, within HP15_3530 at 3717.432 kb on + strand, within HP15_3530 at 3717.487 kb on + strand, within HP15_3530 at 3717.503 kb on - strand, within HP15_3530 at 3717.505 kb on - strand, within HP15_3530 at 3717.512 kb on - strand, within HP15_3530 at 3717.518 kb on - strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.563 kb on + strand, within HP15_3530 at 3717.663 kb on - strand at 3717.866 kb on - strand, within HP15_3531 at 3718.011 kb on + strand, within HP15_3531 at 3718.098 kb on - strand at 3718.100 kb on - strand at 3718.105 kb on - strand at 3718.282 kb on + strand at 3718.282 kb on + strand at 3718.340 kb on - strand at 3718.361 kb on + strand at 3718.363 kb on + strand at 3718.366 kb on + strand at 3718.369 kb on - strand at 3718.433 kb on + strand at 3718.439 kb on + strand at 3718.473 kb on + strand, within HP15_3532 at 3718.541 kb on - strand, within HP15_3532 at 3718.570 kb on - strand, within HP15_3532 at 3718.578 kb on + strand, within HP15_3532 at 3718.598 kb on - strand, within HP15_3532 at 3718.598 kb on - strand, within HP15_3532 at 3718.677 kb on + strand, within HP15_3532 at 3718.685 kb on - strand, within HP15_3532 at 3718.741 kb on - strand, within HP15_3532 at 3718.757 kb on + strand, within HP15_3532 at 3718.797 kb on - strand, within HP15_3532 at 3719.044 kb on + strand, within HP15_3532 at 3719.052 kb on - strand, within HP15_3532 at 3719.052 kb on - strand, within HP15_3532 at 3719.069 kb on + strand, within HP15_3532 at 3719.091 kb on - strand, within HP15_3532 at 3719.140 kb on - strand, within HP15_3532 at 3719.198 kb on + strand, within HP15_3532 at 3719.214 kb on + strand, within HP15_3532 at 3719.323 kb on + strand, within HP15_3532 at 3719.464 kb on + strand at 3719.595 kb on + strand at 3719.595 kb on + strand at 3719.682 kb on + strand at 3719.695 kb on - strand at 3719.742 kb on + strand at 3719.745 kb on - strand at 3719.751 kb on + strand at 3719.811 kb on + strand at 3719.821 kb on + strand at 3719.829 kb on - strand at 3719.836 kb on + strand at 3719.844 kb on - strand, within HP15_3533 at 3719.907 kb on - strand, within HP15_3533 at 3719.930 kb on + strand, within HP15_3533 at 3719.938 kb on - strand, within HP15_3533 at 3719.966 kb on + strand, within HP15_3533 at 3719.980 kb on - strand, within HP15_3533 at 3720.039 kb on + strand, within HP15_3533 at 3720.041 kb on - strand, within HP15_3533 at 3720.072 kb on + strand, within HP15_3533 at 3720.093 kb on + strand, within HP15_3533 at 3720.148 kb on - strand, within HP15_3533 at 3720.247 kb on - strand, within HP15_3533 at 3720.247 kb on - strand, within HP15_3533 at 3720.247 kb on - strand, within HP15_3533 at 3720.297 kb on + strand, within HP15_3533 at 3720.313 kb on - strand, within HP15_3533 at 3720.342 kb on - strand, within HP15_3533 at 3720.361 kb on + strand, within HP15_3533 at 3720.361 kb on + strand, within HP15_3533 at 3720.361 kb on + strand, within HP15_3533 at 3720.369 kb on - strand, within HP15_3533 at 3720.369 kb on - strand, within HP15_3533 at 3720.369 kb on - strand, within HP15_3533 at 3720.369 kb on - strand, within HP15_3533 at 3720.511 kb on + strand, within HP15_3533
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.64 mM remove 3,717,384 - HP15_3530 0.33 -1.1 3,717,386 + HP15_3530 0.33 -0.3 3,717,405 + HP15_3530 0.38 -1.0 3,717,406 + HP15_3530 0.39 -0.5 3,717,432 + HP15_3530 0.46 +2.4 3,717,487 + HP15_3530 0.60 -1.1 3,717,503 - HP15_3530 0.65 +0.7 3,717,505 - HP15_3530 0.65 -0.4 3,717,512 - HP15_3530 0.67 -0.2 3,717,518 - HP15_3530 0.69 -1.2 3,717,519 + HP15_3530 0.69 -0.3 3,717,519 + HP15_3530 0.69 -0.9 3,717,519 + HP15_3530 0.69 +1.1 3,717,519 + HP15_3530 0.69 -0.5 3,717,519 + HP15_3530 0.69 +0.2 3,717,527 - HP15_3530 0.71 -0.0 3,717,527 - HP15_3530 0.71 -0.6 3,717,527 - HP15_3530 0.71 +0.8 3,717,527 - HP15_3530 0.71 -0.4 3,717,563 + HP15_3530 0.81 +1.0 3,717,663 - -0.2 3,717,866 - HP15_3531 0.47 -0.0 3,718,011 + HP15_3531 0.80 -1.5 3,718,098 - +1.5 3,718,100 - -0.1 3,718,105 - +0.6 3,718,282 + +1.4 3,718,282 + +0.5 3,718,340 - -0.0 3,718,361 + +0.4 3,718,363 + -0.5 3,718,366 + -0.1 3,718,369 - +0.3 3,718,433 + -0.2 3,718,439 + -2.2 3,718,473 + HP15_3532 0.11 +0.4 3,718,541 - HP15_3532 0.17 +1.0 3,718,570 - HP15_3532 0.19 -0.5 3,718,578 + HP15_3532 0.20 -0.4 3,718,598 - HP15_3532 0.21 +0.1 3,718,598 - HP15_3532 0.21 +0.1 3,718,677 + HP15_3532 0.28 +0.1 3,718,685 - HP15_3532 0.29 -0.2 3,718,741 - HP15_3532 0.34 -0.0 3,718,757 + HP15_3532 0.35 +0.5 3,718,797 - HP15_3532 0.38 -0.1 3,719,044 + HP15_3532 0.59 +0.5 3,719,052 - HP15_3532 0.60 -0.4 3,719,052 - HP15_3532 0.60 +0.5 3,719,069 + HP15_3532 0.62 +0.2 3,719,091 - HP15_3532 0.63 +0.4 3,719,140 - HP15_3532 0.68 +0.3 3,719,198 + HP15_3532 0.73 +0.5 3,719,214 + HP15_3532 0.74 +1.7 3,719,323 + HP15_3532 0.83 -0.2 3,719,464 + -0.9 3,719,595 + -0.5 3,719,595 + +0.4 3,719,682 + +0.0 3,719,695 - -0.7 3,719,742 + +0.8 3,719,745 - +1.1 3,719,751 + +0.3 3,719,811 + -0.3 3,719,821 + +0.3 3,719,829 - +0.5 3,719,836 + -0.2 3,719,844 - HP15_3533 0.10 +0.1 3,719,907 - HP15_3533 0.13 -0.0 3,719,930 + HP15_3533 0.14 +0.0 3,719,938 - HP15_3533 0.14 -0.1 3,719,966 + HP15_3533 0.16 -1.0 3,719,980 - HP15_3533 0.16 +0.7 3,720,039 + HP15_3533 0.19 +0.9 3,720,041 - HP15_3533 0.19 +0.1 3,720,072 + HP15_3533 0.20 +0.5 3,720,093 + HP15_3533 0.21 +0.3 3,720,148 - HP15_3533 0.24 +0.5 3,720,247 - HP15_3533 0.28 +0.4 3,720,247 - HP15_3533 0.28 -0.5 3,720,247 - HP15_3533 0.28 -0.1 3,720,297 + HP15_3533 0.31 +0.2 3,720,313 - HP15_3533 0.31 -0.2 3,720,342 - HP15_3533 0.33 -0.7 3,720,361 + HP15_3533 0.33 +0.1 3,720,361 + HP15_3533 0.33 +0.3 3,720,361 + HP15_3533 0.33 +1.9 3,720,369 - HP15_3533 0.34 -0.3 3,720,369 - HP15_3533 0.34 +0.8 3,720,369 - HP15_3533 0.34 -0.3 3,720,369 - HP15_3533 0.34 +0.5 3,720,511 + HP15_3533 0.40 +0.2
Or see this region's nucleotide sequence