Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03450 and PGA1_c03460 are separated by 81 nucleotides PGA1_c03460 and PGA1_c03470 are separated by 52 nucleotides
PGA1_c03450: PGA1_c03450 - argininosuccinate lyase ArgH, at 331,010 to 332,380
_c03450
PGA1_c03460: PGA1_c03460 - hypothetical protein, at 332,462 to 332,647
_c03460
PGA1_c03470: PGA1_c03470 - diaminopimelate decarboxylase LysA, at 332,700 to 333,965
_c03470
Position (kb) 332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 331.918 kb on + strand, within PGA1_c03450 at 332.366 kb on - strand at 332.413 kb on - strand at 332.463 kb on - strand at 332.469 kb on + strand at 332.487 kb on - strand, within PGA1_c03460 at 332.492 kb on - strand, within PGA1_c03460 at 332.502 kb on + strand, within PGA1_c03460 at 332.591 kb on - strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.611 kb on + strand, within PGA1_c03460 at 332.611 kb on + strand, within PGA1_c03460 at 332.611 kb on + strand, within PGA1_c03460 at 332.619 kb on - strand, within PGA1_c03460 at 332.619 kb on - strand, within PGA1_c03460 at 332.628 kb on + strand, within PGA1_c03460 at 332.634 kb on + strand at 332.634 kb on + strand at 332.634 kb on + strand at 332.634 kb on + strand at 332.642 kb on + strand at 332.642 kb on + strand at 332.642 kb on + strand at 332.642 kb on + strand at 332.642 kb on - strand at 332.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 331,918 + PGA1_c03450 0.66 -1.8 332,366 - -0.5 332,413 - +1.6 332,463 - -0.6 332,469 + -1.5 332,487 - PGA1_c03460 0.13 +0.4 332,492 - PGA1_c03460 0.16 -2.9 332,502 + PGA1_c03460 0.22 -2.0 332,591 - PGA1_c03460 0.69 -1.4 332,601 + PGA1_c03460 0.75 +0.7 332,601 + PGA1_c03460 0.75 -2.5 332,601 + PGA1_c03460 0.75 +0.3 332,601 + PGA1_c03460 0.75 -0.5 332,601 + PGA1_c03460 0.75 +0.2 332,609 - PGA1_c03460 0.79 +0.1 332,609 - PGA1_c03460 0.79 -0.6 332,609 - PGA1_c03460 0.79 +0.0 332,609 - PGA1_c03460 0.79 -1.8 332,609 - PGA1_c03460 0.79 -2.1 332,611 + PGA1_c03460 0.80 +1.2 332,611 + PGA1_c03460 0.80 +1.3 332,611 + PGA1_c03460 0.80 -0.8 332,619 - PGA1_c03460 0.84 -0.8 332,619 - PGA1_c03460 0.84 -2.4 332,628 + PGA1_c03460 0.89 +0.0 332,634 + +0.4 332,634 + +4.0 332,634 + -1.5 332,634 + +0.4 332,642 + -0.8 332,642 + +2.2 332,642 + +1.2 332,642 + +0.8 332,642 - -1.7 332,650 - +0.8
Or see this region's nucleotide sequence