Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03660 and PGA1_c03670 are separated by 109 nucleotides PGA1_c03670 and PGA1_c03680 are separated by 383 nucleotides PGA1_c03680 and PGA1_c03690 are separated by 35 nucleotides PGA1_c03690 and PGA1_c03700 are separated by 6 nucleotides PGA1_c03700 and PGA1_c03710 overlap by 1 nucleotides
PGA1_c03660: PGA1_c03660 - Predicted permeases, at 353,551 to 354,306
_c03660
PGA1_c03670: PGA1_c03670 - hypothetical protein, at 354,416 to 354,745
_c03670
PGA1_c03680: PGA1_c03680 - (3S)-malyl-CoA thioesterase [EC:3.1.2.30] <small>(from data)</small>, at 355,129 to 355,983
_c03680
PGA1_c03690: PGA1_c03690 - putative NnrU protein, at 356,019 to 356,567
_c03690
PGA1_c03700: PGA1_c03700 - Uncharacterized conserved small protein, at 356,574 to 356,777
_c03700
PGA1_c03710: PGA1_c03710 - Acyl dehydratase, at 356,777 to 357,808
_c03710
Position (kb) 355
356 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 354.131 kb on + strand, within PGA1_c03660 at 354.168 kb on - strand, within PGA1_c03660 at 354.175 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.184 kb on - strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.221 kb on + strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.229 kb on - strand, within PGA1_c03660 at 354.244 kb on + strand at 354.252 kb on - strand at 354.285 kb on + strand at 354.285 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.298 kb on - strand at 354.300 kb on + strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.308 kb on - strand at 354.308 kb on - strand at 354.318 kb on - strand at 354.355 kb on - strand at 354.379 kb on - strand at 354.385 kb on + strand at 354.392 kb on + strand at 354.393 kb on - strand at 354.393 kb on - strand at 354.422 kb on - strand at 354.428 kb on + strand at 354.436 kb on - strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.446 kb on - strand at 354.446 kb on - strand at 354.446 kb on - strand at 354.464 kb on + strand, within PGA1_c03670 at 354.469 kb on + strand, within PGA1_c03670 at 354.472 kb on - strand, within PGA1_c03670 at 354.511 kb on + strand, within PGA1_c03670 at 354.605 kb on + strand, within PGA1_c03670 at 354.605 kb on + strand, within PGA1_c03670 at 354.613 kb on - strand, within PGA1_c03670 at 354.651 kb on + strand, within PGA1_c03670 at 354.656 kb on + strand, within PGA1_c03670 at 354.661 kb on + strand, within PGA1_c03670 at 354.674 kb on - strand, within PGA1_c03670 at 354.692 kb on - strand, within PGA1_c03670 at 354.708 kb on + strand, within PGA1_c03670 at 354.708 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.716 kb on - strand at 354.718 kb on - strand at 354.718 kb on - strand at 354.718 kb on - strand at 354.718 kb on - strand at 354.755 kb on - strand at 354.755 kb on - strand at 354.756 kb on - strand at 354.777 kb on + strand at 354.784 kb on + strand at 354.786 kb on - strand at 354.786 kb on - strand at 354.799 kb on + strand at 354.802 kb on - strand at 354.807 kb on - strand at 354.807 kb on - strand at 354.807 kb on - strand at 354.812 kb on - strand at 354.815 kb on + strand at 354.857 kb on + strand at 354.860 kb on - strand at 354.865 kb on - strand at 354.865 kb on - strand at 354.915 kb on - strand at 354.940 kb on + strand at 354.948 kb on - strand at 354.957 kb on + strand at 355.135 kb on - strand at 355.159 kb on + strand at 355.276 kb on + strand, within PGA1_c03680 at 355.291 kb on - strand, within PGA1_c03680 at 355.312 kb on - strand, within PGA1_c03680 at 355.323 kb on + strand, within PGA1_c03680 at 355.357 kb on + strand, within PGA1_c03680 at 355.416 kb on + strand, within PGA1_c03680 at 355.416 kb on + strand, within PGA1_c03680 at 355.471 kb on - strand, within PGA1_c03680 at 355.488 kb on + strand, within PGA1_c03680 at 355.488 kb on + strand, within PGA1_c03680 at 355.496 kb on - strand, within PGA1_c03680 at 355.496 kb on - strand, within PGA1_c03680 at 355.517 kb on - strand, within PGA1_c03680 at 355.610 kb on + strand, within PGA1_c03680 at 355.641 kb on - strand, within PGA1_c03680 at 355.684 kb on - strand, within PGA1_c03680 at 355.693 kb on + strand, within PGA1_c03680 at 355.694 kb on - strand, within PGA1_c03680 at 355.705 kb on + strand, within PGA1_c03680 at 355.712 kb on + strand, within PGA1_c03680 at 355.721 kb on - strand, within PGA1_c03680 at 355.721 kb on - strand, within PGA1_c03680 at 355.748 kb on - strand, within PGA1_c03680 at 355.777 kb on + strand, within PGA1_c03680 at 355.785 kb on - strand, within PGA1_c03680 at 355.870 kb on + strand, within PGA1_c03680 at 355.877 kb on - strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.883 kb on + strand, within PGA1_c03680 at 355.883 kb on - strand, within PGA1_c03680 at 355.889 kb on - strand, within PGA1_c03680 at 355.889 kb on - strand, within PGA1_c03680 at 355.889 kb on - strand, within PGA1_c03680 at 355.980 kb on - strand at 355.980 kb on - strand at 356.002 kb on + strand at 356.002 kb on - strand at 356.031 kb on + strand at 356.097 kb on + strand, within PGA1_c03690 at 356.097 kb on + strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.130 kb on + strand, within PGA1_c03690 at 356.159 kb on - strand, within PGA1_c03690 at 356.159 kb on - strand, within PGA1_c03690 at 356.175 kb on + strand, within PGA1_c03690 at 356.185 kb on + strand, within PGA1_c03690 at 356.186 kb on - strand, within PGA1_c03690 at 356.186 kb on - strand, within PGA1_c03690 at 356.233 kb on + strand, within PGA1_c03690 at 356.263 kb on + strand, within PGA1_c03690 at 356.263 kb on + strand, within PGA1_c03690 at 356.268 kb on + strand, within PGA1_c03690 at 356.271 kb on - strand, within PGA1_c03690 at 356.271 kb on - strand, within PGA1_c03690 at 356.271 kb on - strand, within PGA1_c03690 at 356.276 kb on - strand, within PGA1_c03690 at 356.276 kb on - strand, within PGA1_c03690 at 356.379 kb on - strand, within PGA1_c03690 at 356.389 kb on - strand, within PGA1_c03690 at 356.436 kb on - strand, within PGA1_c03690 at 356.441 kb on + strand, within PGA1_c03690 at 356.444 kb on - strand, within PGA1_c03690 at 356.449 kb on - strand, within PGA1_c03690 at 356.519 kb on + strand at 356.538 kb on - strand at 356.620 kb on + strand, within PGA1_c03700 at 356.628 kb on - strand, within PGA1_c03700 at 356.628 kb on - strand, within PGA1_c03700 at 356.642 kb on + strand, within PGA1_c03700 at 356.642 kb on + strand, within PGA1_c03700 at 356.650 kb on - strand, within PGA1_c03700 at 356.658 kb on + strand, within PGA1_c03700 at 356.736 kb on + strand, within PGA1_c03700 at 356.751 kb on + strand, within PGA1_c03700 at 356.759 kb on - strand at 356.780 kb on + strand at 356.780 kb on + strand at 356.787 kb on - strand at 356.788 kb on - strand at 356.789 kb on + strand at 356.792 kb on - strand at 356.797 kb on - strand at 356.797 kb on - strand at 356.869 kb on - strand at 356.937 kb on + strand, within PGA1_c03710 at 356.937 kb on + strand, within PGA1_c03710 at 356.945 kb on - strand, within PGA1_c03710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 354,131 + PGA1_c03660 0.77 +0.7 354,168 - PGA1_c03660 0.82 -0.4 354,175 + PGA1_c03660 0.83 -1.0 354,176 + PGA1_c03660 0.83 -1.2 354,176 + PGA1_c03660 0.83 +1.0 354,184 - PGA1_c03660 0.84 +1.4 354,186 + PGA1_c03660 0.84 +0.2 354,186 + PGA1_c03660 0.84 -0.5 354,194 - PGA1_c03660 0.85 +0.6 354,194 - PGA1_c03660 0.85 +2.0 354,221 + PGA1_c03660 0.89 +0.5 354,222 - PGA1_c03660 0.89 +1.4 354,222 - PGA1_c03660 0.89 +0.5 354,229 - PGA1_c03660 0.90 +0.0 354,244 + +0.7 354,252 - -0.1 354,285 + +0.0 354,285 + -1.5 354,295 + +0.5 354,295 + +0.2 354,295 + -2.0 354,298 - -2.1 354,300 + -0.3 354,303 - -0.2 354,303 - +0.8 354,303 - -0.1 354,303 - +1.2 354,303 - +1.2 354,303 - -1.1 354,308 - +0.7 354,308 - +0.6 354,318 - -0.1 354,355 - +0.4 354,379 - -1.8 354,385 + -0.5 354,392 + +1.6 354,393 - +1.0 354,393 - +0.4 354,422 - +0.7 354,428 + +0.3 354,436 - -2.4 354,438 + +0.5 354,438 + +0.7 354,438 + +1.7 354,438 + -0.1 354,438 + -1.3 354,446 - +1.3 354,446 - -1.1 354,446 - +0.3 354,464 + PGA1_c03670 0.15 +0.4 354,469 + PGA1_c03670 0.16 +0.2 354,472 - PGA1_c03670 0.17 +0.5 354,511 + PGA1_c03670 0.29 +0.6 354,605 + PGA1_c03670 0.57 +1.0 354,605 + PGA1_c03670 0.57 -2.1 354,613 - PGA1_c03670 0.60 -0.1 354,651 + PGA1_c03670 0.71 -0.1 354,656 + PGA1_c03670 0.73 +1.0 354,661 + PGA1_c03670 0.74 +0.4 354,674 - PGA1_c03670 0.78 +3.9 354,692 - PGA1_c03670 0.84 +1.0 354,708 + PGA1_c03670 0.88 +0.8 354,708 + PGA1_c03670 0.88 +1.5 354,710 + PGA1_c03670 0.89 +0.8 354,710 + PGA1_c03670 0.89 +1.6 354,710 + PGA1_c03670 0.89 +1.8 354,710 + PGA1_c03670 0.89 +1.0 354,716 - +0.6 354,718 - -0.2 354,718 - +0.4 354,718 - +0.5 354,718 - +0.3 354,755 - -0.2 354,755 - +1.5 354,756 - +0.8 354,777 + +0.3 354,784 + +0.7 354,786 - -0.6 354,786 - +1.8 354,799 + +0.6 354,802 - -0.3 354,807 - -0.5 354,807 - +0.8 354,807 - +1.1 354,812 - +0.0 354,815 + +0.2 354,857 + -0.2 354,860 - +0.0 354,865 - -1.0 354,865 - +0.9 354,915 - -0.1 354,940 + +1.9 354,948 - -2.3 354,957 + +0.7 355,135 - +0.3 355,159 + +0.6 355,276 + PGA1_c03680 0.17 -0.0 355,291 - PGA1_c03680 0.19 +1.0 355,312 - PGA1_c03680 0.21 +2.6 355,323 + PGA1_c03680 0.23 -0.5 355,357 + PGA1_c03680 0.27 +0.6 355,416 + PGA1_c03680 0.34 +0.0 355,416 + PGA1_c03680 0.34 -2.1 355,471 - PGA1_c03680 0.40 +3.0 355,488 + PGA1_c03680 0.42 +0.4 355,488 + PGA1_c03680 0.42 +0.1 355,496 - PGA1_c03680 0.43 -0.4 355,496 - PGA1_c03680 0.43 -2.0 355,517 - PGA1_c03680 0.45 +0.5 355,610 + PGA1_c03680 0.56 -2.0 355,641 - PGA1_c03680 0.60 +1.0 355,684 - PGA1_c03680 0.65 +0.6 355,693 + PGA1_c03680 0.66 +0.4 355,694 - PGA1_c03680 0.66 +1.0 355,705 + PGA1_c03680 0.67 +0.8 355,712 + PGA1_c03680 0.68 -1.1 355,721 - PGA1_c03680 0.69 +1.0 355,721 - PGA1_c03680 0.69 +0.3 355,748 - PGA1_c03680 0.72 +2.3 355,777 + PGA1_c03680 0.76 +2.2 355,785 - PGA1_c03680 0.77 -0.2 355,870 + PGA1_c03680 0.87 -1.8 355,877 - PGA1_c03680 0.87 -2.0 355,881 + PGA1_c03680 0.88 +0.8 355,881 + PGA1_c03680 0.88 +0.9 355,881 + PGA1_c03680 0.88 -2.3 355,881 + PGA1_c03680 0.88 -2.1 355,881 + PGA1_c03680 0.88 -1.0 355,881 + PGA1_c03680 0.88 +0.1 355,881 + PGA1_c03680 0.88 +0.3 355,883 + PGA1_c03680 0.88 +1.4 355,883 - PGA1_c03680 0.88 -1.8 355,889 - PGA1_c03680 0.89 +0.5 355,889 - PGA1_c03680 0.89 +1.9 355,889 - PGA1_c03680 0.89 +1.0 355,980 - -1.0 355,980 - -0.3 356,002 + -0.1 356,002 - +0.0 356,031 + +0.7 356,097 + PGA1_c03690 0.14 +0.6 356,097 + PGA1_c03690 0.14 +1.3 356,105 - PGA1_c03690 0.16 +0.4 356,105 - PGA1_c03690 0.16 -1.2 356,105 - PGA1_c03690 0.16 -0.5 356,105 - PGA1_c03690 0.16 +0.9 356,130 + PGA1_c03690 0.20 +1.7 356,159 - PGA1_c03690 0.26 +0.1 356,159 - PGA1_c03690 0.26 -1.0 356,175 + PGA1_c03690 0.28 -1.4 356,185 + PGA1_c03690 0.30 -0.7 356,186 - PGA1_c03690 0.30 +0.0 356,186 - PGA1_c03690 0.30 -0.2 356,233 + PGA1_c03690 0.39 -0.4 356,263 + PGA1_c03690 0.44 -1.1 356,263 + PGA1_c03690 0.44 -0.5 356,268 + PGA1_c03690 0.45 -1.0 356,271 - PGA1_c03690 0.46 +1.4 356,271 - PGA1_c03690 0.46 +0.6 356,271 - PGA1_c03690 0.46 -1.0 356,276 - PGA1_c03690 0.47 +0.1 356,276 - PGA1_c03690 0.47 +0.4 356,379 - PGA1_c03690 0.66 +2.0 356,389 - PGA1_c03690 0.67 +1.4 356,436 - PGA1_c03690 0.76 -1.0 356,441 + PGA1_c03690 0.77 -0.5 356,444 - PGA1_c03690 0.77 +1.2 356,449 - PGA1_c03690 0.78 +0.5 356,519 + +0.6 356,538 - +2.0 356,620 + PGA1_c03700 0.23 +0.7 356,628 - PGA1_c03700 0.26 -1.7 356,628 - PGA1_c03700 0.26 +0.4 356,642 + PGA1_c03700 0.33 +1.6 356,642 + PGA1_c03700 0.33 +1.9 356,650 - PGA1_c03700 0.37 +0.6 356,658 + PGA1_c03700 0.41 +0.5 356,736 + PGA1_c03700 0.79 +1.3 356,751 + PGA1_c03700 0.87 -2.5 356,759 - -0.4 356,780 + -0.2 356,780 + +2.6 356,787 - -0.5 356,788 - -0.0 356,789 + -0.2 356,792 - +1.6 356,797 - +1.6 356,797 - -1.2 356,869 - +1.4 356,937 + PGA1_c03710 0.16 -0.5 356,937 + PGA1_c03710 0.16 -0.4 356,945 - PGA1_c03710 0.16 -1.5
Or see this region's nucleotide sequence